Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 H 1.08999 * 109.47474 * 55.33702 * 3 2 1 5 5 C 1.50708 * 109.46750 * 175.33662 * 3 2 1 6 6 H 1.07997 * 119.99953 * 120.00373 * 5 3 2 7 7 C 1.37873 * 119.99779 * 299.99606 * 5 3 2 8 8 N 1.31517 * 119.99779 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00264 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47283 * 90.00118 * 9 7 5 11 11 H 1.48504 * 109.47279 * 209.99687 * 9 7 5 12 12 H 1.48501 * 109.47553 * 329.99871 * 9 7 5 13 13 N 1.46901 * 109.47164 * 295.33252 * 3 2 1 14 14 C 1.46904 * 110.99798 * 152.25726 * 13 3 2 15 15 H 1.08993 * 109.67537 * 327.29510 * 14 13 3 16 16 C 1.53314 * 109.70874 * 206.76149 * 14 13 3 17 17 C 1.52728 * 108.39046 * 170.43235 * 16 14 13 18 18 C 1.50634 * 110.58941 * 51.16231 * 17 16 14 19 19 C 1.38884 * 117.73772 * 162.30999 * 18 17 16 20 20 C 1.38159 * 120.52184 * 179.40335 * 19 18 17 21 21 F 1.35103 * 120.13444 * 180.02562 * 20 19 18 22 22 C 1.38482 * 119.71988 * 0.02562 * 20 19 18 23 23 C 1.37888 * 119.74574 * 0.13241 * 22 20 19 24 24 C 1.37678 * 122.55300 * 341.97137 * 18 17 16 25 25 C 1.50638 * 122.54922 * 1.07875 * 24 18 17 26 26 H 1.08994 * 109.47086 * 178.09682 * 1 2 3 27 27 H 1.09001 * 109.47273 * 298.09527 * 1 2 3 28 28 H 1.08997 * 109.47040 * 58.09310 * 1 2 3 29 29 H 1.08992 * 109.47185 * 239.99961 * 2 1 3 30 30 H 1.09001 * 109.47244 * 119.99970 * 2 1 3 31 31 H 0.97006 * 120.00252 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99559 * 28.31103 * 13 3 2 33 33 H 1.08998 * 109.68193 * 290.15938 * 16 14 13 34 34 H 1.08999 * 109.68182 * 50.70726 * 16 14 13 35 35 H 1.09003 * 109.25388 * 290.87261 * 17 16 14 36 36 H 1.09001 * 109.25649 * 171.44566 * 17 16 14 37 37 H 1.07993 * 119.73891 * 359.42038 * 19 18 17 38 38 H 1.08000 * 120.12776 * 180.10614 * 22 20 19 39 39 H 1.08002 * 119.71100 * 180.02562 * 23 22 20 40 40 H 1.08999 * 109.25129 * 102.27957 * 25 24 18 41 41 H 1.09001 * 109.25170 * 221.71200 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6100 1.9800 0.8452 5 6 3.5426 1.4441 0.1155 6 1 4.1436 1.8902 -0.6630 7 6 4.1500 0.8761 1.2152 8 7 5.4613 0.8778 1.3163 9 14 3.1105 0.1040 2.5616 10 1 2.8880 -1.3316 2.2534 11 1 3.8150 0.2273 3.8631 12 1 1.8022 0.8023 2.6388 13 7 1.6445 2.1017 -1.2518 14 6 1.5033 3.5516 -1.0615 15 1 1.1513 3.7564 -0.0506 16 6 0.5036 4.1118 -2.0800 17 6 0.1976 5.5611 -1.7076 18 6 1.4729 6.3402 -1.5192 19 6 1.3941 7.7265 -1.5503 20 6 2.5262 8.4979 -1.3716 21 9 2.4404 9.8458 -1.4028 22 6 3.7492 7.8836 -1.1602 23 6 3.8277 6.5072 -1.1327 24 6 2.6901 5.7305 -1.3140 25 6 2.8518 4.2331 -1.2845 26 1 -0.3633 -1.0270 -0.0341 27 1 -0.3634 0.4840 0.9066 28 1 -0.3633 0.5431 -0.8724 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8887 0.4785 2.0902 32 1 0.7943 1.7008 -1.6186 33 1 0.9371 4.0732 -3.0793 34 1 -0.4143 3.5246 -2.0546 35 1 -0.3759 5.5807 -0.7809 36 1 -0.3898 6.0202 -2.5028 37 1 0.4402 8.2052 -1.7152 38 1 4.6382 8.4802 -1.0180 39 1 4.7818 6.0287 -0.9674 40 1 3.2713 3.8982 -2.2332 41 1 3.5302 3.9607 -0.4760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168412195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -32.360481 kcal Electronic energy + Delta-G solvation = -21701.357554 eV Core-core repulsion = 18494.708746 eV Total energy + Delta-G solvation = -3206.648808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79802 -39.85300 -37.20820 -34.96665 -32.52807 -32.07113 -30.95306 -29.40613 -27.73270 -26.60318 -23.46271 -22.67748 -22.23600 -21.72604 -19.80312 -19.24234 -17.06747 -16.75363 -16.36359 -15.83614 -15.48286 -14.97193 -14.62876 -14.38122 -14.13709 -13.73069 -13.41328 -13.24306 -13.04304 -12.78181 -12.68314 -12.49917 -12.06059 -11.96874 -11.75616 -11.22450 -11.19009 -11.05753 -10.86195 -10.74465 -10.42699 -10.26601 -10.00344 -9.86806 -9.41441 -9.13830 -8.78290 -8.52628 -8.22060 -7.43265 -6.05061 -4.01291 1.31523 1.32101 3.24402 3.35110 3.37219 3.69130 4.31608 4.39772 4.70352 4.72340 4.93325 5.07532 5.21009 5.23988 5.28099 5.34808 5.45666 5.68480 5.70550 5.79188 5.79301 5.87168 5.91283 5.94748 6.05429 6.07816 6.24722 6.28441 6.31935 6.42768 6.47367 6.59948 6.63405 6.65442 6.75612 6.82615 6.96352 7.12870 7.18596 7.71861 7.97080 8.25173 8.74735 9.06856 9.58594 11.07879 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.004977 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.222233 B = 5624.413551 C = 6502.079063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.188 3.812 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.085 0.915 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.100 3.900 15 H 0.040 0.960 16 C -0.123 4.123 17 C -0.076 4.076 18 C -0.056 4.056 19 C -0.157 4.157 20 C 0.081 3.919 21 F -0.147 7.147 22 C -0.156 4.156 23 C -0.089 4.089 24 C -0.066 4.066 25 C -0.073 4.073 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.322 0.678 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.084 0.916 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 9.694 -5.591 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.080 3.920 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.103 0.897 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.303 5.303 14 C -0.010 4.010 15 H 0.058 0.942 16 C -0.161 4.161 17 C -0.114 4.114 18 C -0.056 4.056 19 C -0.176 4.176 20 C 0.062 3.938 21 F -0.126 7.126 22 C -0.175 4.175 23 C -0.107 4.107 24 C -0.067 4.067 25 C -0.110 4.110 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.102 0.898 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.958 9.724 -5.712 14.403 hybrid contribution -1.226 -0.155 1.417 1.880 sum -10.183 9.569 -4.295 14.619 Atomic orbital electron populations 1.21911 0.98254 1.00525 1.00707 1.22146 0.92920 1.00616 1.01812 1.19731 0.96991 0.89178 0.86136 0.98063 1.21068 0.88918 1.36998 1.06154 0.89718 1.24953 0.94692 0.96038 0.97750 1.69878 1.08336 1.45817 1.29918 0.86991 0.80625 0.79835 0.81528 1.20673 1.22584 1.19421 1.60512 1.37058 1.01258 1.31485 1.21338 0.94041 0.89216 0.96395 0.94167 1.21814 0.99213 0.94603 1.00484 1.20445 0.93946 0.95085 1.01880 1.19477 0.95201 0.92212 0.98712 1.21047 0.97628 0.93814 1.05098 1.17547 0.95026 0.76579 1.04663 1.91461 1.97129 1.29705 1.94331 1.21046 0.96492 0.95686 1.04229 1.21170 0.99209 0.92364 0.98006 1.20081 0.91962 0.97346 0.97313 1.20632 0.98942 0.86941 1.04503 0.93613 0.93683 0.93142 0.91327 0.92869 0.92775 0.85942 0.90952 0.91796 0.90583 0.90778 0.85402 0.85107 0.84676 0.89814 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.78 37.16 0.36 -2.19 16 2 C -0.14 -2.81 5.01 -26.73 -0.13 -2.94 16 3 C 0.19 4.17 1.63 -68.86 -0.11 4.05 16 4 H 0.00 0.04 6.42 -51.93 -0.33 -0.29 16 5 C -0.49 -13.08 8.09 -34.44 -0.28 -13.36 16 6 H 0.08 2.45 7.29 -52.49 -0.38 2.07 16 7 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 8 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.88 21.43 24.41 -169.99 -4.15 17.28 16 10 H -0.28 -6.67 6.83 56.52 0.39 -6.28 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.67 -12.56 6.17 -100.92 -0.62 -13.19 16 14 C 0.10 1.68 2.52 -67.69 -0.17 1.51 16 15 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 16 C -0.12 -1.60 5.34 -26.71 -0.14 -1.74 16 17 C -0.08 -0.89 5.67 -28.05 -0.16 -1.05 16 18 C -0.06 -0.76 5.74 -104.62 -0.60 -1.36 16 19 C -0.16 -2.03 9.59 -39.37 -0.38 -2.41 16 20 C 0.08 1.11 7.30 -39.52 -0.29 0.82 16 21 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 22 C -0.16 -2.08 10.03 -39.62 -0.40 -2.48 16 23 C -0.09 -1.29 9.60 -39.45 -0.38 -1.67 16 24 C -0.07 -1.01 5.74 -104.60 -0.60 -1.61 16 25 C -0.07 -1.26 4.59 -28.05 -0.13 -1.39 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.05 1.19 3.22 -51.93 -0.17 1.02 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.32 5.29 5.90 -39.29 -0.23 5.06 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.13 1.38 8.05 -52.49 -0.42 0.96 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.14 1.85 8.05 -52.49 -0.42 1.43 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.10 2.06 6.69 -51.93 -0.35 1.71 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -28.71 318.89 -8.65 -37.36 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.99 Total: 5.80 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.50 Total: -24.06 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.15 Total: -39.20 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.15 Total: 17.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.71 -8.65 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168412195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.000 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds