Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 N 1.46900 * 109.47418 * 174.51171 * 3 2 1 5 5 C 1.46894 * 111.00313 * 73.39670 * 4 3 2 6 6 C 1.50700 * 109.47192 * 286.20359 * 5 4 3 7 7 H 1.08005 * 120.00063 * 357.16268 * 6 5 4 8 8 C 1.37880 * 120.00225 * 177.15650 * 6 5 4 9 9 N 1.31513 * 119.99467 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47141 * 59.99634 * 10 8 6 12 12 H 1.48501 * 109.47182 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47123 * 299.99838 * 10 8 6 14 14 C 1.46896 * 110.99875 * 197.35716 * 4 3 2 15 15 H 1.08999 * 110.73658 * 48.01512 * 14 4 3 16 16 C 1.54353 * 110.82273 * 171.42281 * 14 4 3 17 17 C 1.51374 * 105.16609 * 144.76083 * 16 14 4 18 18 C 1.38522 * 130.37405 * 162.78440 * 17 16 14 19 19 C 1.38109 * 120.27043 * 180.02562 * 18 17 16 20 20 C 1.38211 * 119.96408 * 359.71074 * 19 18 17 21 21 C 1.38334 * 119.90712 * 0.56670 * 20 19 18 22 22 F 1.35097 * 119.92302 * 179.72391 * 21 20 19 23 23 C 1.38178 * 109.76291 * 342.81009 * 17 16 14 24 24 C 1.51362 * 109.76973 * 0.02562 * 23 17 16 25 25 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47215 * 300.00112 * 1 2 3 27 27 H 1.09002 * 109.47061 * 59.99922 * 1 2 3 28 28 H 1.09004 * 109.47255 * 239.99892 * 2 1 3 29 29 H 1.09002 * 109.47061 * 120.00077 * 2 1 3 30 30 H 1.08995 * 109.47259 * 54.50463 * 3 2 1 31 31 H 1.09005 * 109.47185 * 294.50658 * 3 2 1 32 32 H 1.08993 * 109.46946 * 46.20462 * 5 4 3 33 33 H 1.09004 * 109.47082 * 166.20523 * 5 4 3 34 34 H 0.97008 * 119.99447 * 180.02562 * 9 8 6 35 35 H 1.09000 * 110.30192 * 25.84388 * 16 14 4 36 36 H 1.08995 * 110.38737 * 263.73050 * 16 14 4 37 37 H 1.08003 * 119.86023 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.01361 * 180.02562 * 19 18 17 39 39 H 1.08005 * 120.05219 * 180.27169 * 20 19 18 40 40 H 1.09002 * 110.30174 * 136.10197 * 24 23 17 41 41 H 1.09000 * 110.30773 * 258.26180 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5031 1.4446 0.1325 5 6 4.1454 1.0118 -1.1157 6 6 3.9716 -0.4761 -1.2804 7 1 3.4776 -1.0506 -0.5108 8 6 4.4431 -1.1040 -2.4138 9 7 5.0449 -0.4044 -3.3508 10 14 4.2270 -2.9481 -2.6183 11 1 2.7803 -3.2822 -2.5987 12 1 4.8167 -3.3751 -3.9126 13 1 4.9130 -3.6532 -1.5059 14 6 3.9923 2.7667 0.5454 15 1 3.4151 3.1457 1.3888 16 6 5.4959 2.7123 0.8900 17 6 6.0549 4.0433 0.4347 18 6 7.2427 4.6767 0.7616 19 6 7.5480 5.9082 0.2160 20 6 6.6690 6.5102 -0.6645 21 6 5.4794 5.8829 -0.9885 22 9 4.6175 6.4737 -1.8448 23 6 5.1720 4.6461 -0.4407 24 6 3.9585 3.7621 -0.6335 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5987 1.9839 0.8366 31 1 1.7593 1.9272 -0.9351 32 1 3.6850 1.5269 -1.9587 33 1 5.2081 1.2517 -1.0796 34 1 5.3764 -0.8462 -4.1484 35 1 5.9778 1.8958 0.3522 36 1 5.6351 2.5911 1.9642 37 1 7.9328 4.2056 1.4458 38 1 8.4754 6.3982 0.4734 39 1 6.9084 7.4712 -1.0953 40 1 3.0468 4.3586 -0.5993 41 1 4.0265 3.2276 -1.5810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171806140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -34.155959 kcal Electronic energy + Delta-G solvation = -21826.824491 eV Core-core repulsion = 18620.097825 eV Total energy + Delta-G solvation = -3206.726666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.90699 -41.29063 -38.89815 -35.93771 -34.63352 -33.14284 -31.93245 -29.78147 -28.78077 -28.21681 -26.15836 -24.41284 -22.82352 -22.45412 -21.78889 -20.51870 -18.68271 -18.11912 -17.39269 -16.90410 -16.79054 -16.52910 -16.39665 -15.99705 -15.47088 -15.00226 -14.75267 -14.40836 -14.13364 -13.87940 -13.79165 -13.78424 -13.44621 -13.17623 -12.91103 -12.69456 -12.55884 -12.46511 -12.28290 -12.25857 -12.04834 -12.02152 -11.57280 -11.55328 -11.24060 -10.92362 -10.47401 -9.60973 -9.59854 -9.00954 -8.13697 -6.18810 0.18696 0.24340 1.42689 1.44743 1.52039 2.42963 2.60458 3.09930 3.18576 3.30066 3.38678 3.72958 4.00286 4.03329 4.07089 4.24608 4.31730 4.38870 4.43659 4.50080 4.61661 4.69179 4.73517 4.80794 4.83726 4.86662 5.02796 5.08976 5.11197 5.11980 5.19047 5.26167 5.35834 5.38087 5.39954 5.53286 5.57101 5.74809 5.79747 5.95962 6.15422 6.40903 6.68174 6.94615 7.46933 8.96774 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.005264 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.727497 B = 5317.699612 C = 6004.505029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.073 3.927 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.510 4.510 7 H 0.080 0.920 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.958 3.042 11 H -0.267 1.267 12 H -0.290 1.290 13 H -0.267 1.267 14 C 0.089 3.911 15 H 0.107 0.893 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.118 4.118 19 C -0.084 4.084 20 C -0.157 4.157 21 C 0.079 3.921 22 F -0.156 7.156 23 C -0.149 4.149 24 C -0.113 4.113 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.007 0.993 32 H -0.038 1.038 33 H 0.007 0.993 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 10.826 10.077 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.055 4.055 4 N -0.251 5.251 5 C 0.085 3.915 6 C -0.548 4.548 7 H 0.098 0.902 8 C -0.198 4.198 9 N -0.580 5.580 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.216 1.216 13 H -0.192 1.192 14 C -0.021 4.021 15 H 0.125 0.875 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.136 4.136 19 C -0.101 4.101 20 C -0.175 4.175 21 C 0.060 3.940 22 F -0.134 7.134 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.025 0.975 32 H -0.021 1.021 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.177 0.823 40 H 0.089 0.911 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.115 10.469 10.255 14.698 hybrid contribution -0.464 -0.184 -1.831 1.898 sum 0.651 10.285 8.424 13.311 Atomic orbital electron populations 1.21717 0.94935 1.01744 1.01537 1.21844 0.95353 0.96501 1.02929 1.21967 0.87250 0.97651 0.98589 1.62241 1.05937 1.23091 1.33806 1.19421 0.92914 0.94838 0.84377 1.21710 1.35933 0.93488 1.03645 0.90178 1.25851 0.95340 1.02770 0.95851 1.70109 1.40730 1.37611 1.09509 0.85598 0.78806 0.80119 0.77144 1.19143 1.21595 1.19238 1.22504 0.96263 0.87487 0.95816 0.87482 1.21123 0.94208 0.93143 1.02630 1.20718 0.94588 0.95928 0.95972 1.21093 0.95544 0.95653 1.01273 1.21328 0.99841 0.94336 0.94606 1.21359 0.92412 1.02393 1.01375 1.17779 0.90532 0.92335 0.93373 1.91424 1.69750 1.83704 1.68567 1.20687 0.99548 0.94455 1.00371 1.21729 0.95506 0.96749 1.01169 0.92338 0.91659 0.93619 0.91482 0.92299 0.90218 0.97514 1.02072 0.97466 0.93164 0.91075 0.87910 0.82784 0.80816 0.82310 0.91062 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -4.78 4.68 30.59 0.14 -4.63 16 3 C 0.07 2.75 4.71 86.30 0.41 3.16 16 4 N -0.53 -22.00 4.49 -870.22 -3.90 -25.91 16 5 C 0.21 10.92 3.40 85.56 0.29 11.22 16 6 C -0.51 -27.87 7.02 25.60 0.18 -27.69 16 7 H 0.08 4.21 5.66 -2.91 -0.02 4.20 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.94 -56.89 13.29 21.45 0.28 -56.61 16 10 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 C 0.09 3.12 3.11 45.83 0.14 3.26 16 15 H 0.11 3.21 7.86 -2.39 -0.02 3.19 16 16 C -0.07 -2.44 6.21 30.52 0.19 -2.25 16 17 C -0.07 -2.20 6.14 -19.60 -0.12 -2.33 16 18 C -0.12 -2.77 10.04 22.31 0.22 -2.54 16 19 C -0.08 -1.66 10.04 22.23 0.22 -1.44 16 20 C -0.16 -3.74 10.02 22.29 0.22 -3.52 16 21 C 0.08 2.51 7.30 22.41 0.16 2.68 16 22 F -0.16 -5.31 17.25 44.97 0.78 -4.53 16 23 C -0.15 -5.16 6.12 -19.55 -0.12 -5.28 16 24 C -0.11 -4.25 5.92 30.51 0.18 -4.07 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 3.01 5.20 -2.38 -0.01 3.00 16 29 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 30 H 0.08 2.49 7.79 -2.39 -0.02 2.47 16 31 H 0.01 0.27 7.80 -2.38 -0.02 0.25 16 32 H -0.04 -2.24 6.44 -2.39 -0.02 -2.25 16 33 H 0.01 0.42 5.93 -2.38 -0.01 0.40 16 34 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 35 H 0.07 2.83 6.08 -2.39 -0.01 2.82 16 36 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 2.64 5.55 -2.39 -0.01 2.63 16 Total: -1.00 -65.39 325.50 3.51 -61.88 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.02 Total: 15.46 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.30 Total: -36.41 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.62 Total: -82.52 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.39 3.51 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171806140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.726 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds