Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.09003 * 109.47003 * 303.88863 * 3 2 1 5 5 C 1.50695 * 109.47337 * 183.88501 * 3 2 1 6 6 H 1.07999 * 120.00137 * 245.76694 * 5 3 2 7 7 C 1.37881 * 120.00025 * 65.75805 * 5 3 2 8 8 N 1.31512 * 120.00035 * 195.23039 * 7 5 3 9 9 Si 1.86798 * 119.99622 * 15.23440 * 7 5 3 10 10 H 1.48497 * 109.47291 * 86.95923 * 9 7 5 11 11 H 1.48505 * 109.47182 * 206.95734 * 9 7 5 12 12 H 1.48493 * 109.47392 * 326.95614 * 9 7 5 13 13 N 1.46902 * 109.47187 * 63.88503 * 3 2 1 14 14 C 1.46901 * 110.99939 * 258.79796 * 13 3 2 15 15 H 1.08996 * 109.68027 * 35.49996 * 14 13 3 16 16 C 1.53326 * 109.68003 * 156.05622 * 14 13 3 17 17 C 1.52733 * 108.38287 * 189.57820 * 16 14 13 18 18 C 1.50639 * 110.58575 * 308.88079 * 17 16 14 19 19 C 1.38926 * 117.73535 * 197.43536 * 18 17 16 20 20 C 1.37940 * 120.59841 * 180.60229 * 19 18 17 21 21 C 1.38227 * 119.79858 * 359.95378 * 20 19 18 22 22 C 1.38153 * 119.74186 * 359.88984 * 21 20 19 23 23 F 1.35101 * 119.75509 * 180.02562 * 22 21 20 24 24 C 1.37620 * 122.55928 * 17.80049 * 18 17 16 25 25 C 1.50619 * 122.57628 * 359.26421 * 24 18 17 26 26 H 1.08996 * 109.46866 * 174.69654 * 1 2 3 27 27 H 1.09006 * 109.46730 * 294.68947 * 1 2 3 28 28 H 1.08992 * 109.47181 * 54.68806 * 1 2 3 29 29 H 1.08993 * 109.47050 * 120.00537 * 2 1 3 30 30 H 1.08998 * 109.46559 * 240.00130 * 2 1 3 31 31 H 0.97003 * 119.99726 * 180.02562 * 8 7 5 32 32 H 1.00910 * 110.99428 * 22.74853 * 13 3 2 33 33 H 1.09006 * 109.68373 * 309.29779 * 16 14 13 34 34 H 1.08995 * 109.68665 * 69.85624 * 16 14 13 35 35 H 1.09000 * 109.24703 * 188.60136 * 17 16 14 36 36 H 1.08995 * 109.22395 * 69.15074 * 17 16 14 37 37 H 1.08000 * 119.70518 * 0.60210 * 19 18 17 38 38 H 1.08005 * 120.10347 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.12768 * 179.91597 * 21 20 19 40 40 H 1.09001 * 109.25915 * 257.47915 * 25 24 18 41 41 H 1.09002 * 109.25523 * 138.05438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6210 1.9760 -0.8531 5 6 3.5440 1.4436 -0.0963 6 1 4.1376 1.8085 0.7288 7 6 4.1621 0.9785 -1.2377 8 7 5.4464 0.6961 -1.2214 9 14 3.1751 0.7497 -2.8070 10 1 3.1462 2.0267 -3.5643 11 1 3.8068 -0.3053 -3.6397 12 1 1.7878 0.3456 -2.4649 13 7 1.6286 2.1074 1.2436 14 6 0.4628 2.9721 1.0173 15 1 -0.1949 2.5155 0.2778 16 6 -0.2975 3.1689 2.3342 17 6 -1.6219 3.8645 2.0264 18 6 -1.3914 5.0971 1.1917 19 6 -2.4122 6.0376 1.1318 20 6 -2.2689 7.1821 0.3752 21 6 -1.0996 7.3976 -0.3297 22 6 -0.0813 6.4658 -0.2695 23 9 1.0618 6.6765 -0.9580 24 6 -0.2247 5.3116 0.4941 25 6 0.9257 4.3398 0.5195 26 1 -0.3633 -1.0232 -0.0950 27 1 -0.3633 0.4293 0.9338 28 1 -0.3633 0.5940 -0.8385 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8813 0.3693 -2.0246 32 1 1.4424 1.4322 1.9701 33 1 -0.4901 2.2001 2.7953 34 1 0.2932 3.7869 3.0104 35 1 -2.1043 4.1488 2.9616 36 1 -2.2699 3.1777 1.4820 37 1 -3.3262 5.8712 1.6825 38 1 -3.0678 7.9077 0.3340 39 1 -0.9823 8.2912 -0.9248 40 1 1.7027 4.7196 1.1829 41 1 1.3319 4.2372 -0.4868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170964117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -34.482927 kcal Electronic energy + Delta-G solvation = -22028.436068 eV Core-core repulsion = 18821.695224 eV Total energy + Delta-G solvation = -3206.740844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.73148 -39.90979 -37.41867 -35.01659 -32.33796 -31.95677 -31.05729 -29.41428 -28.08469 -26.55467 -23.56641 -22.71769 -22.02176 -21.90396 -19.83145 -19.27138 -17.24801 -16.65544 -16.23904 -16.03651 -15.52387 -15.12489 -14.71288 -14.30843 -13.98528 -13.67640 -13.55506 -13.29457 -13.01554 -12.75816 -12.58305 -12.54977 -12.01463 -11.92042 -11.67121 -11.65146 -11.35989 -11.04517 -10.86254 -10.78972 -10.57405 -10.32355 -10.08393 -9.89121 -9.40256 -9.25600 -8.68258 -8.52760 -8.34367 -7.35640 -6.02466 -3.93862 1.14800 1.21908 3.30667 3.38739 3.42085 3.54517 4.28699 4.46725 4.57732 4.60786 4.82419 4.98724 5.06709 5.18213 5.24225 5.27392 5.32361 5.57251 5.66795 5.70451 5.77858 5.83271 5.85840 5.90436 6.01509 6.04932 6.07182 6.18434 6.21532 6.34890 6.38534 6.49039 6.52083 6.60098 6.68094 6.80088 6.92049 6.95446 7.20967 7.80736 7.97540 8.37119 8.75841 9.15065 9.64531 11.11170 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.005691 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.438936 B = 4919.190140 C = 5672.146562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.193 3.807 4 H 0.023 0.977 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.667 5.667 14 C 0.090 3.910 15 H 0.043 0.957 16 C -0.122 4.122 17 C -0.077 4.077 18 C -0.052 4.052 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.160 4.160 22 C 0.096 3.904 23 F -0.135 7.135 24 C -0.095 4.095 25 C -0.072 4.072 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.752 8.831 5.093 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.192 4.192 3 C 0.084 3.916 4 H 0.040 0.960 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.683 3.317 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.180 1.180 13 N -0.297 5.297 14 C -0.021 4.021 15 H 0.060 0.940 16 C -0.159 4.159 17 C -0.115 4.115 18 C -0.053 4.053 19 C -0.152 4.152 20 C -0.120 4.120 21 C -0.179 4.179 22 C 0.077 3.923 23 F -0.114 7.114 24 C -0.096 4.096 25 C -0.109 4.109 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.108 0.892 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.075 9.271 4.887 20.035 hybrid contribution -0.904 -0.663 -1.384 1.781 sum -17.978 8.608 3.503 20.238 Atomic orbital electron populations 1.21943 0.98606 1.00150 1.00431 1.22631 0.92662 1.01753 1.02116 1.19599 0.96585 0.88034 0.87353 0.95961 1.20979 0.88902 1.40999 1.02652 0.90172 1.24887 0.94678 0.94841 0.98522 1.69964 1.10487 1.44409 1.28498 0.87353 0.81636 0.78049 0.84692 1.20574 1.21550 1.18030 1.60584 1.33308 1.25573 1.10282 1.21464 0.91542 0.93729 0.95327 0.93958 1.21770 0.95336 1.00656 0.98175 1.20484 0.98522 0.93895 0.98582 1.19526 0.92458 0.96407 0.96862 1.21171 0.98942 0.94451 1.00629 1.20824 0.96835 0.97599 0.96736 1.21035 0.93922 0.99905 1.03070 1.17802 0.83379 0.95805 0.95306 1.91515 1.47933 1.94739 1.77195 1.19920 0.97117 0.95261 0.97333 1.20456 0.94217 0.92826 1.03448 0.94016 0.93621 0.93734 0.92317 0.91981 0.92841 0.85158 0.91414 0.90834 0.90480 0.90461 0.85767 0.85406 0.85076 0.89168 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.61 37.16 0.32 -2.29 16 2 C -0.15 -3.17 4.60 -26.73 -0.12 -3.30 16 3 C 0.19 4.41 1.60 -68.87 -0.11 4.30 16 4 H 0.02 0.54 5.88 -51.93 -0.31 0.24 16 5 C -0.50 -13.89 9.26 -34.44 -0.32 -14.21 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.08 5.34 -17.82 -0.10 1.98 16 8 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 9 Si 0.86 21.34 25.85 -169.99 -4.39 16.95 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -5.96 5.50 56.52 0.31 -5.65 16 13 N -0.67 -12.98 5.87 -100.92 -0.59 -13.57 16 14 C 0.09 1.47 1.54 -67.68 -0.10 1.37 16 15 H 0.04 0.72 6.14 -51.93 -0.32 0.40 16 16 C -0.12 -1.54 5.37 -26.70 -0.14 -1.69 16 17 C -0.08 -0.84 5.67 -28.05 -0.16 -1.00 16 18 C -0.05 -0.66 5.74 -104.62 -0.60 -1.26 16 19 C -0.13 -1.40 9.61 -39.44 -0.38 -1.78 16 20 C -0.10 -1.03 10.05 -39.69 -0.40 -1.43 16 21 C -0.16 -1.92 10.02 -39.62 -0.40 -2.31 16 22 C 0.10 1.44 7.21 -39.28 -0.28 1.15 16 23 F -0.14 -2.27 16.47 2.25 0.04 -2.23 16 24 C -0.09 -1.43 5.74 -104.55 -0.60 -2.03 16 25 C -0.07 -1.25 4.81 -28.06 -0.13 -1.38 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.68 6.89 -51.93 -0.36 0.33 16 28 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 29 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 30 H 0.06 1.40 4.97 -51.93 -0.26 1.14 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.33 5.90 7.45 -39.29 -0.29 5.61 16 33 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.97 8.05 -52.49 -0.42 0.55 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.08 1.57 7.54 -51.93 -0.39 1.18 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -30.43 320.96 -9.06 -39.49 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.19 Total: 5.09 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -3.53 Total: -23.85 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.18 Total: -40.29 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.39 Total: 16.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.43 -9.06 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170964117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.011 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds