Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50702 * 120.00107 * 2 1 4 4 O 1.42895 * 109.47390 * 134.99653 * 3 2 1 5 5 C 1.35516 * 117.00510 * 180.02562 * 4 3 2 6 6 C 1.39432 * 120.46660 * 179.97438 * 5 4 3 7 7 C 1.38202 * 118.50479 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.36623 * 179.97438 * 7 6 5 9 9 N 1.32469 * 119.26878 * 359.74821 * 7 6 5 10 10 C 1.32465 * 120.88570 * 0.50974 * 9 7 6 11 11 N 1.38395 * 119.18844 * 179.75588 * 10 9 7 12 12 C 1.46499 * 119.99933 * 179.72922 * 11 10 9 13 13 H 1.08990 * 109.47400 * 34.99955 * 12 11 10 14 14 C 1.50705 * 109.46758 * 155.00119 * 12 11 10 15 15 H 1.07991 * 119.99976 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99592 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99797 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99577 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47084 * 90.00586 * 18 16 14 20 20 H 1.48501 * 109.46906 * 209.99925 * 18 16 14 21 21 H 1.48496 * 109.47712 * 330.00110 * 18 16 14 22 22 C 1.52998 * 109.46843 * 274.99893 * 12 11 10 23 23 C 1.52999 * 109.47149 * 65.00023 * 22 12 11 24 24 N 1.32486 * 121.62323 * 359.47680 * 10 9 7 25 25 H 1.08004 * 120.00073 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00084 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00202 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46969 * 14.99943 * 3 2 1 29 29 H 1.08999 * 109.47423 * 254.99728 * 3 2 1 30 30 H 1.07998 * 120.75179 * 0.04542 * 6 5 4 31 31 H 1.09004 * 109.46886 * 90.00054 * 8 7 6 32 32 H 1.09002 * 109.47145 * 210.00123 * 8 7 6 33 33 H 1.09000 * 109.47386 * 330.00268 * 8 7 6 34 34 H 0.97005 * 119.99806 * 359.72702 * 11 10 9 35 35 H 0.97008 * 119.99478 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.46925 * 185.00677 * 22 12 11 37 37 H 1.09005 * 109.47184 * 304.99979 * 22 12 11 38 38 H 1.08996 * 109.46997 * 60.00461 * 23 22 12 39 39 H 1.09005 * 109.47118 * 179.97438 * 23 22 12 40 40 H 1.08997 * 109.47338 * 299.99975 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9068 2.3422 1.0787 6 6 4.9644 2.3590 1.9871 7 6 5.7336 3.5032 2.0827 8 6 6.8866 3.5673 3.0510 9 7 5.4491 4.5413 1.3106 10 6 4.4346 4.4982 0.4599 11 7 4.1657 5.6048 -0.3264 12 6 3.0518 5.5744 -1.2774 13 1 2.2336 4.9877 -0.8601 14 6 2.5781 6.9805 -1.5413 15 1 3.0584 7.8134 -1.0494 16 6 1.5314 7.2036 -2.4107 17 7 0.9469 6.1894 -3.0100 18 14 0.9438 8.9464 -2.7372 19 1 1.6934 9.5144 -3.8866 20 1 -0.5072 8.9286 -3.0529 21 1 1.1779 9.7818 -1.5321 22 6 3.5181 4.9388 -2.5887 23 6 3.8815 3.4729 -2.3440 24 7 3.6745 3.4198 0.3393 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 5.1779 1.4972 2.6020 31 1 7.7946 3.2198 2.5582 32 1 7.0247 4.5960 3.3839 33 1 6.6744 2.9324 3.9112 34 1 4.7147 6.4007 -0.2477 35 1 0.2103 6.3463 -3.6214 36 1 2.7168 4.9965 -3.3255 37 1 4.3926 5.4728 -2.9605 38 1 3.0070 2.9390 -1.9723 39 1 4.2133 3.0199 -3.2783 40 1 4.6827 3.4153 -1.6073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = 19.316342 kcal Electronic energy + Delta-G solvation = -21912.769383 eV Core-core repulsion = 18728.281412 eV Total energy + Delta-G solvation = -3184.487971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.08905 -39.72654 -38.07039 -35.26068 -35.10076 -33.96525 -33.14842 -31.50086 -29.46063 -28.67366 -27.24826 -25.14176 -24.21270 -23.18742 -21.53599 -20.96476 -19.92812 -18.44895 -18.30620 -17.42108 -17.09350 -16.83118 -16.28035 -16.12233 -15.93804 -15.37563 -14.75313 -14.67416 -14.41418 -14.03949 -13.83488 -13.65695 -13.51085 -13.20349 -13.03391 -12.87553 -12.82138 -12.51574 -12.23741 -12.09231 -12.00803 -11.66766 -11.56846 -11.13218 -10.97648 -10.64872 -10.51081 -10.25572 -10.05285 -8.76448 -8.18098 -6.33690 0.37995 0.41213 1.08115 1.42661 1.43272 1.53336 2.03861 2.23579 2.45536 3.00406 3.11837 3.26529 3.82112 3.92811 4.05325 4.10211 4.28710 4.46650 4.50486 4.51929 4.53458 4.63185 4.73831 4.85972 4.89947 4.95663 5.02859 5.09733 5.24030 5.42463 5.45880 5.53947 5.56359 5.64882 5.72409 5.81726 5.96611 6.10070 6.18507 6.39724 6.74405 6.89768 7.33760 7.59246 8.86858 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.006180 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.111752 B = 4529.467510 C = 6048.537408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.170 4.170 3 C 0.096 3.904 4 O -0.299 6.299 5 C 0.377 3.623 6 C -0.318 4.318 7 C 0.227 3.773 8 C -0.093 4.093 9 N -0.616 5.616 10 C 0.589 3.411 11 N -0.677 5.677 12 C 0.296 3.704 13 H 0.017 0.983 14 C -0.553 4.553 15 H 0.061 0.939 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.119 4.119 23 C -0.117 4.117 24 N -0.629 5.629 25 H 0.092 0.908 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.171 0.829 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.407 0.593 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -10.591 8.368 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.188 4.188 3 C 0.021 3.979 4 O -0.204 6.204 5 C 0.188 3.812 6 C -0.344 4.344 7 C 0.082 3.918 8 C -0.150 4.150 9 N -0.345 5.345 10 C 0.232 3.768 11 N -0.310 5.310 12 C 0.193 3.807 13 H 0.035 0.965 14 C -0.591 4.591 15 H 0.080 0.920 16 C -0.178 4.178 17 N -0.546 5.546 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.158 4.158 23 C -0.174 4.174 24 N -0.370 5.370 25 H 0.110 0.890 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.188 0.812 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.243 0.757 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.033 -10.131 7.642 13.652 hybrid contribution -0.407 0.717 -0.280 0.871 sum 4.626 -9.414 7.362 12.815 Atomic orbital electron populations 1.24128 0.95088 1.03537 0.96753 1.22713 0.96092 0.96710 1.03246 1.21780 0.87069 0.97411 0.91661 1.86187 1.42262 1.33086 1.58848 1.20177 0.87945 0.84711 0.88330 1.21520 1.00873 1.03836 1.08219 1.21911 0.93665 0.85952 0.90303 1.20837 0.93124 1.04764 0.96304 1.67895 1.20847 1.32916 1.12858 1.19162 0.85100 0.86073 0.86493 1.44896 1.34562 1.12190 1.39304 1.18396 0.82658 0.95253 0.84392 0.96545 1.21548 1.17721 0.92628 1.27199 0.92040 1.25627 0.95964 1.01196 0.94974 1.70008 1.23587 1.31877 1.29166 0.85442 0.77374 0.79530 0.78568 1.19807 1.20776 1.19516 1.21785 0.99581 0.93906 1.00528 1.21708 0.99934 0.97287 0.98452 1.67710 1.35364 1.02051 1.31868 0.88952 0.84553 0.84659 0.92957 0.91551 0.81160 0.88194 0.90111 0.87489 0.75663 0.92486 0.90532 0.95373 0.93431 0.94347 0.95243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 14.31 67.79 0.97 -2.42 16 2 C -0.17 -4.19 9.89 25.66 0.25 -3.94 16 3 C 0.10 3.13 5.75 71.24 0.41 3.54 16 4 O -0.30 -10.08 10.12 -88.19 -0.89 -10.97 16 5 C 0.38 13.80 7.53 84.84 0.64 14.44 16 6 C -0.32 -9.53 9.80 22.55 0.22 -9.31 16 7 C 0.23 6.81 6.81 42.45 0.29 7.10 16 8 C -0.09 -1.71 10.21 71.23 0.73 -0.98 16 9 N -0.62 -23.20 10.39 -186.26 -1.94 -25.14 16 10 C 0.59 25.28 6.99 261.51 1.83 27.11 16 11 N -0.68 -30.82 5.15 -334.06 -1.72 -32.54 16 12 C 0.30 15.21 2.24 44.25 0.10 15.31 16 13 H 0.02 0.97 7.50 -2.39 -0.02 0.95 16 14 C -0.55 -29.83 8.73 25.60 0.22 -29.60 16 15 H 0.06 3.23 7.74 -2.92 -0.02 3.21 16 16 C 0.02 1.24 5.29 84.66 0.45 1.69 16 17 N -0.91 -50.70 11.29 21.45 0.24 -50.45 16 18 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.12 -5.85 5.45 30.59 0.17 -5.69 16 23 C -0.12 -5.10 8.43 71.98 0.61 -4.49 16 24 N -0.63 -26.61 5.30 -310.88 -1.65 -28.26 16 25 H 0.09 2.15 7.90 -2.91 -0.02 2.13 16 26 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.05 1.92 7.84 -2.38 -0.02 1.90 16 29 H 0.07 2.37 5.97 -2.39 -0.01 2.36 16 30 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.41 17.50 8.65 -92.70 -0.80 16.70 16 35 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 36 H 0.08 4.16 5.95 -2.39 -0.01 4.14 16 37 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.05 2.12 5.50 -2.39 -0.01 2.10 16 39 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.03 1.28 5.60 -2.39 -0.01 1.27 16 Total: -1.00 -62.89 330.34 3.20 -59.69 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.24 Total: 30.42 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.88 Total: 12.75 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -5.06 Total: -136.39 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.89 Total: -10.97 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -62.89 3.20 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.005 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds