Wall clock time and date at job start Mon Mar 30 2020 02:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09002 * 109.46897 * 56.92612 * 3 2 1 5 5 C 1.53004 * 109.47037 * 296.92783 * 3 2 1 6 6 C 1.53000 * 109.47402 * 176.92869 * 3 2 1 7 7 H 1.08993 * 109.47336 * 175.13872 * 6 3 2 8 8 N 1.46499 * 109.47289 * 55.13438 * 6 3 2 9 9 C 1.32212 * 119.99790 * 116.19050 * 8 6 3 10 10 C 1.46913 * 120.83107 * 353.86769 * 9 8 6 11 11 C 1.34380 * 119.36593 * 179.72665 * 10 9 8 12 12 N 1.36430 * 121.22445 * 0.02562 * 11 10 9 13 13 H 0.96996 * 119.09472 * 179.97438 * 12 11 10 14 14 C 1.37772 * 121.81702 * 359.97438 * 12 11 10 15 15 C 1.40172 * 119.74504 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00433 * 153.93023 * 15 14 12 17 17 C 1.40360 * 119.99998 * 333.93313 * 15 14 12 18 18 N 1.30587 * 119.99673 * 347.82772 * 17 15 14 19 19 Si 1.86799 * 120.00105 * 167.82049 * 17 15 14 20 20 H 1.48502 * 109.46686 * 60.00323 * 19 17 15 21 21 H 1.48493 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47298 * 300.00588 * 19 17 15 23 23 C 1.39069 * 120.51191 * 359.97438 * 14 12 11 24 24 C 1.50708 * 109.47030 * 295.14028 * 6 3 2 25 25 N 1.34778 * 119.99977 * 277.32098 * 24 6 3 26 26 O 1.21276 * 120.00095 * 97.31408 * 24 6 3 27 27 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47360 * 299.99926 * 1 2 3 29 29 H 1.09000 * 109.47301 * 60.00145 * 1 2 3 30 30 H 1.08999 * 109.47360 * 240.00074 * 2 1 3 31 31 H 1.09000 * 109.47301 * 119.99855 * 2 1 3 32 32 H 1.08993 * 109.47050 * 299.99907 * 5 3 2 33 33 H 1.09001 * 109.47007 * 60.00006 * 5 3 2 34 34 H 1.09002 * 109.46887 * 179.97438 * 5 3 2 35 35 H 1.07997 * 120.32236 * 359.74299 * 10 9 8 36 36 H 1.08002 * 119.38887 * 179.97438 * 11 10 9 37 37 H 0.97004 * 119.99755 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.62845 * 180.02562 * 23 14 12 39 39 H 0.97003 * 119.99397 * 4.88945 * 25 24 6 40 40 H 0.96993 * 120.00074 * 184.88972 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6323 1.9720 0.8612 5 6 1.5940 2.1411 -1.2861 6 6 3.5680 1.4433 0.0773 7 1 3.9357 2.4656 -0.0096 8 7 4.1126 0.6338 -1.0156 9 6 4.8573 1.2000 -1.9499 10 6 5.0403 2.6572 -1.9864 11 6 5.8080 3.2011 -2.9459 12 7 6.4199 2.4252 -3.8867 13 1 6.9669 2.8504 -4.5655 14 6 6.2823 1.0545 -3.8990 15 6 6.9311 0.2993 -4.8857 16 1 7.1915 -0.7311 -4.6932 17 6 7.2424 0.8821 -6.1241 18 7 6.7265 2.0365 -6.4504 19 14 8.3947 0.0064 -7.3051 20 1 7.8233 -1.3163 -7.6647 21 1 8.5594 0.8243 -8.5336 22 1 9.7165 -0.1852 -6.6563 23 6 5.5056 0.4141 -2.9395 24 6 4.0044 0.8629 1.3979 25 7 4.0329 1.6398 2.4989 26 8 4.3300 -0.3031 1.4699 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0016 1.6116 -2.1472 33 1 0.5054 2.1406 -1.3412 34 1 1.9570 3.1689 -1.2859 35 1 4.5627 3.2854 -1.2491 36 1 5.9424 4.2724 -2.9734 37 1 6.9414 2.4391 -7.3064 38 1 5.3967 -0.6603 -2.9472 39 1 3.7056 2.5520 2.4574 40 1 4.3805 1.2867 3.3327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169157248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:49 Heat of formation + Delta-G solvation = -38.271862 kcal Electronic energy + Delta-G solvation = -21672.912138 eV Core-core repulsion = 18485.926955 eV Total energy + Delta-G solvation = -3186.985183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75167 -40.09833 -37.69210 -35.96442 -34.78406 -34.46684 -32.38266 -31.39331 -29.79820 -28.32056 -27.15774 -24.63891 -23.24965 -22.56773 -21.74956 -20.30149 -19.63698 -18.39293 -18.23412 -17.58124 -16.93660 -16.43482 -16.28013 -15.92952 -15.54886 -15.21084 -14.81618 -14.56626 -14.48892 -14.15166 -13.98738 -13.39725 -13.18668 -13.08480 -12.89270 -12.80976 -12.63834 -12.39389 -12.35147 -11.91083 -11.81378 -11.57736 -11.52766 -11.34357 -11.10841 -10.60018 -10.47782 -9.93217 -9.13107 -8.93581 -7.69525 -6.63058 0.97805 1.11025 1.41973 1.52350 1.60930 1.84832 2.16756 2.52838 2.82460 2.99330 3.55070 3.84986 4.05276 4.10699 4.18901 4.37338 4.43123 4.49473 4.67529 4.73463 4.80830 4.84394 4.96759 4.98098 5.05644 5.07684 5.20308 5.22971 5.26418 5.33197 5.54584 5.64385 5.69948 5.84645 6.00459 6.02755 6.12563 6.46269 6.54914 6.62452 7.03883 7.22634 7.54997 8.02753 8.07687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.004301 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.177232 B = 6508.608293 C = 6655.283812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.067 4.067 4 H 0.089 0.911 5 C -0.131 4.131 6 C 0.072 3.928 7 H 0.067 0.933 8 N -0.663 5.663 9 C 0.268 3.732 10 C -0.316 4.316 11 C 0.136 3.864 12 N -0.600 5.600 13 H 0.418 0.582 14 C 0.324 3.676 15 C -0.500 4.500 16 H 0.090 0.910 17 C 0.052 3.948 18 N -0.827 5.827 19 Si 0.994 3.006 20 H -0.267 1.267 21 H -0.259 1.259 22 H -0.258 1.258 23 C -0.398 4.398 24 C 0.516 3.484 25 N -0.842 5.842 26 O -0.583 6.583 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.142 0.858 36 H 0.185 0.815 37 H 0.305 0.695 38 H 0.077 0.923 39 H 0.415 0.585 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 9.823 5.255 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.086 4.086 4 H 0.107 0.893 5 C -0.188 4.188 6 C -0.044 4.044 7 H 0.085 0.915 8 N -0.390 5.390 9 C 0.105 3.895 10 C -0.345 4.345 11 C 0.007 3.993 12 N -0.211 5.211 13 H 0.259 0.741 14 C 0.215 3.785 15 C -0.532 4.532 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.455 5.455 19 Si 0.814 3.186 20 H -0.192 1.192 21 H -0.183 1.183 22 H -0.182 1.182 23 C -0.427 4.427 24 C 0.301 3.699 25 N -0.407 5.407 26 O -0.461 6.461 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.202 0.798 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.097 8.450 5.323 10.795 hybrid contribution 0.806 0.441 -0.395 1.000 sum -3.290 8.891 4.927 10.684 Atomic orbital electron populations 1.21796 0.94269 1.01624 1.02339 1.21279 0.96098 0.96489 1.00340 1.21117 0.91975 0.96349 0.99178 0.89266 1.21702 1.01175 0.99622 0.96343 1.21409 0.96496 0.95948 0.90534 0.91530 1.73451 1.25160 1.32762 1.07611 1.20408 0.87880 0.90020 0.91170 1.22355 1.11325 0.95556 1.05278 1.21988 0.91815 0.97293 0.88224 1.42110 1.44888 1.05571 1.28498 0.74078 1.17677 0.87892 0.81713 0.91247 1.19666 1.35703 1.00060 0.97815 0.89232 1.26830 0.94722 0.95456 0.99554 1.69254 1.34700 1.16973 1.24532 0.85041 0.78208 0.78817 0.76558 1.19203 1.18261 1.18164 1.20141 1.17644 0.96979 1.07930 1.21372 0.75513 0.85884 0.87087 1.43710 1.67352 1.17760 1.11926 1.90631 1.49378 1.19425 1.86627 0.93103 0.91399 0.92072 0.94475 0.94775 0.95612 0.90930 0.92009 0.84023 0.79771 0.88289 0.90497 0.75440 0.76646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.63 71.98 0.69 -3.16 16 2 C -0.10 -3.76 5.02 30.59 0.15 -3.60 16 3 C -0.07 -2.15 2.22 -10.79 -0.02 -2.17 16 4 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 5 C -0.13 -4.04 8.80 71.98 0.63 -3.41 16 6 C 0.07 2.73 2.31 44.25 0.10 2.83 16 7 H 0.07 2.28 5.28 -2.39 -0.01 2.27 16 8 N -0.66 -32.81 8.34 -318.14 -2.65 -35.46 16 9 C 0.27 13.38 6.76 42.30 0.29 13.66 16 10 C -0.32 -12.52 9.36 23.66 0.22 -12.30 16 11 C 0.14 4.88 11.15 83.10 0.93 5.80 16 12 N -0.60 -25.38 4.86 -188.18 -0.91 -26.30 16 13 H 0.42 16.65 6.41 -92.71 -0.59 16.06 16 14 C 0.32 16.37 6.34 38.88 0.25 16.62 16 15 C -0.50 -24.66 9.04 23.26 0.21 -24.45 16 16 H 0.09 4.47 7.88 -2.91 -0.02 4.45 16 17 C 0.05 2.22 5.25 85.39 0.45 2.67 16 18 N -0.83 -34.87 11.06 21.90 0.24 -34.62 16 19 Si 0.99 33.16 29.58 68.60 2.03 35.19 16 20 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 21 H -0.26 -7.88 7.11 99.48 0.71 -7.17 16 22 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 23 C -0.40 -21.80 9.83 23.41 0.23 -21.57 16 24 C 0.52 19.79 6.45 87.66 0.57 20.35 16 25 N -0.84 -20.82 8.87 -173.53 -1.54 -22.36 16 26 O -0.58 -28.89 16.91 -3.02 -0.05 -28.94 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.54 6.51 -2.39 -0.02 1.53 16 30 H 0.04 1.64 7.59 -2.39 -0.02 1.62 16 31 H 0.03 1.35 6.89 -2.39 -0.02 1.33 16 32 H 0.02 0.99 7.71 -2.39 -0.02 0.97 16 33 H 0.07 1.87 6.51 -2.39 -0.02 1.85 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.14 4.70 5.96 -2.91 -0.02 4.69 16 36 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.31 11.36 8.29 -92.71 -0.77 10.60 16 38 H 0.08 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.41 6.93 8.83 -92.71 -0.82 6.12 16 40 H 0.40 8.71 8.93 -92.71 -0.83 7.88 16 Total: -1.00 -70.27 328.57 0.65 -69.62 By element: Atomic # 1 Polarization: 52.76 SS G_CDS: -1.15 Total: 51.61 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.69 Total: -8.74 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.87 Total: -118.74 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Total: -70.27 0.65 -69.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169157248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.347 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds