Wall clock time and date at job start Mon Mar 30 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 H 1.09007 * 109.47025 * 183.76593 * 3 2 1 5 5 C 1.50697 * 109.46983 * 303.76330 * 3 2 1 6 6 H 1.07997 * 120.00107 * 115.78157 * 5 3 2 7 7 C 1.37877 * 120.00054 * 295.77250 * 5 3 2 8 8 N 1.31515 * 120.00140 * 353.59464 * 7 5 3 9 9 Si 1.86805 * 120.00002 * 173.58677 * 7 5 3 10 10 H 1.48499 * 109.47076 * 270.00373 * 9 7 5 11 11 H 1.48501 * 109.47056 * 150.00325 * 9 7 5 12 12 H 1.48500 * 109.46727 * 30.00575 * 9 7 5 13 13 N 1.46896 * 109.47257 * 63.76723 * 3 2 1 14 14 C 1.46900 * 111.00433 * 80.97512 * 13 3 2 15 15 H 1.08996 * 109.67784 * 328.45625 * 14 13 3 16 16 C 1.53313 * 109.68122 * 207.90224 * 14 13 3 17 17 C 1.52736 * 108.38345 * 170.42657 * 16 14 13 18 18 C 1.50643 * 110.57544 * 51.15615 * 17 16 14 19 19 C 1.38922 * 117.73349 * 162.47873 * 18 17 16 20 20 C 1.37948 * 120.59382 * 179.44090 * 19 18 17 21 21 C 1.38226 * 119.79892 * 0.02562 * 20 19 18 22 22 C 1.38162 * 119.74353 * 0.13477 * 21 20 19 23 23 F 1.35102 * 119.75208 * 179.97438 * 22 21 20 24 24 C 1.37620 * 122.55842 * 342.15196 * 18 17 16 25 25 C 1.50632 * 122.58080 * 0.73784 * 24 18 17 26 26 H 1.09003 * 109.46913 * 64.83298 * 1 2 3 27 27 H 1.09003 * 109.47116 * 184.82290 * 1 2 3 28 28 H 1.08997 * 109.47390 * 304.82901 * 1 2 3 29 29 H 1.08998 * 109.47754 * 239.99708 * 2 1 3 30 30 H 1.09004 * 109.47252 * 120.00020 * 2 1 3 31 31 H 0.96998 * 119.99723 * 354.26424 * 8 7 5 32 32 H 1.00901 * 110.99807 * 317.02497 * 13 3 2 33 33 H 1.08995 * 109.68986 * 290.14774 * 16 14 13 34 34 H 1.09008 * 109.68335 * 50.70470 * 16 14 13 35 35 H 1.09004 * 109.25425 * 290.87960 * 17 16 14 36 36 H 1.08998 * 109.22602 * 171.42195 * 17 16 14 37 37 H 1.07994 * 119.70527 * 359.46034 * 19 18 17 38 38 H 1.08001 * 120.09993 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.12795 * 180.11111 * 21 20 19 40 40 H 1.08994 * 109.24966 * 221.99453 * 25 24 18 41 41 H 1.09003 * 109.24934 * 102.57069 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 -0.0675 5 6 1.4629 2.1793 -1.1812 6 1 0.7949 3.0131 -1.0237 7 6 1.7879 1.7889 -2.4630 8 7 2.6966 0.8581 -2.6565 9 14 0.9373 2.5820 -3.9248 10 1 -0.2844 1.8097 -4.2655 11 1 1.8588 2.5898 -5.0893 12 1 0.5615 3.9771 -3.5817 13 7 1.6260 2.1082 1.2423 14 6 2.5256 1.7613 2.3506 15 1 2.9085 0.7505 2.2099 16 6 1.7648 1.8457 3.6790 17 6 2.6459 1.2539 4.7772 18 6 4.0180 1.8751 4.7474 19 6 4.8142 1.7383 5.8776 20 6 6.0851 2.2740 5.9101 21 6 6.5723 2.9538 4.8096 22 6 5.7816 3.0944 3.6854 23 9 6.2575 3.7592 2.6098 24 6 4.4994 2.5554 3.6522 25 6 3.6889 2.7499 2.3975 26 1 -0.3633 0.4370 -0.9301 27 1 -0.3633 -1.0240 0.0864 28 1 -0.3634 0.5869 0.8435 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1974 0.5055 -1.9043 32 1 0.6687 1.8853 1.4703 33 1 1.5419 2.8876 3.9089 34 1 0.8368 1.2784 3.6073 35 1 2.7351 0.1781 4.6258 36 1 2.1864 1.4435 5.7472 37 1 4.4351 1.2076 6.7383 38 1 6.6971 2.1633 6.7930 39 1 7.5671 3.3737 4.8286 40 1 4.3284 2.5939 1.5288 41 1 3.2972 3.7669 2.3768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170964118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:26 Heat of formation + Delta-G solvation = -58.791078 kcal Electronic energy + Delta-G solvation = -21866.437160 eV Core-core repulsion = 18658.642236 eV Total energy + Delta-G solvation = -3207.794925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.95970 -40.99567 -38.91744 -36.66360 -34.11773 -33.13722 -32.21297 -30.45162 -29.10243 -27.36675 -25.61149 -24.47645 -23.42950 -23.05764 -21.40314 -20.46097 -18.77116 -18.28923 -17.42252 -17.20850 -16.71267 -16.28201 -16.03414 -15.65428 -15.49546 -15.06307 -14.73398 -14.64986 -14.50208 -14.28046 -13.95682 -13.81834 -13.37604 -13.17722 -12.86435 -12.81613 -12.64322 -12.48563 -12.22312 -12.09700 -11.95805 -11.84763 -11.75307 -11.50219 -11.34347 -10.60771 -10.40242 -9.67851 -9.57171 -9.07331 -8.51609 -6.21502 0.16311 0.23931 1.53424 1.61948 1.79063 2.58942 2.59225 3.24554 3.26023 3.29131 3.60039 3.73792 3.96311 4.04027 4.09142 4.21670 4.27079 4.32664 4.36968 4.42447 4.51120 4.53996 4.58623 4.74009 4.86512 4.89117 4.94453 4.99904 5.08783 5.12401 5.17626 5.21707 5.24011 5.28856 5.40430 5.45700 5.53245 5.56829 5.96293 5.99696 6.20257 6.54505 6.78014 6.81487 7.54720 8.83414 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004779 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.021183 B = 5857.089584 C = 6645.273807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 C 0.211 3.789 4 H -0.017 1.017 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.030 4.030 8 N -0.940 5.940 9 Si 1.110 2.890 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.091 3.909 15 H 0.025 0.975 16 C -0.114 4.114 17 C -0.073 4.073 18 C -0.059 4.059 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.160 4.160 22 C 0.060 3.940 23 F -0.159 7.159 24 C -0.123 4.123 25 C -0.060 4.060 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.339 0.661 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.032 0.968 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 0.026 20.985 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.183 4.183 3 C 0.102 3.898 4 H 0.001 0.999 5 C -0.613 4.613 6 H 0.064 0.936 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.043 0.957 16 C -0.152 4.152 17 C -0.110 4.110 18 C -0.059 4.059 19 C -0.141 4.141 20 C -0.107 4.107 21 C -0.179 4.179 22 C 0.041 3.959 23 F -0.138 7.138 24 C -0.125 4.125 25 C -0.098 4.098 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.168 0.832 40 H 0.051 0.949 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.886 0.602 19.153 19.255 hybrid contribution 0.581 -0.573 0.711 1.083 sum 2.467 0.029 19.864 20.017 Atomic orbital electron populations 1.21441 0.94589 1.00069 1.01477 1.22058 0.97911 0.99721 0.98653 1.19062 0.92619 0.89612 0.88515 0.99945 1.22128 1.29936 1.16962 0.92256 0.93607 1.26995 0.96658 0.95834 1.03222 1.70876 1.23490 1.28807 1.34742 0.83012 0.75392 0.75606 0.72642 1.19729 1.21618 1.20075 1.60586 1.05671 1.62464 1.02371 1.21390 0.93479 0.95009 0.91998 0.95658 1.21739 0.98442 1.02453 0.92533 1.20553 0.90032 0.99982 1.00440 1.19813 0.97644 0.96207 0.92203 1.21620 0.94143 1.00232 0.98107 1.21357 0.96015 0.95268 0.98020 1.21357 1.01033 1.02954 0.92528 1.18252 0.94063 0.98309 0.85313 1.91438 1.88500 1.78781 1.55094 1.19794 0.93734 1.01628 0.97328 1.20197 0.95906 1.00450 0.93224 0.93872 0.92910 0.92416 0.94566 0.94493 0.93522 0.83975 0.90986 0.89892 0.89493 0.86811 0.81796 0.81250 0.83221 0.94949 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 9.38 71.98 0.68 -4.06 16 2 C -0.14 -6.65 5.43 30.59 0.17 -6.49 16 3 C 0.21 10.76 1.81 44.17 0.08 10.84 16 4 H -0.02 -1.02 6.92 -2.38 -0.02 -1.04 16 5 C -0.57 -32.40 7.43 25.60 0.19 -32.21 16 6 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 7 C -0.03 -1.70 5.26 84.65 0.45 -1.26 16 8 N -0.94 -58.09 12.86 21.45 0.28 -57.82 16 9 Si 1.11 51.60 29.91 68.60 2.05 53.65 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.68 -28.76 6.05 -473.23 -2.86 -31.62 16 14 C 0.09 3.27 2.28 44.93 0.10 3.38 16 15 H 0.03 0.99 6.79 -2.39 -0.02 0.97 16 16 C -0.11 -2.89 5.33 30.61 0.16 -2.72 16 17 C -0.07 -1.42 5.67 29.74 0.17 -1.25 16 18 C -0.06 -1.38 5.74 -19.86 -0.11 -1.49 16 19 C -0.12 -2.09 9.61 22.36 0.21 -1.88 16 20 C -0.09 -1.46 10.05 22.20 0.22 -1.23 16 21 C -0.16 -3.59 10.02 22.25 0.22 -3.37 16 22 C 0.06 1.85 7.21 22.47 0.16 2.01 16 23 F -0.16 -5.78 16.47 44.97 0.74 -5.04 16 24 C -0.12 -3.87 5.74 -19.82 -0.11 -3.99 16 25 C -0.06 -2.28 4.86 29.74 0.14 -2.14 16 26 H 0.04 1.93 7.30 -2.39 -0.02 1.91 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.03 6.24 -2.39 -0.01 2.01 16 29 H 0.04 1.90 6.27 -2.39 -0.01 1.89 16 30 H 0.04 1.55 7.14 -2.38 -0.02 1.53 16 31 H 0.25 16.05 6.06 -92.71 -0.56 15.49 16 32 H 0.34 13.06 5.96 -89.69 -0.53 12.52 16 33 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.08 1.86 7.94 -2.38 -0.02 1.84 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.11 1.46 8.13 -2.39 -0.02 1.44 16 37 H 0.16 1.55 8.05 -2.91 -0.02 1.53 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.03 1.46 7.51 -2.39 -0.02 1.44 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -69.50 323.21 3.64 -65.86 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.70 Total: 20.82 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 2.73 Total: -45.86 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.59 Total: -89.44 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.74 Total: -5.04 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -69.50 3.64 -65.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170964118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.070 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds