Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 H 1.08999 * 109.47474 * 55.33702 * 3 2 1 5 5 C 1.50708 * 109.46750 * 175.33662 * 3 2 1 6 6 H 1.07997 * 119.99953 * 120.00373 * 5 3 2 7 7 C 1.37873 * 119.99779 * 299.99606 * 5 3 2 8 8 N 1.31517 * 119.99779 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00264 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47283 * 90.00118 * 9 7 5 11 11 H 1.48504 * 109.47279 * 209.99687 * 9 7 5 12 12 H 1.48501 * 109.47553 * 329.99871 * 9 7 5 13 13 N 1.46901 * 109.47164 * 295.33252 * 3 2 1 14 14 C 1.46904 * 110.99798 * 152.25726 * 13 3 2 15 15 H 1.08993 * 109.67537 * 327.29510 * 14 13 3 16 16 C 1.53314 * 109.70874 * 206.76149 * 14 13 3 17 17 C 1.52728 * 108.39046 * 170.43235 * 16 14 13 18 18 C 1.50634 * 110.58941 * 51.16231 * 17 16 14 19 19 C 1.38884 * 117.73772 * 162.30999 * 18 17 16 20 20 C 1.38159 * 120.52184 * 179.40335 * 19 18 17 21 21 F 1.35103 * 120.13444 * 180.02562 * 20 19 18 22 22 C 1.38482 * 119.71988 * 0.02562 * 20 19 18 23 23 C 1.37888 * 119.74574 * 0.13241 * 22 20 19 24 24 C 1.37678 * 122.55300 * 341.97137 * 18 17 16 25 25 C 1.50638 * 122.54922 * 1.07875 * 24 18 17 26 26 H 1.08994 * 109.47086 * 178.09682 * 1 2 3 27 27 H 1.09001 * 109.47273 * 298.09527 * 1 2 3 28 28 H 1.08997 * 109.47040 * 58.09310 * 1 2 3 29 29 H 1.08992 * 109.47185 * 239.99961 * 2 1 3 30 30 H 1.09001 * 109.47244 * 119.99970 * 2 1 3 31 31 H 0.97006 * 120.00252 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99559 * 28.31103 * 13 3 2 33 33 H 1.08998 * 109.68193 * 290.15938 * 16 14 13 34 34 H 1.08999 * 109.68182 * 50.70726 * 16 14 13 35 35 H 1.09003 * 109.25388 * 290.87261 * 17 16 14 36 36 H 1.09001 * 109.25649 * 171.44566 * 17 16 14 37 37 H 1.07993 * 119.73891 * 359.42038 * 19 18 17 38 38 H 1.08000 * 120.12776 * 180.10614 * 22 20 19 39 39 H 1.08002 * 119.71100 * 180.02562 * 23 22 20 40 40 H 1.08999 * 109.25129 * 102.27957 * 25 24 18 41 41 H 1.09001 * 109.25170 * 221.71200 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6100 1.9800 0.8452 5 6 3.5426 1.4441 0.1155 6 1 4.1436 1.8902 -0.6630 7 6 4.1500 0.8761 1.2152 8 7 5.4613 0.8778 1.3163 9 14 3.1105 0.1040 2.5616 10 1 2.8880 -1.3316 2.2534 11 1 3.8150 0.2273 3.8631 12 1 1.8022 0.8023 2.6388 13 7 1.6445 2.1017 -1.2518 14 6 1.5033 3.5516 -1.0615 15 1 1.1513 3.7564 -0.0506 16 6 0.5036 4.1118 -2.0800 17 6 0.1976 5.5611 -1.7076 18 6 1.4729 6.3402 -1.5192 19 6 1.3941 7.7265 -1.5503 20 6 2.5262 8.4979 -1.3716 21 9 2.4404 9.8458 -1.4028 22 6 3.7492 7.8836 -1.1602 23 6 3.8277 6.5072 -1.1327 24 6 2.6901 5.7305 -1.3140 25 6 2.8518 4.2331 -1.2845 26 1 -0.3633 -1.0270 -0.0341 27 1 -0.3634 0.4840 0.9066 28 1 -0.3633 0.5431 -0.8724 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8887 0.4785 2.0902 32 1 0.7943 1.7008 -1.6186 33 1 0.9371 4.0732 -3.0793 34 1 -0.4143 3.5246 -2.0546 35 1 -0.3759 5.5807 -0.7809 36 1 -0.3898 6.0202 -2.5028 37 1 0.4402 8.2052 -1.7152 38 1 4.6382 8.4802 -1.0180 39 1 4.7818 6.0287 -0.9674 40 1 3.2713 3.8982 -2.2332 41 1 3.5302 3.9607 -0.4760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168412195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = -49.195739 kcal Electronic energy + Delta-G solvation = -21702.087586 eV Core-core repulsion = 18494.708746 eV Total energy + Delta-G solvation = -3207.378839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87510 -41.00465 -38.67506 -36.32878 -34.19514 -33.61840 -32.26752 -30.56505 -29.22493 -28.20373 -24.67347 -24.26969 -23.35270 -22.97914 -21.54016 -20.46776 -18.73959 -18.13656 -17.54137 -17.17986 -16.62790 -16.52169 -16.02785 -15.79902 -15.52971 -15.05768 -14.70842 -14.56093 -14.39605 -14.14011 -13.98114 -13.90267 -13.55330 -13.28845 -13.04039 -12.86553 -12.56827 -12.34020 -12.17462 -12.11259 -12.03496 -11.84802 -11.41989 -11.35047 -11.12434 -11.03719 -10.60076 -9.83238 -9.38273 -9.02011 -8.21963 -6.21112 0.18771 0.25544 1.28991 1.34446 1.43331 2.34249 2.58473 3.10865 3.24155 3.39288 3.65975 3.87063 3.97294 4.15442 4.19462 4.20546 4.25315 4.33097 4.39949 4.47256 4.59937 4.62170 4.71891 4.85645 4.87560 4.99229 5.04150 5.05316 5.08394 5.12419 5.16794 5.18934 5.25157 5.33772 5.41178 5.44218 5.54813 5.72632 5.77594 5.97970 6.17379 6.58718 6.86511 7.03732 7.42591 8.94712 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.004977 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.222233 B = 5624.413551 C = 6502.079063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.194 3.806 4 H -0.008 1.008 5 C -0.486 4.486 6 H 0.043 0.957 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.305 1.305 12 H -0.251 1.251 13 N -0.677 5.677 14 C 0.099 3.901 15 H 0.027 0.973 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.055 4.055 19 C -0.151 4.151 20 C 0.076 3.924 21 F -0.146 7.146 22 C -0.157 4.157 23 C -0.103 4.103 24 C -0.087 4.087 25 C -0.062 4.062 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.340 0.660 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 10.382 -6.150 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.085 3.915 4 H 0.009 0.991 5 C -0.525 4.525 6 H 0.061 0.939 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.233 1.233 12 H -0.175 1.175 13 N -0.310 5.310 14 C -0.011 4.011 15 H 0.045 0.955 16 C -0.151 4.151 17 C -0.111 4.111 18 C -0.055 4.055 19 C -0.169 4.169 20 C 0.057 3.943 21 F -0.125 7.125 22 C -0.176 4.176 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.099 4.099 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.176 0.824 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.086 0.914 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.834 10.415 -6.296 17.687 hybrid contribution 0.054 -0.268 1.494 1.519 sum -12.780 10.147 -4.801 17.010 Atomic orbital electron populations 1.21839 0.94328 1.02513 1.01898 1.22037 0.96425 0.98376 1.00743 1.19488 0.93792 0.90923 0.87312 0.99082 1.21353 0.91513 1.35020 1.04592 0.93851 1.25737 0.95646 0.97095 1.00394 1.70043 1.10376 1.47988 1.30948 0.85982 0.79504 0.79612 0.78010 1.19409 1.23325 1.17534 1.60305 1.38392 1.02527 1.29812 1.21384 0.94577 0.87946 0.97217 0.95457 1.21745 0.98762 0.95753 0.98819 1.20532 0.93103 0.93777 1.03638 1.19716 0.95205 0.92918 0.97687 1.21309 0.98574 0.93287 1.03744 1.17709 0.95376 0.76730 1.04502 1.91467 1.97128 1.29606 1.94302 1.21189 0.97513 0.95136 1.03726 1.21198 0.98997 0.93143 0.98818 1.19975 0.93427 0.95876 0.99520 1.20365 0.98662 0.89141 1.01762 0.91368 0.93495 0.90877 0.91804 0.94610 0.92988 0.83935 0.90952 0.89284 0.89380 0.87498 0.82446 0.83432 0.85464 0.91375 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.78 71.98 0.70 -3.57 16 2 C -0.14 -5.42 5.01 30.60 0.15 -5.27 16 3 C 0.19 8.59 1.63 44.17 0.07 8.67 16 4 H -0.01 -0.38 6.42 -2.39 -0.02 -0.40 16 5 C -0.49 -27.00 8.09 25.60 0.21 -26.80 16 6 H 0.04 2.71 7.29 -2.91 -0.02 2.68 16 7 C 0.01 0.43 5.45 84.65 0.46 0.89 16 8 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.94 44.97 24.41 68.60 1.67 46.64 16 10 H -0.27 -12.20 6.83 99.48 0.68 -11.52 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 13 N -0.68 -24.97 6.17 -473.21 -2.92 -27.89 16 14 C 0.10 3.26 2.52 44.93 0.11 3.37 16 15 H 0.03 0.98 7.32 -2.39 -0.02 0.96 16 16 C -0.11 -2.59 5.34 30.61 0.16 -2.42 16 17 C -0.07 -1.43 5.67 29.74 0.17 -1.26 16 18 C -0.06 -1.39 5.74 -19.86 -0.11 -1.50 16 19 C -0.15 -3.45 9.59 22.41 0.21 -3.23 16 20 C 0.08 1.93 7.30 22.31 0.16 2.09 16 21 F -0.15 -3.69 17.27 44.97 0.78 -2.91 16 22 C -0.16 -4.12 10.03 22.24 0.22 -3.89 16 23 C -0.10 -3.10 9.60 22.35 0.21 -2.88 16 24 C -0.09 -2.70 5.74 -19.85 -0.11 -2.82 16 25 C -0.06 -2.26 4.59 29.74 0.14 -2.12 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.76 6.37 -2.39 -0.02 1.74 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.04 1.53 3.22 -2.39 -0.01 1.52 16 31 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 32 H 0.34 10.30 5.90 -89.69 -0.53 9.78 16 33 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.16 2.67 8.05 -2.91 -0.02 2.64 16 38 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.13 3.86 8.05 -2.91 -0.02 3.84 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 2.37 6.69 -2.39 -0.02 2.36 16 Total: -1.00 -65.84 318.89 3.02 -62.82 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.42 Total: 21.39 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 2.77 Total: -40.76 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.62 Total: -87.18 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Total: -65.84 3.02 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168412195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.625 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds