Wall clock time and date at job start Mon Mar 30 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.53004 * 109.46959 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47007 * 180.02562 * 4 3 2 6 6 N 1.36600 * 111.00103 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00353 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99839 * 0.02562 * 7 6 5 9 9 C 1.47528 * 119.99923 * 180.02562 * 7 6 5 10 10 C 1.39836 * 120.05399 * 180.02562 * 9 7 6 11 11 C 1.37104 * 119.94220 * 180.30000 * 10 9 7 12 12 C 1.39360 * 120.05361 * 359.46713 * 11 10 9 13 13 N 1.38779 * 119.94296 * 180.23370 * 12 11 10 14 14 C 1.36782 * 119.99866 * 0.27448 * 13 12 11 15 15 H 1.08004 * 120.00253 * 0.02562 * 14 13 12 16 16 C 1.38877 * 120.00233 * 180.02562 * 14 13 12 17 17 N 1.31527 * 119.99829 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00157 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47267 * 59.99691 * 18 16 14 20 20 H 1.48507 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46877 * 299.99440 * 18 16 14 22 22 C 1.39358 * 120.11465 * 0.50774 * 12 11 10 23 23 C 1.37102 * 120.05810 * 359.77295 * 22 12 11 24 24 H 1.09001 * 109.47662 * 59.99634 * 1 2 3 25 25 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46665 * 299.99675 * 1 2 3 27 27 H 1.09001 * 109.46488 * 240.00739 * 2 1 3 28 28 H 1.08995 * 109.47011 * 120.00193 * 2 1 3 29 29 H 1.08998 * 109.47315 * 60.00349 * 3 2 1 30 30 H 1.09000 * 109.47667 * 300.00317 * 3 2 1 31 31 H 1.08993 * 109.46970 * 60.00262 * 4 3 2 32 32 H 1.08995 * 109.46687 * 299.99994 * 4 3 2 33 33 H 1.00903 * 111.00002 * 56.04464 * 5 4 3 34 34 H 0.97003 * 119.99818 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.02624 * 0.02562 * 10 9 7 36 36 H 1.07990 * 119.97166 * 179.69688 * 11 10 9 37 37 H 0.96992 * 120.00189 * 180.26975 * 13 12 11 38 38 H 0.96996 * 119.99772 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.96893 * 179.74856 * 22 12 11 40 40 H 1.07998 * 120.03071 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 7 5.4252 2.8639 0.0000 7 6 6.0677 4.0487 0.0000 8 8 5.4318 5.0852 0.0005 9 6 7.5425 4.0880 -0.0006 10 6 8.2103 5.3166 0.0000 11 6 9.5809 5.3505 -0.0067 12 6 10.3084 4.1618 -0.0029 13 7 11.6957 4.1988 -0.0048 14 6 12.3478 5.4012 -0.0048 15 1 11.7831 6.3218 -0.0029 16 6 13.7361 5.4383 -0.0073 17 7 14.4239 4.3172 -0.0091 18 14 14.6266 7.0804 -0.0065 19 1 14.2493 7.8475 1.2077 20 1 16.0933 6.8480 -0.0089 21 1 14.2450 7.8509 -1.2173 22 6 9.6453 2.9362 -0.0029 23 6 8.2748 2.8968 -0.0020 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9288 -0.8908 32 1 3.9336 0.9285 0.8891 33 1 3.6844 3.3433 0.7818 34 1 5.9324 2.0371 -0.0008 35 1 7.6468 6.2380 0.0012 36 1 10.0971 6.2990 -0.0113 37 1 12.2029 3.3721 -0.0061 38 1 15.3935 4.3431 -0.0105 39 1 10.2114 2.0165 -0.0041 40 1 7.7614 1.9467 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:49 Heat of formation + Delta-G solvation = 0.422176 kcal Electronic energy + Delta-G solvation = -20043.980057 eV Core-core repulsion = 16858.672773 eV Total energy + Delta-G solvation = -3185.307284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.60707 -38.21062 -36.82312 -35.11640 -34.86998 -32.23599 -31.28881 -30.05018 -28.75241 -26.98304 -25.03791 -23.18884 -22.16396 -21.70420 -21.41173 -19.82828 -17.95602 -17.64468 -16.82781 -16.47786 -15.99161 -15.01867 -14.90462 -14.60008 -14.14115 -14.00318 -13.81846 -13.58788 -13.16933 -12.86911 -12.67228 -12.60482 -12.45186 -12.02379 -11.86227 -11.47451 -11.37801 -11.32155 -11.30990 -10.97104 -10.80141 -10.52656 -10.44372 -10.24627 -9.87612 -9.25518 -8.93383 -8.18319 -7.84407 -6.88749 -6.82884 -3.96725 1.93551 2.45305 3.03337 3.05418 3.05593 3.07644 3.67825 3.87458 4.54564 4.56535 4.63234 4.67387 4.91640 4.97991 5.02159 5.09051 5.25819 5.31655 5.46168 5.50876 5.55824 5.60558 5.65002 5.80844 5.83128 5.93405 6.02978 6.25785 6.44880 6.68372 6.70254 6.90280 7.04569 7.19521 7.33262 7.37131 7.55248 7.65802 7.91297 7.97950 8.49585 9.00982 9.06928 9.25135 10.32049 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053595 B = 0.002529 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.312839 B =11069.819544 C =11559.061147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.037 3.963 5 N -0.445 5.445 6 N -0.593 5.593 7 C 0.577 3.423 8 O -0.559 6.559 9 C -0.282 4.282 10 C 0.005 3.995 11 C -0.233 4.233 12 C 0.217 3.783 13 N -0.531 5.531 14 C -0.307 4.307 15 H 0.109 0.891 16 C 0.025 3.975 17 N -0.880 5.880 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.269 1.269 22 C -0.246 4.246 23 C -0.023 4.023 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.337 0.663 34 H 0.396 0.604 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.401 0.599 38 H 0.280 0.720 39 H 0.107 0.893 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.753 -8.187 1.022 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.092 4.092 5 N -0.169 5.169 6 N -0.340 5.340 7 C 0.370 3.630 8 O -0.438 6.438 9 C -0.291 4.291 10 C -0.016 4.016 11 C -0.257 4.257 12 C 0.090 3.910 13 N -0.128 5.128 14 C -0.437 4.437 15 H 0.126 0.874 16 C -0.181 4.181 17 N -0.515 5.515 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.270 4.270 23 C -0.044 4.044 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.156 0.844 34 H 0.235 0.765 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.671 -7.245 0.344 17.268 hybrid contribution 1.153 -0.531 0.970 1.598 sum -14.518 -7.776 1.314 16.522 Atomic orbital electron populations 1.21761 0.95589 1.01610 1.02005 1.21476 0.96111 0.96315 1.02163 1.21499 0.93297 0.97197 1.03288 1.22462 0.96331 0.89040 1.01390 1.62044 0.93561 1.13349 1.47944 1.45204 1.00332 1.09533 1.78883 1.18326 0.87733 0.81670 0.75279 1.90676 1.68628 1.32615 1.51855 1.18715 0.89766 0.94489 1.26151 1.20514 0.93236 0.96090 0.91713 1.20241 0.93065 0.96918 1.15436 1.17993 0.83864 0.93824 0.95301 1.41135 1.01903 1.09251 1.60478 1.19882 0.89772 0.86324 1.47704 0.87352 1.25441 0.96651 0.99567 0.96409 1.69642 1.08645 1.26949 1.46283 0.85799 0.78076 0.80414 0.79480 1.19389 1.20522 1.19361 1.19990 0.94102 0.95492 1.17451 1.20379 0.93402 0.95420 0.95149 0.92545 0.92753 0.92721 0.91749 0.92056 0.91728 0.90525 0.90042 0.94527 0.84378 0.76525 0.86766 0.86270 0.76343 0.90970 0.87512 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.11 -0.89 5.47 -26.73 -0.15 -1.04 16 4 C 0.04 0.35 5.79 -3.82 -0.02 0.32 16 5 N -0.44 -5.86 6.73 -10.37 -0.07 -5.93 16 6 N -0.59 -8.72 5.93 30.46 0.18 -8.54 16 7 C 0.58 10.80 7.83 -12.47 -0.10 10.71 16 8 O -0.56 -12.25 16.55 5.28 0.09 -12.17 16 9 C -0.28 -5.39 5.88 -104.92 -0.62 -6.01 16 10 C 0.01 0.11 9.56 -39.40 -0.38 -0.27 16 11 C -0.23 -4.94 9.26 -39.58 -0.37 -5.30 16 12 C 0.22 4.70 6.62 -83.88 -0.56 4.14 16 13 N -0.53 -12.36 5.41 -9.59 -0.05 -12.41 16 14 C -0.31 -7.47 9.55 -15.11 -0.14 -7.62 16 15 H 0.11 2.54 5.65 -52.48 -0.30 2.24 16 16 C 0.02 0.60 5.50 -17.45 -0.10 0.50 16 17 N -0.88 -22.14 13.05 55.49 0.72 -21.42 16 18 Si 0.94 18.84 29.55 -169.99 -5.02 13.81 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.25 -4.69 9.85 -39.58 -0.39 -5.08 16 23 C -0.02 -0.40 9.51 -39.40 -0.37 -0.77 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.34 4.45 8.74 -181.36 -1.59 2.86 16 34 H 0.40 4.84 6.36 -185.15 -1.18 3.66 16 35 H 0.11 2.25 7.64 -52.49 -0.40 1.85 16 36 H 0.12 2.51 5.93 -52.49 -0.31 2.19 16 37 H 0.40 9.36 7.89 -40.82 -0.32 9.04 16 38 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 1.34 6.39 -52.49 -0.34 1.01 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -28.00 337.46 -9.83 -37.83 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -7.79 Total: 15.64 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.98 Total: -11.91 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.78 Total: -48.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.00 -9.83 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.254 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds