Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50702 * 120.00107 * 2 1 4 4 O 1.42895 * 109.47390 * 134.99653 * 3 2 1 5 5 C 1.35516 * 117.00510 * 180.02562 * 4 3 2 6 6 C 1.39432 * 120.46660 * 179.97438 * 5 4 3 7 7 C 1.38202 * 118.50479 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.36623 * 179.97438 * 7 6 5 9 9 N 1.32469 * 119.26878 * 359.74821 * 7 6 5 10 10 C 1.32465 * 120.88570 * 0.50974 * 9 7 6 11 11 N 1.38395 * 119.18844 * 179.75588 * 10 9 7 12 12 C 1.46499 * 119.99933 * 179.72922 * 11 10 9 13 13 H 1.08990 * 109.47400 * 34.99955 * 12 11 10 14 14 C 1.50705 * 109.46758 * 155.00119 * 12 11 10 15 15 H 1.07991 * 119.99976 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99592 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99797 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99577 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47084 * 90.00586 * 18 16 14 20 20 H 1.48501 * 109.46906 * 209.99925 * 18 16 14 21 21 H 1.48496 * 109.47712 * 330.00110 * 18 16 14 22 22 C 1.52998 * 109.46843 * 274.99893 * 12 11 10 23 23 C 1.52999 * 109.47149 * 65.00023 * 22 12 11 24 24 N 1.32486 * 121.62323 * 359.47680 * 10 9 7 25 25 H 1.08004 * 120.00073 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00084 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00202 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46969 * 14.99943 * 3 2 1 29 29 H 1.08999 * 109.47423 * 254.99728 * 3 2 1 30 30 H 1.07998 * 120.75179 * 0.04542 * 6 5 4 31 31 H 1.09004 * 109.46886 * 90.00054 * 8 7 6 32 32 H 1.09002 * 109.47145 * 210.00123 * 8 7 6 33 33 H 1.09000 * 109.47386 * 330.00268 * 8 7 6 34 34 H 0.97005 * 119.99806 * 359.72702 * 11 10 9 35 35 H 0.97008 * 119.99478 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.46925 * 185.00677 * 22 12 11 37 37 H 1.09005 * 109.47184 * 304.99979 * 22 12 11 38 38 H 1.08996 * 109.46997 * 60.00461 * 23 22 12 39 39 H 1.09005 * 109.47118 * 179.97438 * 23 22 12 40 40 H 1.08997 * 109.47338 * 299.99975 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9068 2.3422 1.0787 6 6 4.9644 2.3590 1.9871 7 6 5.7336 3.5032 2.0827 8 6 6.8866 3.5673 3.0510 9 7 5.4491 4.5413 1.3106 10 6 4.4346 4.4982 0.4599 11 7 4.1657 5.6048 -0.3264 12 6 3.0518 5.5744 -1.2774 13 1 2.2336 4.9877 -0.8601 14 6 2.5781 6.9805 -1.5413 15 1 3.0584 7.8134 -1.0494 16 6 1.5314 7.2036 -2.4107 17 7 0.9469 6.1894 -3.0100 18 14 0.9438 8.9464 -2.7372 19 1 1.6934 9.5144 -3.8866 20 1 -0.5072 8.9286 -3.0529 21 1 1.1779 9.7818 -1.5321 22 6 3.5181 4.9388 -2.5887 23 6 3.8815 3.4729 -2.3440 24 7 3.6745 3.4198 0.3393 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 5.1779 1.4972 2.6020 31 1 7.7946 3.2198 2.5582 32 1 7.0247 4.5960 3.3839 33 1 6.6744 2.9324 3.9112 34 1 4.7147 6.4007 -0.2477 35 1 0.2103 6.3463 -3.6214 36 1 2.7168 4.9965 -3.3255 37 1 4.3926 5.4728 -2.9605 38 1 3.0070 2.9390 -1.9723 39 1 4.2133 3.0199 -3.2783 40 1 4.6827 3.4153 -1.6073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = 35.028837 kcal Electronic energy + Delta-G solvation = -21912.088038 eV Core-core repulsion = 18728.281412 eV Total energy + Delta-G solvation = -3183.806626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65723 -38.36506 -36.36082 -34.15220 -33.47538 -32.40103 -31.39482 -29.95005 -28.28856 -26.80668 -26.05863 -23.27407 -22.71679 -21.74188 -19.98879 -19.67093 -18.39491 -16.95147 -16.62320 -16.04268 -15.51527 -15.07072 -14.90925 -14.76376 -14.42206 -13.76602 -13.40498 -13.25510 -13.06893 -12.67734 -12.56376 -12.29205 -12.10414 -11.83797 -11.33352 -11.24438 -11.08422 -10.94591 -10.83299 -10.42720 -10.24614 -10.13915 -9.82105 -9.56835 -9.49830 -9.08847 -8.86270 -8.63013 -8.44758 -7.16715 -6.16900 -4.25162 1.72788 1.87001 2.09599 3.22703 3.29612 3.31902 3.35191 3.78936 4.32478 4.45554 4.58967 4.91388 5.14650 5.15297 5.24629 5.35044 5.58750 5.64326 5.67793 5.74751 5.78501 5.84564 5.95906 6.10952 6.31237 6.38494 6.52205 6.54068 6.60699 6.71215 6.99083 7.10928 7.29836 7.35505 7.45801 7.61896 7.73034 7.80415 7.94286 8.16199 8.55824 8.73540 9.12086 9.41884 10.88497 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.006180 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.111752 B = 4529.467510 C = 6048.537408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C 0.092 3.908 4 O -0.303 6.303 5 C 0.399 3.601 6 C -0.330 4.330 7 C 0.235 3.765 8 C -0.099 4.099 9 N -0.606 5.606 10 C 0.605 3.395 11 N -0.667 5.667 12 C 0.281 3.719 13 H 0.054 0.946 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.134 4.134 24 N -0.606 5.606 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.264 0.736 36 H 0.101 0.899 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -9.586 7.131 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.017 3.983 4 O -0.208 6.208 5 C 0.209 3.791 6 C -0.358 4.358 7 C 0.088 3.912 8 C -0.156 4.156 9 N -0.335 5.335 10 C 0.248 3.752 11 N -0.297 5.297 12 C 0.179 3.821 13 H 0.072 0.928 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.166 4.166 23 C -0.191 4.191 24 N -0.346 5.346 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.157 -9.081 6.363 11.842 hybrid contribution -0.153 0.503 -0.001 0.526 sum 4.004 -8.578 6.362 11.405 Atomic orbital electron populations 1.23882 0.95517 1.02472 0.99256 1.22730 0.95724 0.97754 1.01069 1.21822 0.87600 0.96066 0.92821 1.86172 1.42213 1.33702 1.58670 1.19706 0.86857 0.84834 0.87687 1.21064 1.02572 1.02783 1.09427 1.20989 0.92701 0.86957 0.90593 1.20676 0.94655 1.03721 0.96570 1.67826 1.21460 1.31469 1.12718 1.19064 0.84143 0.86190 0.85801 1.45235 1.34645 1.11310 1.38534 1.18852 0.82752 0.96561 0.83919 0.92849 1.21242 1.17222 0.91834 1.26944 0.92022 1.24844 0.95918 0.97492 0.95246 1.69884 1.23305 1.30041 1.28827 0.86443 0.77926 0.84074 0.78663 1.20507 1.21066 1.19842 1.21954 1.00819 0.92370 1.01491 1.21899 1.00357 0.98937 0.97892 1.67787 1.34748 1.01393 1.30671 0.87958 0.87760 0.86667 0.90562 0.89788 0.84605 0.90151 0.90282 0.90541 0.75967 0.92577 0.88109 0.95046 0.92844 0.95964 0.94931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 14.31 29.02 0.42 -1.57 16 2 C -0.15 -1.97 9.89 -36.02 -0.36 -2.33 16 3 C 0.09 1.45 5.75 36.01 0.21 1.66 16 4 O -0.30 -5.13 10.12 -18.24 -0.18 -5.31 16 5 C 0.40 7.35 7.53 -16.72 -0.13 7.22 16 6 C -0.33 -5.31 9.80 -39.15 -0.38 -5.69 16 7 C 0.23 3.76 6.81 -82.33 -0.56 3.20 16 8 C -0.10 -1.09 10.21 36.00 0.37 -0.72 16 9 N -0.61 -11.56 10.39 -10.22 -0.11 -11.67 16 10 C 0.61 12.73 6.99 -322.87 -2.26 10.47 16 11 N -0.67 -14.65 5.15 -56.94 -0.29 -14.94 16 12 C 0.28 6.91 2.24 -69.08 -0.15 6.76 16 13 H 0.05 1.47 7.50 -51.93 -0.39 1.08 16 14 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 17 N -0.88 -23.97 11.29 55.43 0.63 -23.34 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 23 C -0.13 -2.84 8.43 37.16 0.31 -2.53 16 24 N -0.61 -12.45 5.30 -13.99 -0.07 -12.53 16 25 H 0.10 1.20 7.90 -52.48 -0.41 0.79 16 26 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 29 H 0.08 1.43 5.97 -51.93 -0.31 1.12 16 30 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.40 8.40 8.65 -40.82 -0.35 8.05 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.14 5.50 -51.93 -0.29 0.85 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.70 5.60 -51.93 -0.29 0.41 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -28.25 330.34 -8.83 -37.08 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.68 Total: 9.57 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.08 Total: 0.70 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.15 Total: -62.48 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.18 Total: -5.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.25 -8.83 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.108 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds