Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 N 1.46498 * 109.46996 * 180.02562 * 16 14 13 18 18 C 1.46503 * 120.00067 * 90.00720 * 17 16 14 19 19 C 1.39001 * 120.00382 * 269.99872 * 17 16 14 20 20 C 1.39140 * 119.70588 * 4.73606 * 19 17 16 21 21 C 1.38302 * 119.09835 * 179.74987 * 20 19 17 22 22 C 1.38882 * 118.50199 * 0.50579 * 21 20 19 23 23 C 1.38015 * 119.33171 * 359.73631 * 22 21 20 24 24 N 1.31965 * 120.85867 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 27 27 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 28 28 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 29 29 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 30 30 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 32 32 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 33 33 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 34 34 H 1.08999 * 109.47540 * 89.99096 * 18 17 16 35 35 H 1.09003 * 109.47089 * 210.00060 * 18 17 16 36 36 H 1.08999 * 109.46655 * 329.99345 * 18 17 16 37 37 H 1.08001 * 120.44957 * 359.97106 * 20 19 17 38 38 H 1.07993 * 120.74599 * 180.25762 * 21 20 19 39 39 H 1.08002 * 120.32792 * 179.70127 * 22 21 20 40 40 H 1.08007 * 119.57203 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 7 -1.3227 3.8698 2.5271 18 6 -2.4724 3.0382 2.8916 19 6 -1.5214 5.1639 2.0602 20 6 -0.4339 5.9136 1.6228 21 6 -0.6466 7.1980 1.1559 22 6 -1.9432 7.6955 1.1519 23 6 -2.9746 6.8982 1.6052 24 7 -2.7429 5.6743 2.0408 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0603 -2.9502 31 1 2.2719 2.1233 1.9977 32 1 0.0672 2.6130 3.4685 33 1 0.7275 4.1530 2.8679 34 1 -2.7090 3.1868 3.9452 35 1 -3.3318 3.3194 2.2829 36 1 -2.2318 1.9894 2.7178 37 1 0.5623 5.4970 1.6442 38 1 0.1776 7.8018 0.8061 39 1 -2.1423 8.6963 0.7982 40 1 -3.9845 7.2814 1.6043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177416723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -8.865355 kcal Electronic energy + Delta-G solvation = -21739.074688 eV Core-core repulsion = 18553.364667 eV Total energy + Delta-G solvation = -3185.710021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34275 -40.41454 -37.53502 -36.52251 -34.28238 -33.38137 -32.84294 -31.29554 -29.97911 -28.60247 -26.43068 -24.95612 -24.09810 -22.89905 -21.79416 -21.05686 -19.06601 -18.54110 -17.57085 -17.45871 -17.12080 -16.59909 -16.30981 -16.04067 -15.49903 -15.45984 -14.91556 -14.56369 -14.52598 -14.03742 -13.90853 -13.81030 -13.52017 -13.16632 -13.00609 -12.91735 -12.79419 -12.64150 -12.49991 -12.18649 -12.05438 -11.58635 -11.26208 -11.04593 -10.73865 -10.55592 -10.40563 -10.32338 -9.58982 -8.49455 -8.14459 -6.32477 0.41204 0.57489 1.45538 1.47068 1.54753 1.87432 1.88606 2.39029 2.74254 3.07265 3.14781 3.65305 3.95765 4.09037 4.13388 4.23217 4.30665 4.41755 4.44685 4.48198 4.55915 4.58482 4.73837 4.76344 4.89391 4.96841 5.06303 5.14510 5.25262 5.43960 5.45006 5.56899 5.65109 5.73442 5.80243 5.89027 6.00123 6.18546 6.40653 6.76712 7.04280 7.24874 7.35717 7.65443 8.90071 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.004445 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.406156 B = 6298.185598 C = 6972.778726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.009 1.009 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.705 5.705 14 C 0.474 3.526 15 O -0.580 6.580 16 C 0.114 3.886 17 N -0.598 5.598 18 C 0.110 3.890 19 C 0.390 3.610 20 C -0.254 4.254 21 C -0.041 4.041 22 C -0.237 4.237 23 C 0.132 3.868 24 N -0.566 5.566 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 10.129 12.484 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.009 0.991 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.355 5.355 14 C 0.259 3.741 15 O -0.460 6.460 16 C -0.014 4.014 17 N -0.310 5.310 18 C -0.032 4.032 19 C 0.156 3.844 20 C -0.279 4.279 21 C -0.067 4.067 22 C -0.259 4.259 23 C -0.025 4.025 24 N -0.285 5.285 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.979 9.308 12.017 17.167 hybrid contribution 1.815 0.127 -0.817 1.994 sum -6.164 9.435 11.200 15.888 Atomic orbital electron populations 1.21640 0.97116 0.98878 1.00034 1.21778 0.93555 0.99351 1.01255 1.18277 0.93462 0.88981 0.81520 0.99082 1.21579 0.91493 1.38777 1.06662 0.90783 1.25772 1.03207 0.94442 0.95079 1.70056 1.37126 1.38481 1.09869 0.85450 0.79254 0.78440 0.77503 1.18783 1.21490 1.19647 1.46250 1.15626 1.56135 1.17488 1.21961 0.81897 0.79064 0.91155 1.90687 1.52478 1.60496 1.42307 1.21533 0.84104 1.00929 0.94811 1.45942 1.06066 1.10250 1.68728 1.21505 0.87806 0.93617 1.00297 1.18525 0.89820 0.86033 0.90021 1.21585 0.99178 0.97626 1.09507 1.21677 0.98547 0.93764 0.92701 1.22127 0.93100 1.03253 1.07407 1.22946 1.00849 0.87553 0.91143 1.67147 1.21756 1.16270 1.23290 0.93806 0.93527 0.96256 0.91358 0.93788 0.92735 0.75966 0.84138 0.85857 0.91326 0.92367 0.91939 0.85644 0.82982 0.82290 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.69 16 3 C 0.28 14.10 2.24 44.25 0.10 14.20 16 4 H -0.01 -0.53 7.58 -2.38 -0.02 -0.55 16 5 C -0.55 -28.22 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.80 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.41 11.29 21.45 0.24 -52.17 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 N -0.70 -27.08 5.02 -446.08 -2.24 -29.32 16 14 C 0.47 17.47 6.43 87.66 0.56 18.03 16 15 O -0.58 -27.24 13.57 -3.03 -0.04 -27.28 16 16 C 0.11 2.88 5.52 85.64 0.47 3.36 16 17 N -0.60 -17.32 2.48 -733.20 -1.82 -19.13 16 18 C 0.11 2.85 10.42 127.77 1.33 4.18 16 19 C 0.39 12.17 7.37 133.07 0.98 13.15 16 20 C -0.25 -7.39 9.19 22.50 0.21 -7.19 16 21 C -0.04 -0.99 10.17 22.44 0.23 -0.76 16 22 C -0.24 -5.01 10.10 22.37 0.23 -4.79 16 23 C 0.13 3.12 11.17 84.62 0.95 4.07 16 24 N -0.57 -17.04 9.16 -193.27 -1.77 -18.81 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.98 5.64 -2.38 -0.01 1.96 16 27 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 28 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 29 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.41 12.61 8.54 -92.71 -0.79 11.82 16 32 H 0.14 2.53 8.07 -2.39 -0.02 2.52 16 33 H 0.12 2.58 6.37 -2.39 -0.02 2.57 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.68 7.45 -2.39 -0.02 1.67 16 36 H 0.06 1.58 8.07 -2.39 -0.02 1.56 16 37 H 0.13 3.57 6.22 -2.91 -0.02 3.55 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -71.72 329.37 3.16 -68.57 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.25 Total: 27.63 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.50 Total: 7.05 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.59 Total: -119.44 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -71.72 3.16 -68.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177416723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.701 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds