Wall clock time and date at job start Mon Mar 30 2020 02:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 H 1.09000 * 109.47043 * 304.34752 * 3 2 1 5 5 C 1.50702 * 109.47147 * 184.34908 * 3 2 1 6 6 H 1.08005 * 119.99905 * 240.00510 * 5 3 2 7 7 C 1.37872 * 120.00049 * 59.99675 * 5 3 2 8 8 N 1.31516 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47249 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46833 * 120.00061 * 9 7 5 12 12 H 1.48496 * 109.47245 * 239.99917 * 9 7 5 13 13 N 1.46899 * 109.47050 * 64.34924 * 3 2 1 14 14 C 1.46900 * 110.99737 * 207.57989 * 13 3 2 15 15 H 1.09000 * 109.68444 * 33.58153 * 14 13 3 16 16 C 1.53318 * 109.72078 * 154.16644 * 14 13 3 17 17 C 1.52731 * 108.39197 * 189.64818 * 16 14 13 18 18 C 1.50632 * 110.56356 * 308.83934 * 17 16 14 19 19 C 1.38876 * 117.72954 * 197.74713 * 18 17 16 20 20 C 1.38165 * 120.52312 * 180.23864 * 19 18 17 21 21 F 1.35098 * 120.13465 * 180.02562 * 20 19 18 22 22 C 1.38483 * 119.71659 * 0.03385 * 20 19 18 23 23 C 1.37885 * 119.74585 * 359.88423 * 22 20 19 24 24 C 1.37679 * 122.56085 * 17.79119 * 18 17 16 25 25 C 1.50638 * 122.55438 * 359.27467 * 24 18 17 26 26 H 1.09003 * 109.47109 * 174.93858 * 1 2 3 27 27 H 1.09001 * 109.46910 * 294.93697 * 1 2 3 28 28 H 1.08996 * 109.46740 * 54.93423 * 1 2 3 29 29 H 1.08998 * 109.47036 * 240.00246 * 2 1 3 30 30 H 1.08998 * 109.46986 * 120.00343 * 2 1 3 31 31 H 0.96998 * 119.99573 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00411 * 83.62591 * 13 3 2 33 33 H 1.08994 * 109.71040 * 69.89951 * 16 14 13 34 34 H 1.09007 * 109.64230 * 309.35334 * 16 14 13 35 35 H 1.09004 * 109.24992 * 188.57286 * 17 16 14 36 36 H 1.09002 * 109.25402 * 69.11346 * 17 16 14 37 37 H 1.08000 * 119.73963 * 0.21208 * 19 18 17 38 38 H 1.07997 * 120.12457 * 179.86217 * 22 20 19 39 39 H 1.08006 * 119.71139 * 179.97438 * 23 22 20 40 40 H 1.08999 * 109.25921 * 138.08223 * 25 24 18 41 41 H 1.08999 * 109.25145 * 257.50871 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6145 1.9783 -0.8485 5 6 3.5432 1.4439 -0.1077 6 1 4.1402 1.8914 0.6732 7 6 4.1563 0.8738 -1.2031 8 7 3.4294 0.3292 -2.1543 9 14 6.0196 0.8749 -1.3363 10 1 6.6007 1.5436 -0.1444 11 1 6.5116 -0.5245 -1.4072 12 1 6.4278 1.6058 -2.5628 13 7 1.6380 2.1040 1.2485 14 6 1.5017 3.5539 1.0557 15 1 1.1418 3.7580 0.0473 16 6 0.5142 4.1216 2.0820 17 6 0.2098 5.5707 1.7074 18 6 1.4865 6.3438 1.5036 19 6 1.4137 7.7304 1.5316 20 6 2.5484 8.4965 1.3463 21 9 2.4687 9.8448 1.3756 22 6 3.7677 7.8764 1.1302 23 6 3.8399 6.4997 1.1041 24 6 2.6999 5.7283 1.2934 25 6 2.8549 4.2302 1.2656 26 1 -0.3633 -1.0237 -0.0907 27 1 -0.3633 0.4333 0.9319 28 1 -0.3633 0.5904 -0.8411 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8609 -0.0722 -2.9247 32 1 2.2875 1.8976 1.9925 33 1 0.9568 4.0849 3.0774 34 1 -0.4060 3.5375 2.0672 35 1 -0.3677 6.0348 2.5070 36 1 -0.3726 5.5891 0.7862 37 1 0.4625 8.2136 1.6992 38 1 4.6584 8.4688 0.9823 39 1 4.7910 6.0166 0.9351 40 1 3.5252 3.9531 0.4519 41 1 3.2812 3.8954 2.2113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168412192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:01 Heat of formation + Delta-G solvation = -46.197898 kcal Electronic energy + Delta-G solvation = -21661.892763 eV Core-core repulsion = 18454.643920 eV Total energy + Delta-G solvation = -3207.248843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.83210 -39.86074 -36.93558 -34.70151 -32.62163 -31.78347 -30.67334 -29.40946 -27.53466 -25.87179 -23.42789 -22.78343 -22.27321 -21.56488 -19.74820 -19.10630 -17.07943 -16.62706 -16.36390 -15.60699 -15.40141 -14.88964 -14.49810 -14.24721 -13.78057 -13.77033 -13.29885 -13.11200 -13.00462 -12.72808 -12.43642 -12.14219 -11.87031 -11.42469 -11.32092 -11.17326 -11.12556 -11.00523 -10.71697 -10.66143 -10.39339 -10.28760 -10.09567 -9.58896 -9.39795 -9.01086 -8.80881 -8.41159 -8.27708 -7.30672 -6.03174 -4.15619 1.26939 1.28976 3.22413 3.31908 3.33139 3.64939 4.29959 4.35546 4.71727 4.83740 4.97694 5.16624 5.23036 5.24304 5.29769 5.40251 5.51999 5.78551 5.86414 5.88280 6.04461 6.08241 6.13631 6.22717 6.29705 6.34568 6.38806 6.45788 6.49459 6.69418 6.72285 6.72713 6.87152 7.04192 7.13351 7.16265 7.43289 7.57345 7.75254 8.07431 8.11543 8.31282 8.63514 8.97444 9.51954 10.97122 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.005278 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.812247 B = 5304.098894 C = 6591.607600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.101 3.899 15 H 0.072 0.928 16 C -0.109 4.109 17 C -0.080 4.080 18 C -0.049 4.049 19 C -0.157 4.157 20 C 0.083 3.917 21 F -0.147 7.147 22 C -0.158 4.158 23 C -0.093 4.093 24 C -0.067 4.067 25 C -0.111 4.111 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 10.817 6.998 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.310 5.310 14 C -0.011 4.011 15 H 0.091 0.909 16 C -0.147 4.147 17 C -0.117 4.117 18 C -0.049 4.049 19 C -0.176 4.176 20 C 0.064 3.936 21 F -0.126 7.126 22 C -0.177 4.177 23 C -0.111 4.111 24 C -0.068 4.068 25 C -0.149 4.149 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.213 10.616 6.717 13.250 hybrid contribution 2.203 0.632 -0.315 2.313 sum -2.010 11.247 6.402 13.097 Atomic orbital electron populations 1.21688 0.99050 0.98239 1.00335 1.21504 0.92052 0.99341 1.01629 1.19226 0.92830 0.91165 0.86111 0.95061 1.21923 0.92613 1.37906 1.05716 0.92534 1.24928 0.97725 0.95035 0.95783 1.69886 1.34732 1.38039 1.09527 0.86670 0.86354 0.77814 0.77930 1.19898 1.20989 1.21105 1.60962 1.53932 1.05899 1.10229 1.21392 0.92347 0.89067 0.98254 0.90940 1.21605 1.00533 0.93410 0.99199 1.20517 0.93582 0.95681 1.01946 1.19551 0.95383 0.92183 0.97798 1.21095 0.97637 0.93917 1.04956 1.17556 0.95039 0.76589 1.04439 1.91461 1.97158 1.29647 1.94309 1.21017 0.96571 0.95595 1.04503 1.21142 0.98988 0.92497 0.98450 1.19978 0.92028 0.97010 0.97811 1.21455 1.01228 0.88962 1.03258 0.95755 0.93465 0.94516 0.89259 0.95119 0.92947 0.85438 0.92293 0.90769 0.90915 0.90360 0.85260 0.85209 0.85118 0.88577 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.73 37.16 0.36 -2.34 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.60 16 3 C 0.21 4.96 1.99 -68.87 -0.14 4.82 16 4 H 0.03 0.82 7.37 -51.93 -0.38 0.43 16 5 C -0.54 -13.56 7.22 -34.44 -0.25 -13.81 16 6 H 0.06 1.39 6.92 -52.48 -0.36 1.02 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.53 16 9 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.07 5.59 -100.92 -0.56 -13.63 16 14 C 0.10 1.70 2.49 -67.68 -0.17 1.53 16 15 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 16 C -0.11 -1.51 5.59 -26.70 -0.15 -1.66 16 17 C -0.08 -0.98 5.67 -28.05 -0.16 -1.14 16 18 C -0.05 -0.67 5.74 -104.62 -0.60 -1.27 16 19 C -0.16 -2.04 9.59 -39.37 -0.38 -2.41 16 20 C 0.08 1.12 7.30 -39.52 -0.29 0.83 16 21 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 22 C -0.16 -2.07 10.03 -39.62 -0.40 -2.46 16 23 C -0.09 -1.29 9.60 -39.45 -0.38 -1.67 16 24 C -0.07 -1.00 5.74 -104.60 -0.60 -1.60 16 25 C -0.11 -1.81 4.37 -28.05 -0.12 -1.93 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 2.31 5.97 -51.93 -0.31 2.00 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.33 6.26 7.94 -39.29 -0.31 5.95 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.13 1.41 8.05 -52.49 -0.42 0.99 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.67 8.05 -52.48 -0.42 1.25 16 40 H 0.10 1.82 6.66 -51.93 -0.35 1.47 16 41 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -26.08 328.23 -9.75 -35.83 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.27 Total: 7.04 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.51 Total: -24.03 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.06 Total: -37.17 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.08 -9.75 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168412192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.365 kcal (2) G-P(sol) polarization free energy of solvation -26.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds