Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 H 1.09000 * 109.47043 * 304.34752 * 3 2 1 5 5 C 1.50702 * 109.47147 * 184.34908 * 3 2 1 6 6 H 1.08005 * 119.99905 * 240.00510 * 5 3 2 7 7 C 1.37872 * 120.00049 * 59.99675 * 5 3 2 8 8 N 1.31516 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47249 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46833 * 120.00061 * 9 7 5 12 12 H 1.48496 * 109.47245 * 239.99917 * 9 7 5 13 13 N 1.46899 * 109.47050 * 64.34924 * 3 2 1 14 14 C 1.46900 * 110.99737 * 207.57989 * 13 3 2 15 15 H 1.09000 * 109.68444 * 33.58153 * 14 13 3 16 16 C 1.53318 * 109.72078 * 154.16644 * 14 13 3 17 17 C 1.52731 * 108.39197 * 189.64818 * 16 14 13 18 18 C 1.50632 * 110.56356 * 308.83934 * 17 16 14 19 19 C 1.38876 * 117.72954 * 197.74713 * 18 17 16 20 20 C 1.38165 * 120.52312 * 180.23864 * 19 18 17 21 21 F 1.35098 * 120.13465 * 180.02562 * 20 19 18 22 22 C 1.38483 * 119.71659 * 0.03385 * 20 19 18 23 23 C 1.37885 * 119.74585 * 359.88423 * 22 20 19 24 24 C 1.37679 * 122.56085 * 17.79119 * 18 17 16 25 25 C 1.50638 * 122.55438 * 359.27467 * 24 18 17 26 26 H 1.09003 * 109.47109 * 174.93858 * 1 2 3 27 27 H 1.09001 * 109.46910 * 294.93697 * 1 2 3 28 28 H 1.08996 * 109.46740 * 54.93423 * 1 2 3 29 29 H 1.08998 * 109.47036 * 240.00246 * 2 1 3 30 30 H 1.08998 * 109.46986 * 120.00343 * 2 1 3 31 31 H 0.96998 * 119.99573 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00411 * 83.62591 * 13 3 2 33 33 H 1.08994 * 109.71040 * 69.89951 * 16 14 13 34 34 H 1.09007 * 109.64230 * 309.35334 * 16 14 13 35 35 H 1.09004 * 109.24992 * 188.57286 * 17 16 14 36 36 H 1.09002 * 109.25402 * 69.11346 * 17 16 14 37 37 H 1.08000 * 119.73963 * 0.21208 * 19 18 17 38 38 H 1.07997 * 120.12457 * 179.86217 * 22 20 19 39 39 H 1.08006 * 119.71139 * 179.97438 * 23 22 20 40 40 H 1.08999 * 109.25921 * 138.08223 * 25 24 18 41 41 H 1.08999 * 109.25145 * 257.50871 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6145 1.9783 -0.8485 5 6 3.5432 1.4439 -0.1077 6 1 4.1402 1.8914 0.6732 7 6 4.1563 0.8738 -1.2031 8 7 3.4294 0.3292 -2.1543 9 14 6.0196 0.8749 -1.3363 10 1 6.6007 1.5436 -0.1444 11 1 6.5116 -0.5245 -1.4072 12 1 6.4278 1.6058 -2.5628 13 7 1.6380 2.1040 1.2485 14 6 1.5017 3.5539 1.0557 15 1 1.1418 3.7580 0.0473 16 6 0.5142 4.1216 2.0820 17 6 0.2098 5.5707 1.7074 18 6 1.4865 6.3438 1.5036 19 6 1.4137 7.7304 1.5316 20 6 2.5484 8.4965 1.3463 21 9 2.4687 9.8448 1.3756 22 6 3.7677 7.8764 1.1302 23 6 3.8399 6.4997 1.1041 24 6 2.6999 5.7283 1.2934 25 6 2.8549 4.2302 1.2656 26 1 -0.3633 -1.0237 -0.0907 27 1 -0.3633 0.4333 0.9319 28 1 -0.3633 0.5904 -0.8411 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8609 -0.0722 -2.9247 32 1 2.2875 1.8976 1.9925 33 1 0.9568 4.0849 3.0774 34 1 -0.4060 3.5375 2.0672 35 1 -0.3677 6.0348 2.5070 36 1 -0.3726 5.5891 0.7862 37 1 0.4625 8.2136 1.6992 38 1 4.6584 8.4688 0.9823 39 1 4.7910 6.0166 0.9351 40 1 3.5252 3.9531 0.4519 41 1 3.2812 3.8954 2.2113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168412192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = -58.269280 kcal Electronic energy + Delta-G solvation = -21662.416217 eV Core-core repulsion = 18454.643920 eV Total energy + Delta-G solvation = -3207.772298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88245 -40.99276 -38.41225 -36.18624 -34.05177 -33.41225 -32.11176 -30.56555 -28.97715 -27.58166 -24.73091 -24.36905 -23.36082 -22.83556 -21.46167 -20.47003 -18.50406 -18.11896 -17.49643 -16.89157 -16.61956 -16.46570 -15.82989 -15.59335 -15.16379 -15.02044 -14.77263 -14.50051 -14.22544 -14.04785 -13.76492 -13.58439 -13.17806 -13.11680 -12.92685 -12.86973 -12.55148 -12.40352 -12.21210 -12.11414 -11.85418 -11.78458 -11.52251 -11.38135 -11.07638 -10.80355 -10.41546 -9.83197 -9.39380 -8.97361 -8.01122 -6.21118 0.18451 0.25812 1.37191 1.41446 1.49332 2.41937 2.58266 3.19353 3.25813 3.58763 3.70577 3.91419 4.00585 4.09049 4.19467 4.29143 4.34233 4.60129 4.65217 4.69340 4.72544 4.81114 4.92733 4.97164 5.01095 5.05002 5.10516 5.14196 5.20800 5.24863 5.30441 5.45877 5.47180 5.52275 5.60526 5.69661 5.71070 5.83164 5.97725 6.16810 6.26464 6.46995 6.89752 7.09875 7.49816 8.95677 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.005278 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.812247 B = 5304.098894 C = 6591.607600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.100 3.900 15 H 0.047 0.953 16 C -0.099 4.099 17 C -0.076 4.076 18 C -0.053 4.053 19 C -0.154 4.154 20 C 0.075 3.925 21 F -0.147 7.147 22 C -0.158 4.158 23 C -0.102 4.102 24 C -0.087 4.087 25 C -0.099 4.099 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.063 0.937 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 12.136 8.489 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.301 5.301 14 C -0.011 4.011 15 H 0.066 0.934 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.053 4.053 19 C -0.173 4.173 20 C 0.056 3.944 21 F -0.126 7.126 22 C -0.177 4.177 23 C -0.120 4.120 24 C -0.088 4.088 25 C -0.137 4.137 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.708 11.950 8.226 15.253 hybrid contribution 2.350 0.278 -0.776 2.491 sum -2.358 12.228 7.450 14.512 Atomic orbital electron populations 1.21545 0.96514 0.99346 1.00659 1.21375 0.94325 0.98669 0.99915 1.18964 0.91687 0.91283 0.86623 0.98592 1.22230 0.93814 1.36829 1.05414 0.92366 1.25612 1.01426 0.95166 0.95804 1.70020 1.36117 1.39145 1.10034 0.85767 0.82000 0.77559 0.77860 1.19045 1.21015 1.21326 1.60915 1.53401 1.07384 1.08379 1.21429 0.93695 0.87786 0.98201 0.93436 1.21496 0.99500 0.94429 0.98232 1.20546 0.93219 0.94332 1.03219 1.19712 0.95352 0.92786 0.97469 1.21310 0.98534 0.93473 1.03937 1.17734 0.95482 0.76679 1.04473 1.91464 1.97175 1.29648 1.94311 1.21209 0.97395 0.95302 1.03756 1.21236 0.99008 0.93028 0.98688 1.19935 0.93265 0.95967 0.99607 1.21201 0.99995 0.90511 1.02032 0.94044 0.92118 0.95291 0.92397 0.95278 0.93187 0.85151 0.91490 0.90379 0.87951 0.89952 0.82865 0.83311 0.84731 0.91892 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.73 71.98 0.70 -4.13 16 2 C -0.10 -4.85 5.45 30.60 0.17 -4.69 16 3 C 0.22 10.57 1.99 44.17 0.09 10.66 16 4 H 0.00 -0.21 7.37 -2.39 -0.02 -0.23 16 5 C -0.54 -27.73 7.22 25.60 0.18 -27.55 16 6 H 0.06 2.89 6.92 -2.91 -0.02 2.87 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.41 11.30 21.45 0.24 -51.16 16 9 Si 0.94 42.37 29.54 68.60 2.03 44.40 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.67 -25.76 5.59 -473.22 -2.64 -28.41 16 14 C 0.10 3.36 2.49 44.93 0.11 3.47 16 15 H 0.05 1.84 7.34 -2.39 -0.02 1.82 16 16 C -0.10 -2.53 5.59 30.61 0.17 -2.36 16 17 C -0.08 -1.65 5.67 29.74 0.17 -1.48 16 18 C -0.05 -1.35 5.74 -19.86 -0.11 -1.46 16 19 C -0.15 -3.57 9.59 22.41 0.21 -3.36 16 20 C 0.08 1.88 7.30 22.31 0.16 2.04 16 21 F -0.15 -3.67 17.27 44.97 0.78 -2.90 16 22 C -0.16 -3.86 10.03 22.24 0.22 -3.64 16 23 C -0.10 -2.74 9.60 22.35 0.21 -2.52 16 24 C -0.09 -2.52 5.74 -19.85 -0.11 -2.63 16 25 C -0.10 -3.25 4.37 29.74 0.13 -3.12 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 2.20 7.88 -2.39 -0.02 2.18 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 3.08 5.97 -2.39 -0.01 3.07 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.33 12.48 7.94 -89.69 -0.71 11.77 16 33 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.10 1.68 8.12 -2.38 -0.02 1.66 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.15 2.77 8.05 -2.91 -0.02 2.75 16 38 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.13 3.41 8.05 -2.91 -0.02 3.39 16 40 H 0.06 2.46 6.66 -2.39 -0.02 2.45 16 41 H 0.08 2.37 7.93 -2.39 -0.02 2.35 16 Total: -1.00 -56.46 328.23 3.47 -52.99 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.31 Total: 24.36 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 2.76 Total: -39.28 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.40 Total: -79.57 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -56.46 3.47 -52.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168412192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.277 kcal (2) G-P(sol) polarization free energy of solvation -56.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds