Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46899 * 2 1 4 4 N 1.46904 * 109.46966 * 119.99917 * 2 1 3 5 5 C 1.47961 * 110.99955 * 180.02562 * 4 2 1 6 6 C 1.53934 * 86.18042 * 222.41818 * 5 4 2 7 7 N 1.46496 * 113.73461 * 138.07780 * 6 5 4 8 8 C 1.39123 * 119.99994 * 156.89566 * 7 6 5 9 9 C 1.39166 * 119.63123 * 0.02562 * 8 7 6 10 10 C 1.38211 * 119.17276 * 179.97438 * 9 8 7 11 11 C 1.39456 * 118.44543 * 359.97438 * 10 9 8 12 12 O 1.35815 * 120.39952 * 180.02562 * 11 10 9 13 13 C 1.34810 * 117.00309 * 354.49728 * 12 11 10 14 14 H 1.08007 * 119.99837 * 5.05904 * 13 12 11 15 15 C 1.38628 * 120.00392 * 185.06296 * 13 12 11 16 16 N 1.31577 * 119.99500 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00378 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47119 * 59.99407 * 17 15 13 19 19 H 1.48495 * 109.46899 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46596 * 299.99640 * 17 15 13 21 21 C 1.38668 * 119.19517 * 359.97438 * 11 10 9 22 22 N 1.31934 * 120.75676 * 0.02562 * 21 11 10 23 23 C 1.48188 * 111.07162 * 80.56748 * 4 2 1 24 24 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47324 * 300.00242 * 1 2 3 26 26 H 1.08996 * 109.47042 * 60.00301 * 1 2 3 27 27 H 1.08994 * 109.47158 * 239.99625 * 2 1 3 28 28 H 1.09000 * 109.46872 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47028 * 299.99707 * 3 2 1 30 30 H 1.08992 * 109.47145 * 60.00225 * 3 2 1 31 31 H 1.08999 * 113.76390 * 108.09239 * 5 4 2 32 32 H 1.09001 * 113.85554 * 336.74539 * 5 4 2 33 33 H 1.09003 * 113.73217 * 269.25655 * 6 5 4 34 34 H 0.97002 * 120.00254 * 336.90060 * 7 6 5 35 35 H 1.07997 * 120.41323 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.77483 * 179.97438 * 10 9 8 37 37 H 0.97005 * 119.99869 * 180.02562 * 16 15 13 38 38 H 1.07994 * 119.61806 * 179.97438 * 21 11 10 39 39 H 1.09004 * 113.75854 * 23.23531 * 23 4 2 40 40 H 1.08997 * 113.82436 * 251.81164 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4987 -0.7117 1.2340 6 6 3.3664 -2.1744 1.6950 7 7 4.3260 -3.0816 1.0609 8 6 4.6667 -4.2789 1.6823 9 6 4.0907 -4.6073 2.9058 10 6 4.4355 -5.7993 3.5145 11 6 5.3527 -6.6315 2.8734 12 8 5.7193 -7.8122 3.4357 13 6 5.2485 -8.0740 4.6714 14 1 4.5454 -7.3983 5.1358 15 6 5.6667 -9.2105 5.3462 16 7 6.5228 -10.0339 4.7803 17 14 5.0137 -9.5737 7.0583 18 1 3.5361 -9.7110 7.0056 19 1 5.6105 -10.8384 7.5577 20 1 5.3751 -8.4604 7.9723 21 6 5.8851 -6.2393 1.6546 22 7 5.5335 -5.0940 1.1019 23 6 1.9836 -2.1628 1.0179 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9291 -0.0512 1.9867 32 1 3.9640 -0.6004 0.2546 33 1 3.3233 -2.2909 2.7779 34 1 4.7241 -2.8476 0.2078 35 1 3.3825 -3.9394 3.3735 36 1 4.0046 -6.0797 4.4642 37 1 6.8152 -10.8293 5.2523 38 1 6.5963 -6.8783 1.1524 39 1 2.0029 -2.4770 -0.0257 40 1 1.2059 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168315811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = 51.776925 kcal Electronic energy + Delta-G solvation = -20749.256811 eV Core-core repulsion = 17566.176436 eV Total energy + Delta-G solvation = -3183.080375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49389 -39.40595 -37.21334 -35.12882 -32.99451 -32.16773 -31.24776 -28.28387 -27.99468 -26.13542 -25.69281 -25.12916 -22.99976 -21.71628 -20.44885 -19.98450 -18.14465 -17.49342 -16.70529 -16.30205 -15.84365 -15.10684 -14.95578 -14.53983 -14.39364 -13.97030 -13.76656 -13.46608 -13.08515 -13.04058 -12.92012 -12.44310 -12.34873 -12.25851 -12.17656 -11.68550 -11.61466 -11.51633 -11.36106 -11.07496 -10.95277 -10.68790 -10.52884 -9.66093 -9.37219 -9.08267 -8.98301 -8.76207 -8.55266 -6.69294 -6.42444 -3.99899 2.02234 2.39137 3.13811 3.15010 3.17697 3.36847 3.82653 3.98525 4.35152 4.59443 4.60957 4.68832 4.78515 4.92585 5.07585 5.11318 5.19734 5.28705 5.34645 5.38262 5.44777 5.51323 5.55890 5.61182 5.65477 5.74999 5.78682 5.82475 5.92932 5.96490 6.06567 6.15462 6.50885 6.72305 6.81643 7.10115 7.16643 7.26525 7.63543 7.98297 8.08535 8.88380 9.02642 9.71733 10.75360 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.003054 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.082286 B = 9167.123016 C = 9661.261950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 C -0.147 4.147 4 N -0.474 5.474 5 C -0.005 4.005 6 C 0.142 3.858 7 N -0.729 5.729 8 C 0.306 3.694 9 C -0.182 4.182 10 C -0.156 4.156 11 C 0.066 3.934 12 O -0.177 6.177 13 C -0.391 4.391 14 H 0.088 0.912 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C 0.066 3.934 22 N -0.501 5.501 23 C -0.017 4.017 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.395 0.605 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.270 0.730 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 18.297 -6.727 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.204 4.204 4 N -0.197 5.197 5 C -0.134 4.134 6 C 0.033 3.967 7 N -0.366 5.366 8 C 0.074 3.926 9 C -0.206 4.206 10 C -0.183 4.183 11 C 0.011 3.989 12 O -0.080 6.080 13 C -0.468 4.468 14 H 0.105 0.895 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.764 3.236 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.093 4.093 22 N -0.217 5.217 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.230 0.770 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.080 0.920 38 H 0.169 0.831 39 H 0.091 0.909 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.845 18.456 -6.872 21.589 hybrid contribution -0.274 -0.583 0.611 0.888 sum -9.120 17.873 -6.261 21.019 Atomic orbital electron populations 1.21728 0.94025 1.02042 1.01939 1.22170 0.96583 0.95690 0.92114 1.21856 1.01034 0.95284 1.02255 1.68569 1.09728 1.06710 1.34733 1.24324 0.90429 0.97105 1.01574 1.22658 0.87443 0.87786 0.98786 1.43960 1.49365 1.18609 1.24707 1.17930 0.95468 0.88237 0.90946 1.21128 1.04499 0.98721 0.96219 1.21416 1.00240 0.94822 1.01816 1.20254 0.95545 0.88376 0.94746 1.83994 1.64761 1.28492 1.30768 1.21191 1.26207 1.09086 0.90314 0.89476 1.25243 0.96328 0.95252 0.99659 1.70034 1.29787 1.12258 1.37802 0.85806 0.78973 0.78266 0.80527 1.19567 1.20295 1.19559 1.21443 1.01648 0.93092 0.93087 1.66922 1.15211 1.04653 1.34894 1.24704 0.99599 0.89404 1.01075 0.92685 0.91834 0.92461 0.93547 0.92608 0.92260 0.91772 0.88811 0.90986 0.86940 0.76978 0.86422 0.84603 0.92008 0.83123 0.90929 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.37 37.16 0.35 -0.75 16 2 C 0.04 0.37 2.33 -67.71 -0.16 0.21 16 3 C -0.15 -1.07 9.09 37.16 0.34 -0.74 16 4 N -0.47 -4.62 5.98 -230.20 -1.38 -6.00 16 5 C 0.00 -0.04 6.47 -2.76 -0.02 -0.06 16 6 C 0.14 1.60 4.16 -69.61 -0.29 1.31 16 7 N -0.73 -10.13 5.55 -55.01 -0.31 -10.44 16 8 C 0.31 5.55 7.65 -154.90 -1.19 4.36 16 9 C -0.18 -3.32 9.28 -39.25 -0.36 -3.69 16 10 C -0.16 -3.32 9.25 -39.14 -0.36 -3.68 16 11 C 0.07 1.59 6.67 -38.97 -0.26 1.33 16 12 O -0.18 -4.98 9.77 -0.10 0.00 -4.98 16 13 C -0.39 -10.80 9.50 30.88 0.29 -10.50 16 14 H 0.09 2.21 5.26 -52.48 -0.28 1.93 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 17 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 21 C 0.07 1.45 11.14 -17.35 -0.19 1.25 16 22 N -0.50 -10.12 10.39 -12.25 -0.13 -10.25 16 23 C -0.02 -0.18 7.42 -2.61 -0.02 -0.20 16 24 H 0.05 0.46 7.92 -51.93 -0.41 0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 7.63 -51.93 -0.40 0.01 16 28 H 0.05 0.40 7.02 -51.93 -0.36 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.63 7.63 -51.93 -0.40 0.23 16 33 H 0.11 1.33 6.17 -51.93 -0.32 1.01 16 34 H 0.40 5.12 8.84 -40.82 -0.36 4.76 16 35 H 0.12 1.80 6.06 -52.49 -0.32 1.49 16 36 H 0.14 2.83 5.76 -52.49 -0.30 2.53 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.15 3.10 8.06 -52.49 -0.42 2.68 16 39 H 0.07 0.77 7.63 -51.93 -0.40 0.38 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -30.28 329.17 -8.72 -39.00 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.64 Total: 6.97 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.97 Total: -10.17 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -1.05 Total: -51.11 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.28 -8.72 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168315811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.777 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds