Wall clock time and date at job start Mon Mar 30 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46759 * 2 1 4 4 H 1.08995 * 109.47070 * 54.36053 * 3 2 1 5 5 C 1.52995 * 109.47408 * 294.35798 * 3 2 1 6 6 C 1.52999 * 109.46784 * 174.35693 * 3 2 1 7 7 H 1.08994 * 109.47176 * 177.27066 * 6 3 2 8 8 N 1.46506 * 109.47179 * 57.27534 * 6 3 2 9 9 C 1.38820 * 120.00566 * 154.99865 * 8 6 3 10 10 C 1.39799 * 119.58032 * 0.02562 * 9 8 6 11 11 C 1.38594 * 119.49032 * 179.97438 * 10 9 8 12 12 C 1.38383 * 118.68041 * 359.97438 * 11 10 9 13 13 C 1.40556 * 119.15004 * 0.02562 * 12 11 10 14 14 C 1.41316 * 119.78409 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00213 * 353.89038 * 14 13 12 16 16 C 1.40033 * 119.99703 * 173.88250 * 14 13 12 17 17 N 1.30741 * 119.99961 * 6.08153 * 16 14 13 18 18 Si 1.86799 * 119.99544 * 186.07523 * 16 14 13 19 19 H 1.48503 * 109.46958 * 94.99112 * 18 16 14 20 20 H 1.48500 * 109.47183 * 214.98704 * 18 16 14 21 21 H 1.48497 * 109.47615 * 334.99168 * 18 16 14 22 22 N 1.31950 * 119.58561 * 180.02562 * 9 8 6 23 23 C 1.50697 * 109.47438 * 297.27575 * 6 3 2 24 24 N 1.34779 * 119.99793 * 282.47505 * 23 6 3 25 25 O 1.21283 * 120.00472 * 102.47621 * 23 6 3 26 26 H 1.09000 * 109.46667 * 299.99456 * 1 2 3 27 27 H 1.08997 * 109.47117 * 59.99564 * 1 2 3 28 28 H 1.09004 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46667 * 240.00544 * 2 1 3 30 30 H 1.08997 * 109.47117 * 120.00436 * 2 1 3 31 31 H 1.09002 * 109.47326 * 300.00563 * 5 3 2 32 32 H 1.09008 * 109.47234 * 60.00151 * 5 3 2 33 33 H 1.08997 * 109.47015 * 180.02562 * 5 3 2 34 34 H 0.97010 * 119.99712 * 334.99320 * 8 6 3 35 35 H 1.08003 * 120.25482 * 0.25185 * 10 9 8 36 36 H 1.07998 * 120.65843 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.42925 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99781 * 179.97438 * 17 16 14 39 39 H 0.97003 * 119.99755 * 5.13499 * 24 23 6 40 40 H 0.96993 * 120.00223 * 185.14191 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5965 1.9847 0.8351 5 6 1.6491 2.1217 -1.3140 6 6 3.5634 1.4449 0.1418 7 1 3.9312 2.4697 0.0932 8 7 4.1563 0.6612 -0.9448 9 6 5.4580 0.9159 -1.3542 10 6 6.1956 1.9219 -0.7231 11 6 7.4953 2.1743 -1.1330 12 6 8.0263 1.4161 -2.1617 13 6 7.2343 0.4188 -2.7565 14 6 7.7629 -0.3629 -3.8084 15 1 8.7339 -0.1295 -4.2194 16 6 7.0276 -1.4403 -4.3178 17 7 5.8053 -1.6512 -3.9043 18 14 7.7931 -2.5760 -5.5881 19 1 8.3797 -3.7575 -4.9061 20 1 6.7491 -3.0242 -6.5444 21 1 8.8589 -1.8492 -6.3235 22 7 5.9836 0.2055 -2.3341 23 6 3.9456 0.8363 1.4664 24 7 3.8259 1.5573 2.5989 25 8 4.3608 -0.3022 1.5135 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0925 1.5796 -2.1492 32 1 0.5637 2.1201 -1.4151 33 1 2.0128 3.1492 -1.3141 34 1 3.6391 -0.0357 -1.3782 35 1 5.7576 2.4951 0.0807 36 1 8.0823 2.9466 -0.6584 37 1 9.0360 1.5891 -2.5039 38 1 5.2958 -2.3973 -4.2575 39 1 3.4246 2.4400 2.5717 40 1 4.1411 1.1936 3.4410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169159881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:45 Heat of formation + Delta-G solvation = -36.422106 kcal Electronic energy + Delta-G solvation = -22032.758185 eV Core-core repulsion = 18845.853213 eV Total energy + Delta-G solvation = -3186.904972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23596 -39.78501 -37.92896 -35.78646 -34.67190 -34.53318 -32.34101 -31.39344 -30.02475 -27.91567 -27.28713 -24.86466 -23.29507 -22.75766 -21.99977 -20.40427 -19.25570 -18.32234 -18.26179 -17.72007 -16.68741 -16.52544 -16.24845 -15.74151 -15.50625 -15.24489 -15.07827 -14.67558 -14.37571 -14.21440 -13.90270 -13.58100 -13.22475 -12.94178 -12.84077 -12.73323 -12.59207 -12.57312 -12.22033 -11.81558 -11.73676 -11.68779 -11.51726 -11.43918 -11.04932 -10.60583 -10.48912 -9.83704 -9.43364 -8.31827 -8.23214 -6.47767 1.05247 1.34665 1.39954 1.54500 1.56548 1.68750 2.24534 2.43678 2.79519 2.94883 3.69089 3.78132 3.94593 4.07015 4.18444 4.32710 4.42487 4.56467 4.61507 4.66272 4.74813 4.77843 4.95392 5.00064 5.02214 5.09466 5.14852 5.18835 5.20721 5.34583 5.47278 5.51272 5.70409 5.94102 5.96043 6.05003 6.22047 6.44648 6.61892 6.81431 6.92654 7.19858 7.44411 8.35157 8.51768 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018313 B = 0.005541 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.619731 B = 5052.248350 C = 5855.940383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.078 4.078 4 H 0.122 0.878 5 C -0.142 4.142 6 C 0.147 3.853 7 H 0.114 0.886 8 N -0.705 5.705 9 C 0.400 3.600 10 C -0.367 4.367 11 C -0.029 4.029 12 C -0.345 4.345 13 C 0.259 3.741 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.025 3.975 17 N -0.752 5.752 18 Si 0.987 3.013 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.253 1.253 22 N -0.565 5.565 23 C 0.498 3.502 24 N -0.835 5.835 25 O -0.585 6.585 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.393 0.607 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.275 0.725 39 H 0.418 0.582 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 8.192 8.800 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.097 4.097 4 H 0.140 0.860 5 C -0.199 4.199 6 C 0.036 3.964 7 H 0.131 0.869 8 N -0.339 5.339 9 C 0.159 3.841 10 C -0.393 4.393 11 C -0.054 4.054 12 C -0.368 4.368 13 C 0.132 3.868 14 C -0.504 4.504 15 H 0.105 0.895 16 C -0.197 4.197 17 N -0.374 5.374 18 Si 0.807 3.193 19 H -0.193 1.193 20 H -0.191 1.191 21 H -0.177 1.177 22 N -0.288 5.288 23 C 0.281 3.719 24 N -0.401 5.401 25 O -0.464 6.464 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.250 0.750 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.991 6.849 8.346 16.136 hybrid contribution 0.982 -0.185 0.126 1.007 sum -11.009 6.664 8.472 15.408 Atomic orbital electron populations 1.21756 0.93254 1.01988 1.02994 1.21570 0.97871 0.96047 1.00792 1.21406 0.89552 0.97310 1.01451 0.86037 1.21822 1.02351 1.00411 0.95360 1.21065 0.95912 0.96040 0.83338 0.86857 1.43976 1.11246 1.41098 1.37560 1.18946 0.86110 0.89374 0.89677 1.20905 0.98078 1.09174 1.11116 1.20995 0.94285 0.96204 0.93867 1.21691 1.01494 1.06730 1.06844 1.18697 0.87118 0.89707 0.91306 1.19936 1.03840 1.11391 1.15268 0.89511 1.26989 0.94748 0.99217 0.98752 1.70266 1.09080 1.24073 1.33961 0.85143 0.78975 0.77786 0.77405 1.19330 1.19121 1.17661 1.68150 1.14033 1.29868 1.16725 1.21849 0.76244 0.85812 0.87989 1.43670 1.64855 1.22173 1.09372 1.90740 1.47230 1.20714 1.87702 0.90965 0.91462 0.93106 0.94076 0.93628 0.94770 0.89928 0.91458 0.77163 0.86443 0.85174 0.87949 0.91465 0.74997 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.68 71.98 0.70 -1.90 16 2 C -0.12 -3.14 4.95 30.60 0.15 -2.99 16 3 C -0.08 -1.67 2.20 -10.79 -0.02 -1.70 16 4 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.14 -3.01 8.83 71.98 0.64 -2.37 16 6 C 0.15 4.33 1.79 44.24 0.08 4.41 16 7 H 0.11 2.99 6.44 -2.39 -0.02 2.97 16 8 N -0.70 -29.48 4.07 -328.02 -1.34 -30.82 16 9 C 0.40 20.44 7.62 133.42 1.02 21.46 16 10 C -0.37 -16.95 9.17 22.73 0.21 -16.75 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 12 C -0.34 -18.31 9.83 22.87 0.22 -18.09 16 13 C 0.26 15.44 6.54 40.18 0.26 15.70 16 14 C -0.47 -27.36 9.13 23.46 0.21 -27.15 16 15 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 16 C 0.02 1.33 5.49 85.29 0.47 1.80 16 17 N -0.75 -42.85 11.48 21.84 0.25 -42.60 16 18 Si 0.99 40.52 29.56 68.60 2.03 42.54 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 N -0.57 -33.54 7.91 -186.59 -1.48 -35.01 16 23 C 0.50 15.53 6.07 87.66 0.53 16.06 16 24 N -0.84 -15.74 8.87 -173.53 -1.54 -17.28 16 25 O -0.59 -25.68 17.04 -3.04 -0.05 -25.73 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.10 6.59 -2.39 -0.02 1.09 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 1.27 6.61 -2.39 -0.02 1.25 16 30 H 0.04 1.33 6.88 -2.39 -0.02 1.31 16 31 H 0.03 0.96 7.63 -2.39 -0.02 0.94 16 32 H 0.08 1.35 6.59 -2.38 -0.02 1.33 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.39 17.51 6.86 -92.70 -0.64 16.88 16 35 H 0.12 4.51 6.14 -2.91 -0.02 4.50 16 36 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.27 14.22 8.29 -92.71 -0.77 13.45 16 39 H 0.42 4.29 8.83 -92.71 -0.82 3.47 16 40 H 0.40 6.97 8.93 -92.71 -0.83 6.14 16 Total: -1.00 -79.07 328.06 1.37 -77.70 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -1.19 Total: 43.85 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.69 Total: -12.65 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -4.10 Total: -125.71 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -79.07 1.37 -77.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169159881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.274 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds