Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50705 * 119.99821 * 2 1 4 4 N 1.46497 * 109.46742 * 125.00537 * 3 2 1 5 5 C 1.35536 * 125.67349 * 260.35170 * 4 3 2 6 6 C 1.35452 * 108.87043 * 179.83145 * 5 4 3 7 7 C 1.39840 * 107.86363 * 0.43030 * 6 5 4 8 8 C 1.37646 * 125.68303 * 80.66167 * 4 3 2 9 9 C 1.46679 * 126.23279 * 359.97438 * 8 4 3 10 10 O 1.21703 * 119.99866 * 5.31883 * 9 8 4 11 11 N 1.34773 * 120.00212 * 185.31615 * 9 8 4 12 12 C 1.46503 * 120.00269 * 185.16062 * 11 9 8 13 13 C 1.52994 * 109.47383 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47294 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47481 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00367 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00117 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47152 * 90.00188 * 20 18 16 22 22 H 1.48500 * 109.47265 * 210.00169 * 20 18 16 23 23 H 1.48501 * 109.47025 * 330.00067 * 20 18 16 24 24 H 1.07993 * 119.99653 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99746 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99905 * 179.72962 * 2 1 3 27 27 H 1.08998 * 109.46872 * 244.99983 * 3 2 1 28 28 H 1.09000 * 109.46866 * 5.00006 * 3 2 1 29 29 H 1.08000 * 125.56845 * 359.97438 * 5 4 3 30 30 H 1.08001 * 126.06951 * 180.16331 * 6 5 4 31 31 H 1.07999 * 126.45481 * 179.76109 * 7 6 5 32 32 H 0.97001 * 120.00205 * 5.17029 * 11 9 8 33 33 H 1.09009 * 109.46722 * 300.00645 * 12 11 9 34 34 H 1.08997 * 109.46868 * 59.99599 * 12 11 9 35 35 H 1.09002 * 109.46732 * 299.99833 * 13 12 11 36 36 H 1.08994 * 109.47086 * 59.99874 * 13 12 11 37 37 H 1.08998 * 109.47286 * 299.99900 * 14 13 12 38 38 H 1.09006 * 109.46902 * 59.99701 * 14 13 12 39 39 H 0.97008 * 119.99763 * 0.02562 * 15 14 13 40 40 H 0.96999 * 120.00403 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.7822 1.9591 2.3141 6 6 3.8578 1.7616 3.1133 7 6 4.7836 0.9901 2.4038 8 6 4.2308 0.7292 1.1681 9 6 4.8483 -0.0493 0.0891 10 8 4.2997 -0.1294 -0.9943 11 7 6.0232 -0.6760 0.2975 12 6 6.6958 -1.3587 -0.8105 13 6 7.9993 -1.9832 -0.3087 14 6 8.7021 -2.6957 -1.4660 15 7 9.9505 -3.2932 -0.9857 16 6 10.7542 -3.9877 -1.8500 17 1 10.4679 -4.0946 -2.8859 18 6 11.9373 -4.5533 -1.3950 19 7 12.2864 -4.4226 -0.1327 20 14 13.0340 -5.5000 -2.5742 21 1 14.0090 -4.5699 -3.1982 22 1 13.7647 -6.5571 -1.8301 23 1 12.2000 -6.1256 -3.6317 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 0.0044 27 1 2.6213 1.4026 -0.9314 28 1 1.3586 2.1316 0.0896 29 1 1.8991 2.5223 2.5773 30 1 3.9807 2.1373 4.1184 31 1 5.7493 0.6605 2.7575 32 1 6.4234 -0.6750 1.1811 33 1 6.0461 -2.1409 -1.2033 34 1 6.9170 -0.6400 -1.5995 35 1 8.6490 -1.2013 0.0843 36 1 7.7777 -2.7020 0.4800 37 1 8.0525 -3.4776 -1.8595 38 1 8.9237 -1.9765 -2.2546 39 1 10.2074 -3.1975 -0.0552 40 1 13.1130 -4.8182 0.1853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159974811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 16.909797 kcal Electronic energy + Delta-G solvation = -20264.265330 eV Core-core repulsion = 17079.673004 eV Total energy + Delta-G solvation = -3184.592327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.35842 -40.14412 -37.50971 -36.32885 -35.77966 -33.81509 -32.30919 -31.59990 -29.98552 -27.00513 -26.94495 -24.73571 -23.17062 -22.61602 -21.53078 -21.17319 -20.36594 -19.22850 -18.77263 -17.20245 -16.94238 -16.81561 -16.47107 -16.26427 -15.73020 -15.32808 -15.23391 -15.06273 -14.77627 -14.48412 -14.07053 -13.78034 -13.57392 -13.31015 -13.21571 -12.83666 -12.82198 -12.59959 -12.43823 -12.22529 -12.08349 -12.05731 -11.80087 -11.12909 -10.95134 -10.53317 -10.20462 -9.69978 -9.15379 -9.02574 -7.96944 -5.26353 0.47358 1.06007 1.47504 1.49390 1.57945 1.79496 1.85025 2.37650 2.43428 2.56843 3.36868 3.72322 3.73774 3.78768 3.88713 4.06852 4.19655 4.26105 4.27574 4.44010 4.48967 4.56155 4.59032 4.70531 4.71340 4.85421 4.91618 5.18045 5.25616 5.28583 5.30346 5.37111 5.48295 5.52865 5.62751 5.84196 6.02286 6.25811 6.34492 6.51308 7.14570 7.32132 8.06665 8.30638 9.26665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002578 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.930322 B =10857.764067 C =11461.602923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.189 4.189 3 C 0.130 3.870 4 N -0.413 5.413 5 C 0.026 3.974 6 C -0.220 4.220 7 C -0.138 4.138 8 C -0.088 4.088 9 C 0.581 3.419 10 O -0.585 6.585 11 N -0.708 5.708 12 C 0.138 3.862 13 C -0.119 4.119 14 C 0.153 3.847 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.075 0.925 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.270 1.270 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.203 0.797 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.609 15.211 6.694 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.208 4.208 3 C 0.010 3.990 4 N -0.086 5.086 5 C -0.109 4.109 6 C -0.244 4.244 7 C -0.165 4.165 8 C -0.200 4.200 9 C 0.371 3.629 10 O -0.467 6.467 11 N -0.359 5.359 12 C 0.014 3.986 13 C -0.157 4.157 14 C 0.026 3.974 15 N -0.390 5.390 16 C -0.381 4.381 17 H 0.093 0.907 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.195 1.195 24 H 0.144 0.856 25 H 0.128 0.872 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.220 0.780 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.208 0.792 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.156 15.058 5.409 29.813 hybrid contribution 1.290 -0.814 0.045 1.526 sum -23.865 14.243 5.454 28.323 Atomic orbital electron populations 1.24131 0.94537 1.03852 0.96324 1.22916 0.96749 0.97473 1.03636 1.21163 0.91787 0.97720 0.88311 1.44184 1.12749 1.38078 1.13551 1.22687 1.02416 1.01246 0.84583 1.21188 0.94899 1.06411 1.01866 1.21727 1.01128 1.01704 0.91946 1.20014 0.90922 1.10944 0.98127 1.17336 0.80765 0.78505 0.86340 1.90768 1.63841 1.64482 1.27626 1.45575 1.21876 1.54260 1.14228 1.21102 0.92554 0.96092 0.88850 1.21702 0.95083 1.00210 0.98683 1.20664 0.86741 0.94683 0.95303 1.42548 1.22209 1.64195 1.10074 1.19646 1.00661 1.25065 0.92763 0.90706 1.25600 1.00072 1.03126 0.97998 1.69806 1.25346 1.51373 1.15421 0.85113 0.78682 0.77862 0.77937 1.21253 1.21966 1.19501 0.85648 0.87242 0.89919 0.89484 0.85468 0.78042 0.81791 0.82447 0.74871 0.91901 0.91676 0.90593 0.90778 0.96014 0.95889 0.79213 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 14.32 67.77 0.97 -0.87 16 2 C -0.19 -3.48 9.66 25.64 0.25 -3.23 16 3 C 0.13 2.27 5.83 85.64 0.50 2.76 16 4 N -0.41 -8.14 2.75 -515.08 -1.42 -9.56 16 5 C 0.03 0.38 11.36 83.48 0.95 1.33 16 6 C -0.22 -3.43 10.81 22.01 0.24 -3.19 16 7 C -0.14 -2.65 10.35 22.57 0.23 -2.42 16 8 C -0.09 -2.07 6.87 40.35 0.28 -1.79 16 9 C 0.58 16.30 7.77 86.45 0.67 16.97 16 10 O -0.58 -19.81 14.72 -4.36 -0.06 -19.87 16 11 N -0.71 -17.50 5.53 -467.07 -2.58 -20.08 16 12 C 0.14 3.82 5.68 86.38 0.49 4.31 16 13 C -0.12 -3.60 5.44 30.59 0.17 -3.44 16 14 C 0.15 6.12 6.26 86.38 0.54 6.66 16 15 N -0.75 -38.47 5.60 -343.46 -1.92 -40.39 16 16 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 17 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 19 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 20 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H 0.13 0.86 7.84 -2.91 -0.02 0.84 16 25 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 26 H 0.08 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.09 1.95 6.76 -2.39 -0.02 1.93 16 28 H 0.13 1.21 7.76 -2.39 -0.02 1.19 16 29 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.16 2.40 7.49 -2.91 -0.02 2.37 16 32 H 0.41 8.19 7.42 -92.71 -0.69 7.51 16 33 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.38 20.22 7.67 -92.70 -0.71 19.51 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -73.16 344.54 2.55 -70.61 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.36 Total: 30.25 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.59 Total: -0.19 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.64 Total: -129.30 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.16 2.55 -70.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159974811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.515 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds