Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 N 1.46900 * 109.47418 * 174.51171 * 3 2 1 5 5 C 1.46894 * 111.00313 * 73.39670 * 4 3 2 6 6 C 1.50700 * 109.47192 * 286.20359 * 5 4 3 7 7 H 1.08005 * 120.00063 * 357.16268 * 6 5 4 8 8 C 1.37880 * 120.00225 * 177.15650 * 6 5 4 9 9 N 1.31513 * 119.99467 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47141 * 59.99634 * 10 8 6 12 12 H 1.48501 * 109.47182 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47123 * 299.99838 * 10 8 6 14 14 C 1.46896 * 110.99875 * 197.35716 * 4 3 2 15 15 H 1.08999 * 110.73658 * 48.01512 * 14 4 3 16 16 C 1.54353 * 110.82273 * 171.42281 * 14 4 3 17 17 C 1.51374 * 105.16609 * 144.76083 * 16 14 4 18 18 C 1.38522 * 130.37405 * 162.78440 * 17 16 14 19 19 C 1.38109 * 120.27043 * 180.02562 * 18 17 16 20 20 C 1.38211 * 119.96408 * 359.71074 * 19 18 17 21 21 C 1.38334 * 119.90712 * 0.56670 * 20 19 18 22 22 F 1.35097 * 119.92302 * 179.72391 * 21 20 19 23 23 C 1.38178 * 109.76291 * 342.81009 * 17 16 14 24 24 C 1.51362 * 109.76973 * 0.02562 * 23 17 16 25 25 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47215 * 300.00112 * 1 2 3 27 27 H 1.09002 * 109.47061 * 59.99922 * 1 2 3 28 28 H 1.09004 * 109.47255 * 239.99892 * 2 1 3 29 29 H 1.09002 * 109.47061 * 120.00077 * 2 1 3 30 30 H 1.08995 * 109.47259 * 54.50463 * 3 2 1 31 31 H 1.09005 * 109.47185 * 294.50658 * 3 2 1 32 32 H 1.08993 * 109.46946 * 46.20462 * 5 4 3 33 33 H 1.09004 * 109.47082 * 166.20523 * 5 4 3 34 34 H 0.97008 * 119.99447 * 180.02562 * 9 8 6 35 35 H 1.09000 * 110.30192 * 25.84388 * 16 14 4 36 36 H 1.08995 * 110.38737 * 263.73050 * 16 14 4 37 37 H 1.08003 * 119.86023 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.01361 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.05219 * 180.27169 * 20 19 18 40 40 H 1.09002 * 110.30174 * 136.10197 * 24 23 17 41 41 H 1.09000 * 110.30773 * 258.26180 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5031 1.4446 0.1325 5 6 4.1454 1.0118 -1.1157 6 6 3.9716 -0.4761 -1.2804 7 1 3.4776 -1.0506 -0.5108 8 6 4.4431 -1.1040 -2.4138 9 7 5.0449 -0.4044 -3.3508 10 14 4.2270 -2.9481 -2.6183 11 1 2.7803 -3.2822 -2.5987 12 1 4.8167 -3.3751 -3.9126 13 1 4.9130 -3.6532 -1.5059 14 6 3.9923 2.7667 0.5454 15 1 3.4151 3.1457 1.3888 16 6 5.4959 2.7123 0.8900 17 6 6.0549 4.0433 0.4347 18 6 7.2427 4.6767 0.7616 19 6 7.5480 5.9082 0.2160 20 6 6.6690 6.5102 -0.6645 21 6 5.4794 5.8829 -0.9885 22 9 4.6175 6.4737 -1.8448 23 6 5.1720 4.6461 -0.4407 24 6 3.9585 3.7621 -0.6335 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5987 1.9839 0.8366 31 1 1.7593 1.9272 -0.9351 32 1 3.6850 1.5269 -1.9587 33 1 5.2081 1.2517 -1.0796 34 1 5.3764 -0.8462 -4.1484 35 1 5.9778 1.8958 0.3522 36 1 5.6351 2.5911 1.9642 37 1 7.9328 4.2056 1.4458 38 1 8.4754 6.3982 0.4734 39 1 6.9084 7.4712 -1.0953 40 1 3.0468 4.3586 -0.5993 41 1 4.0265 3.2276 -1.5810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171806140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -19.197780 kcal Electronic energy + Delta-G solvation = -21826.175856 eV Core-core repulsion = 18620.097825 eV Total energy + Delta-G solvation = -3206.078030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.66345 -40.01016 -37.46493 -34.56975 -32.64540 -31.68075 -30.76692 -28.18833 -27.26623 -26.81993 -24.59653 -22.69196 -21.54726 -21.26409 -20.34289 -18.95694 -17.02047 -16.66864 -16.14367 -15.57291 -15.50372 -14.90546 -14.84964 -14.30867 -14.06208 -13.67792 -13.43422 -12.81648 -12.75196 -12.62368 -12.50372 -12.02949 -11.92783 -11.87334 -11.23305 -11.12860 -11.05221 -10.98652 -10.89638 -10.80195 -10.58770 -10.45369 -10.05970 -9.98754 -9.43825 -9.03934 -8.49045 -8.41409 -8.34291 -7.29675 -6.02715 -4.01542 1.31493 1.35809 3.32522 3.37497 3.39647 3.71275 4.37815 4.41572 4.54449 4.69419 4.91341 5.12411 5.25533 5.30949 5.40066 5.49568 5.50815 5.74507 5.77228 5.80347 5.92115 6.00186 6.08667 6.12113 6.15925 6.25992 6.30226 6.33106 6.41867 6.45987 6.51753 6.55046 6.64337 6.71189 6.98908 7.05303 7.20146 7.34488 7.41415 7.82613 8.11299 8.17569 8.53214 9.03733 9.59832 11.07616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.005264 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.727497 B = 5317.699612 C = 6004.505029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.074 3.926 4 N -0.527 5.527 5 C 0.188 3.812 6 C -0.507 4.507 7 H 0.075 0.925 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.091 3.909 15 H 0.081 0.919 16 C -0.080 4.080 17 C -0.057 4.057 18 C -0.121 4.121 19 C -0.098 4.098 20 C -0.163 4.163 21 C 0.105 3.895 22 F -0.144 7.144 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.024 0.976 32 H -0.002 1.002 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 10.195 7.807 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.054 4.054 4 N -0.249 5.249 5 C 0.063 3.937 6 C -0.546 4.546 7 H 0.093 0.907 8 C -0.147 4.147 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.019 4.019 15 H 0.099 0.901 16 C -0.117 4.117 17 C -0.058 4.058 18 C -0.139 4.139 19 C -0.116 4.116 20 C -0.182 4.182 21 C 0.086 3.914 22 F -0.123 7.123 23 C -0.121 4.121 24 C -0.158 4.158 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.016 0.984 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.595 9.835 7.962 12.668 hybrid contribution -0.332 -0.099 -1.167 1.217 sum 0.263 9.736 6.796 11.876 Atomic orbital electron populations 1.21796 0.97839 1.00650 1.00432 1.21985 0.92761 0.97211 1.05008 1.21881 0.88176 0.97169 0.98187 1.62284 1.05044 1.20990 1.36603 1.19869 0.94355 0.95869 0.83627 1.21341 1.37001 0.92491 1.03723 0.90725 1.24998 0.95472 0.98159 0.96046 1.69955 1.39114 1.35742 1.08869 0.86640 0.78444 0.85607 0.77240 1.20192 1.21482 1.20189 1.22344 0.95003 0.89083 0.95468 0.90135 1.21244 0.95352 0.93528 1.01572 1.20661 0.93406 0.96272 0.95420 1.20683 0.96487 0.95321 1.01434 1.20802 0.98994 0.95212 0.96563 1.20945 0.93793 1.01573 1.01855 1.17398 0.89285 0.92049 0.92693 1.91461 1.69122 1.83602 1.68071 1.20672 0.99375 0.93511 0.98580 1.21938 0.94215 0.96576 1.03118 0.93375 0.94024 0.93497 0.87652 0.92234 0.93413 0.95768 0.98398 0.95062 0.92933 0.87726 0.90468 0.85636 0.85213 0.85064 0.91437 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.13 -2.47 4.68 -26.73 -0.12 -2.59 16 3 C 0.07 1.38 4.71 -3.82 -0.02 1.36 16 4 N -0.53 -10.66 4.49 -226.41 -1.02 -11.67 16 5 C 0.19 4.57 3.40 -4.98 -0.02 4.56 16 6 C -0.51 -13.36 7.02 -34.44 -0.24 -13.60 16 7 H 0.07 1.92 5.66 -52.48 -0.30 1.63 16 8 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 9 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 10 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.09 1.58 3.11 -66.31 -0.21 1.37 16 15 H 0.08 1.26 7.86 -51.93 -0.41 0.86 16 16 C -0.08 -1.31 6.21 -26.84 -0.17 -1.48 16 17 C -0.06 -0.90 6.14 -104.21 -0.64 -1.54 16 18 C -0.12 -1.59 10.04 -39.52 -0.40 -1.99 16 19 C -0.10 -1.16 10.04 -39.64 -0.40 -1.56 16 20 C -0.16 -2.15 10.02 -39.56 -0.40 -2.54 16 21 C 0.10 1.68 7.30 -39.37 -0.29 1.39 16 22 F -0.14 -2.39 17.25 2.25 0.04 -2.36 16 23 C -0.12 -2.03 6.12 -104.14 -0.64 -2.67 16 24 C -0.12 -2.13 5.92 -26.86 -0.16 -2.29 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 2.31 5.20 -51.93 -0.27 2.04 16 29 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 30 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 31 H 0.02 0.47 7.80 -51.93 -0.41 0.07 16 32 H 0.00 -0.04 6.44 -51.93 -0.33 -0.38 16 33 H 0.03 0.82 5.93 -51.93 -0.31 0.51 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.10 1.99 6.08 -51.93 -0.32 1.67 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 2.09 5.55 -51.93 -0.29 1.81 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -28.31 325.50 -9.74 -38.05 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.97 Total: 2.39 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.42 Total: -22.10 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.28 Total: -36.94 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.31 -9.74 -38.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171806140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.850 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds