Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46899 * 2 1 4 4 N 1.46904 * 109.46966 * 119.99917 * 2 1 3 5 5 C 1.47961 * 110.99955 * 180.02562 * 4 2 1 6 6 C 1.53934 * 86.18042 * 222.41818 * 5 4 2 7 7 N 1.46496 * 113.73461 * 138.07780 * 6 5 4 8 8 C 1.39123 * 119.99994 * 156.89566 * 7 6 5 9 9 C 1.39166 * 119.63123 * 0.02562 * 8 7 6 10 10 C 1.38211 * 119.17276 * 179.97438 * 9 8 7 11 11 C 1.39456 * 118.44543 * 359.97438 * 10 9 8 12 12 O 1.35815 * 120.39952 * 180.02562 * 11 10 9 13 13 C 1.34810 * 117.00309 * 354.49728 * 12 11 10 14 14 H 1.08007 * 119.99837 * 5.05904 * 13 12 11 15 15 C 1.38628 * 120.00392 * 185.06296 * 13 12 11 16 16 N 1.31577 * 119.99500 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00378 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47119 * 59.99407 * 17 15 13 19 19 H 1.48495 * 109.46899 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46596 * 299.99640 * 17 15 13 21 21 C 1.38668 * 119.19517 * 359.97438 * 11 10 9 22 22 N 1.31934 * 120.75676 * 0.02562 * 21 11 10 23 23 C 1.48188 * 111.07162 * 80.56748 * 4 2 1 24 24 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47324 * 300.00242 * 1 2 3 26 26 H 1.08996 * 109.47042 * 60.00301 * 1 2 3 27 27 H 1.08994 * 109.47158 * 239.99625 * 2 1 3 28 28 H 1.09000 * 109.46872 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47028 * 299.99707 * 3 2 1 30 30 H 1.08992 * 109.47145 * 60.00225 * 3 2 1 31 31 H 1.08999 * 113.76390 * 108.09239 * 5 4 2 32 32 H 1.09001 * 113.85554 * 336.74539 * 5 4 2 33 33 H 1.09003 * 113.73217 * 269.25655 * 6 5 4 34 34 H 0.97002 * 120.00254 * 336.90060 * 7 6 5 35 35 H 1.07997 * 120.41323 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.77483 * 179.97438 * 10 9 8 37 37 H 0.97005 * 119.99869 * 180.02562 * 16 15 13 38 38 H 1.07994 * 119.61806 * 179.97438 * 21 11 10 39 39 H 1.09004 * 113.75854 * 23.23531 * 23 4 2 40 40 H 1.08997 * 113.82436 * 251.81164 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4987 -0.7117 1.2340 6 6 3.3664 -2.1744 1.6950 7 7 4.3260 -3.0816 1.0609 8 6 4.6667 -4.2789 1.6823 9 6 4.0907 -4.6073 2.9058 10 6 4.4355 -5.7993 3.5145 11 6 5.3527 -6.6315 2.8734 12 8 5.7193 -7.8122 3.4357 13 6 5.2485 -8.0740 4.6714 14 1 4.5454 -7.3983 5.1358 15 6 5.6667 -9.2105 5.3462 16 7 6.5228 -10.0339 4.7803 17 14 5.0137 -9.5737 7.0583 18 1 3.5361 -9.7110 7.0056 19 1 5.6105 -10.8384 7.5577 20 1 5.3751 -8.4604 7.9723 21 6 5.8851 -6.2393 1.6546 22 7 5.5335 -5.0940 1.1019 23 6 1.9836 -2.1628 1.0179 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9291 -0.0512 1.9867 32 1 3.9640 -0.6004 0.2546 33 1 3.3233 -2.2909 2.7779 34 1 4.7241 -2.8476 0.2078 35 1 3.3825 -3.9394 3.3735 36 1 4.0046 -6.0797 4.4642 37 1 6.8152 -10.8293 5.2523 38 1 6.5963 -6.8783 1.1524 39 1 2.0029 -2.4770 -0.0257 40 1 1.2059 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168315811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = 30.261563 kcal Electronic energy + Delta-G solvation = -20750.189787 eV Core-core repulsion = 17566.176436 eV Total energy + Delta-G solvation = -3184.013351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54060 -40.87910 -38.95117 -36.17915 -34.36715 -33.79242 -32.90412 -29.78451 -28.64446 -27.47037 -26.75110 -26.42314 -24.59173 -23.23137 -21.35983 -20.88989 -19.96785 -19.11041 -17.92758 -17.67319 -16.98810 -16.40709 -16.22522 -15.88643 -15.56366 -15.48174 -15.23655 -14.67586 -14.38723 -14.33388 -14.02469 -13.77936 -13.52905 -13.34170 -13.19679 -12.97468 -12.81130 -12.72141 -12.45170 -12.17090 -12.09846 -11.73102 -11.57561 -11.48446 -10.95987 -10.59979 -10.40206 -10.27821 -9.83775 -8.41873 -8.27091 -6.06888 0.37017 0.72925 1.38540 1.49013 1.54366 2.16749 2.25777 2.89171 2.96506 3.19252 3.53467 3.58623 3.77353 3.84939 3.95097 4.04334 4.09350 4.17446 4.32316 4.38122 4.42231 4.45172 4.66483 4.78845 4.82936 4.87101 4.91707 4.92492 4.97919 5.01258 5.06468 5.14786 5.30097 5.35687 5.48372 5.50730 5.58028 6.01835 6.07677 6.25609 6.72690 7.02250 7.32182 7.82869 8.81214 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.003054 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.082286 B = 9167.123016 C = 9661.261950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.040 3.960 3 C -0.143 4.143 4 N -0.479 5.479 5 C 0.006 3.994 6 C 0.131 3.869 7 N -0.713 5.713 8 C 0.326 3.674 9 C -0.178 4.178 10 C -0.150 4.150 11 C 0.026 3.974 12 O -0.227 6.227 13 C -0.411 4.411 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.017 2.983 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.257 1.257 21 C 0.063 3.937 22 N -0.513 5.513 23 C -0.012 4.012 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.403 0.597 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.271 0.729 38 H 0.152 0.848 39 H 0.072 0.928 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 21.210 -6.560 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.201 4.201 4 N -0.203 5.203 5 C -0.124 4.124 6 C 0.024 3.976 7 N -0.351 5.351 8 C 0.091 3.909 9 C -0.202 4.202 10 C -0.177 4.177 11 C -0.027 4.027 12 O -0.134 6.134 13 C -0.487 4.487 14 H 0.119 0.881 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.836 3.164 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.094 4.094 22 N -0.230 5.230 23 C -0.143 4.143 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.239 0.761 35 H 0.172 0.828 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.169 0.831 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.625 21.454 -6.752 24.875 hybrid contribution 0.160 -1.115 0.321 1.171 sum -10.465 20.339 -6.431 23.760 Atomic orbital electron populations 1.21717 0.93658 1.01746 1.02418 1.22248 0.96930 0.96232 0.91446 1.21833 1.01125 0.94455 1.02683 1.68602 1.09957 1.06126 1.35581 1.24304 0.90400 0.95344 1.02307 1.22945 0.87344 0.88490 0.98807 1.44146 1.49009 1.17165 1.24731 1.18349 0.93299 0.88646 0.90582 1.21429 1.04649 0.98011 0.96081 1.21589 0.99109 0.95272 1.01750 1.20619 0.97572 0.88608 0.95943 1.83959 1.66944 1.30890 1.31566 1.21732 1.26598 1.09723 0.90694 0.88110 1.26534 0.96527 0.94777 1.04246 1.70190 1.32390 1.13331 1.40112 0.84672 0.78767 0.78308 0.74641 1.18141 1.19938 1.18175 1.21522 1.01553 0.93702 0.92609 1.67028 1.16414 1.04496 1.35099 1.24621 0.98640 0.90137 1.00884 0.93354 0.92221 0.91164 0.93571 0.92408 0.91090 0.92146 0.87881 0.89967 0.86887 0.76055 0.82767 0.84385 0.91958 0.83102 0.90965 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.37 71.98 0.67 -1.15 16 2 C 0.04 0.57 2.33 44.92 0.10 0.67 16 3 C -0.14 -1.67 9.09 71.98 0.65 -1.01 16 4 N -0.48 -7.85 5.98 -882.22 -5.28 -13.13 16 5 C 0.01 0.09 6.47 86.41 0.56 0.65 16 6 C 0.13 2.52 4.16 46.57 0.19 2.71 16 7 N -0.71 -17.63 5.55 -327.96 -1.82 -19.45 16 8 C 0.33 11.11 7.65 133.03 1.02 12.12 16 9 C -0.18 -6.09 9.28 22.49 0.21 -5.88 16 10 C -0.15 -6.34 9.25 22.56 0.21 -6.13 16 11 C 0.03 1.26 6.67 22.67 0.15 1.41 16 12 O -0.23 -13.45 9.77 -23.26 -0.23 -13.68 16 13 C -0.41 -23.44 9.50 67.91 0.64 -22.80 16 14 H 0.10 5.18 5.26 -2.91 -0.02 5.17 16 15 C -0.02 -1.32 5.49 84.82 0.47 -0.85 16 16 N -0.92 -56.24 13.67 21.61 0.30 -55.95 16 17 Si 1.02 42.22 29.55 68.60 2.03 44.25 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 C 0.06 2.82 11.14 84.78 0.94 3.77 16 22 N -0.51 -20.29 10.39 -192.67 -2.00 -22.29 16 23 C -0.01 -0.22 7.42 86.38 0.64 0.42 16 24 H 0.05 0.70 7.92 -2.39 -0.02 0.68 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.67 7.63 -2.39 -0.02 0.65 16 28 H 0.06 0.65 7.02 -2.39 -0.02 0.63 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.11 7.63 -2.39 -0.02 1.10 16 33 H 0.11 2.23 6.17 -2.39 -0.01 2.22 16 34 H 0.40 9.15 8.84 -92.71 -0.82 8.33 16 35 H 0.15 4.13 6.06 -2.91 -0.02 4.12 16 36 H 0.14 5.68 5.76 -2.91 -0.02 5.67 16 37 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 39 H 0.07 1.32 7.63 -2.38 -0.02 1.31 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.14 329.17 -0.30 -68.44 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.24 Total: 27.87 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.47 Total: -16.07 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -8.80 Total: -110.81 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.23 Total: -13.68 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.14 -0.30 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168315811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.703 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds