Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21513 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.48150 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.39135 * 119.68222 * 179.72568 * 16 14 13 18 18 C 1.38792 * 119.22898 * 179.79098 * 17 16 14 19 19 C 1.38291 * 118.57990 * 0.48162 * 18 17 16 20 20 C 1.39449 * 119.29435 * 359.73739 * 19 18 17 21 21 N 1.38976 * 119.64049 * 180.02562 * 20 19 18 22 22 C 1.46504 * 120.00118 * 5.02637 * 21 20 19 23 23 C 1.46504 * 120.00069 * 185.02556 * 21 20 19 24 24 N 1.32086 * 120.72720 * 0.03119 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08006 * 120.38404 * 0.02562 * 17 16 14 33 33 H 1.08003 * 120.70913 * 180.20106 * 18 17 16 34 34 H 1.08000 * 120.35280 * 179.76914 * 19 18 17 35 35 H 1.08996 * 109.47050 * 89.99582 * 22 21 20 36 36 H 1.09000 * 109.47429 * 210.00219 * 22 21 20 37 37 H 1.08993 * 109.46839 * 330.00163 * 22 21 20 38 38 H 1.09002 * 109.47121 * 90.00621 * 23 21 20 39 39 H 1.09004 * 109.47041 * 209.99825 * 23 21 20 40 40 H 1.08995 * 109.47558 * 329.99946 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3407 2.6326 0.4323 16 6 0.0431 3.3262 2.6331 17 6 -1.2131 3.9144 2.7428 18 6 -1.5723 4.5280 3.9347 19 6 -0.6593 4.5416 4.9733 20 6 0.5850 3.9375 4.7958 21 7 1.5079 3.9465 5.8349 22 6 1.1330 4.4895 7.1429 23 6 2.8556 3.4128 5.6223 24 7 0.8963 3.3571 3.6508 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -1.9020 3.8903 1.9113 33 1 -2.5424 4.9891 4.0471 34 1 -0.9074 5.0144 5.9120 35 1 0.7179 3.6936 7.7612 36 1 2.0149 4.9056 7.6299 37 1 0.3872 5.2732 7.0107 38 1 3.5119 4.2111 5.2757 39 1 3.2385 3.0090 6.5596 40 1 2.8192 2.6215 4.8737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184539700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = 11.176348 kcal Electronic energy + Delta-G solvation = -21634.924352 eV Core-core repulsion = 18450.083404 eV Total energy + Delta-G solvation = -3184.840948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38248 -38.62702 -36.41028 -34.97349 -32.81274 -32.04735 -30.89936 -30.20902 -28.38353 -26.95202 -25.28150 -24.17809 -22.82329 -21.55827 -20.31275 -19.26941 -18.01233 -16.96352 -16.32583 -15.64152 -15.43996 -15.30891 -15.18734 -14.53402 -14.34459 -14.04643 -13.55254 -13.26159 -12.92413 -12.70974 -12.63009 -12.44665 -12.10113 -11.92930 -11.64767 -11.44440 -11.19921 -10.95061 -10.78155 -10.29062 -10.12782 -10.07968 -9.75018 -9.59771 -9.53362 -8.98591 -8.94831 -8.45132 -7.76464 -7.55838 -6.07488 -4.16145 0.99943 1.53718 2.84315 3.27850 3.34506 3.36972 3.39417 4.01396 4.31498 4.38514 4.55159 4.79935 4.99139 5.06557 5.18819 5.23612 5.25480 5.33438 5.43785 5.52686 5.61621 5.76234 5.91315 6.08782 6.34194 6.44710 6.51969 6.56827 6.71579 6.83383 7.10799 7.24767 7.30122 7.41899 7.50261 7.67908 7.79007 7.94411 8.13476 8.22704 8.76224 8.82778 9.18119 9.50783 10.98015 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004997 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.956318 B = 5602.458002 C = 6710.241842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.552 3.448 15 O -0.541 6.541 16 C 0.143 3.857 17 C -0.178 4.178 18 C -0.042 4.042 19 C -0.229 4.229 20 C 0.396 3.604 21 N -0.621 5.621 22 C 0.098 3.902 23 C 0.097 3.903 24 N -0.516 5.516 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 7.360 17.374 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.329 5.329 14 C 0.335 3.665 15 O -0.420 6.420 16 C 0.003 3.997 17 C -0.201 4.201 18 C -0.068 4.068 19 C -0.254 4.254 20 C 0.161 3.839 21 N -0.336 5.336 22 C -0.046 4.046 23 C -0.045 4.045 24 N -0.236 5.236 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.082 6.816 16.505 18.567 hybrid contribution 0.527 0.379 0.499 0.819 sum -4.556 7.195 17.005 19.018 Atomic orbital electron populations 1.21847 0.98360 0.98081 1.01236 1.21932 0.92626 0.99690 1.02334 1.18870 0.94367 0.89275 0.80923 0.93139 1.21231 0.90651 1.38831 1.06247 0.92031 1.24876 0.98549 0.94853 0.95364 1.69899 1.35058 1.37755 1.09344 0.86457 0.84973 0.78421 0.77308 1.20575 1.21113 1.19877 1.46407 1.14185 1.53729 1.18616 1.17848 0.83428 0.79683 0.85577 1.90747 1.51883 1.60481 1.38856 1.21312 0.90583 0.95212 0.92558 1.21849 0.97614 1.01415 0.99268 1.21289 0.98679 0.95047 0.91820 1.21537 0.94792 1.07404 1.01659 1.18243 0.87651 0.90805 0.87212 1.46137 1.11932 1.66431 1.09139 1.21662 1.01259 0.98437 0.83222 1.21590 0.81622 0.99436 1.01899 1.67072 1.35682 1.20955 0.99911 0.93062 0.94338 0.95813 0.94992 0.88190 0.92613 0.76809 0.83848 0.84623 0.85007 0.93165 0.91160 0.91240 0.93392 0.92056 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.18 5.45 -26.74 -0.15 -3.32 16 3 C 0.27 6.94 2.24 -69.08 -0.15 6.78 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.30 55.43 0.63 -24.33 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -15.39 5.01 -55.78 -0.28 -15.67 16 14 C 0.55 11.97 6.38 -12.19 -0.08 11.89 16 15 O -0.54 -13.00 13.45 5.35 0.07 -12.93 16 16 C 0.14 2.59 6.75 -83.02 -0.56 2.03 16 17 C -0.18 -2.73 9.62 -39.04 -0.38 -3.11 16 18 C -0.04 -0.51 10.16 -39.36 -0.40 -0.90 16 19 C -0.23 -2.68 9.27 -39.11 -0.36 -3.04 16 20 C 0.40 5.56 7.37 -155.19 -1.14 4.42 16 21 N -0.62 -7.10 3.39 -189.66 -0.64 -7.75 16 22 C 0.10 0.71 10.28 59.85 0.62 1.33 16 23 C 0.10 1.06 10.50 59.85 0.63 1.69 16 24 N -0.52 -8.70 8.25 -9.00 -0.07 -8.78 16 25 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.40 8.38 7.87 -40.82 -0.32 8.06 16 32 H 0.14 2.17 7.63 -52.48 -0.40 1.77 16 33 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.13 1.12 6.02 -52.49 -0.32 0.80 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 5.97 -51.93 -0.31 0.12 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 40 H 0.08 1.08 7.30 -51.93 -0.38 0.70 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -31.15 327.42 -8.06 -39.22 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.62 Total: 7.46 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.06 Total: 1.98 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.37 Total: -56.52 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.15 -8.06 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184539700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.392 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds