Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21513 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.48150 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.39135 * 119.68222 * 179.72568 * 16 14 13 18 18 C 1.38792 * 119.22898 * 179.79098 * 17 16 14 19 19 C 1.38291 * 118.57990 * 0.48162 * 18 17 16 20 20 C 1.39449 * 119.29435 * 359.73739 * 19 18 17 21 21 N 1.38976 * 119.64049 * 180.02562 * 20 19 18 22 22 C 1.46504 * 120.00118 * 5.02637 * 21 20 19 23 23 C 1.46504 * 120.00069 * 185.02556 * 21 20 19 24 24 N 1.32086 * 120.72720 * 0.03119 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08006 * 120.38404 * 0.02562 * 17 16 14 33 33 H 1.08003 * 120.70913 * 180.20106 * 18 17 16 34 34 H 1.08000 * 120.35280 * 179.76914 * 19 18 17 35 35 H 1.08996 * 109.47050 * 89.99582 * 22 21 20 36 36 H 1.09000 * 109.47429 * 210.00219 * 22 21 20 37 37 H 1.08993 * 109.46839 * 330.00163 * 22 21 20 38 38 H 1.09002 * 109.47121 * 90.00621 * 23 21 20 39 39 H 1.09004 * 109.47041 * 209.99825 * 23 21 20 40 40 H 1.08995 * 109.47558 * 329.99946 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3407 2.6326 0.4323 16 6 0.0431 3.3262 2.6331 17 6 -1.2131 3.9144 2.7428 18 6 -1.5723 4.5280 3.9347 19 6 -0.6593 4.5416 4.9733 20 6 0.5850 3.9375 4.7958 21 7 1.5079 3.9465 5.8349 22 6 1.1330 4.4895 7.1429 23 6 2.8556 3.4128 5.6223 24 7 0.8963 3.3571 3.6508 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -1.9020 3.8903 1.9113 33 1 -2.5424 4.9891 4.0471 34 1 -0.9074 5.0144 5.9120 35 1 0.7179 3.6936 7.7612 36 1 2.0149 4.9056 7.6299 37 1 0.3872 5.2732 7.0107 38 1 3.5119 4.2111 5.2757 39 1 3.2385 3.0090 6.5596 40 1 2.8192 2.6215 4.8737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184539700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = -8.917405 kcal Electronic energy + Delta-G solvation = -21635.795683 eV Core-core repulsion = 18450.083404 eV Total energy + Delta-G solvation = -3185.712278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59345 -40.20972 -37.43854 -36.84336 -34.42746 -33.60370 -32.63667 -31.41341 -29.27638 -28.81266 -26.18713 -25.68688 -24.60849 -22.69327 -21.86416 -21.14536 -19.51944 -18.17178 -17.91761 -17.13615 -16.73517 -16.54432 -16.47216 -16.13514 -15.97967 -15.08217 -15.04782 -14.59134 -14.44597 -14.14006 -13.71766 -13.44445 -13.39622 -13.24404 -13.15215 -12.96765 -12.91311 -12.67226 -12.50150 -12.19072 -12.07840 -11.62618 -11.20734 -11.07218 -11.05418 -10.66836 -10.54958 -10.34369 -9.65365 -8.51915 -8.16453 -6.33789 -0.18801 0.50684 1.43913 1.44885 1.55589 1.94509 1.99049 2.34195 2.56613 3.02286 3.12703 3.37341 3.92937 4.10656 4.19368 4.25034 4.45633 4.47566 4.52543 4.55240 4.57169 4.63266 4.73893 4.84591 4.94776 5.01574 5.05148 5.09472 5.23304 5.29820 5.41872 5.53418 5.55652 5.60043 5.76959 5.86763 6.02213 6.14526 6.35161 6.71987 6.85372 7.13310 7.31094 7.49712 8.89206 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.004997 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.956318 B = 5602.458002 C = 6710.241842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.275 3.725 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.685 5.685 14 C 0.549 3.451 15 O -0.575 6.575 16 C 0.109 3.891 17 C -0.184 4.184 18 C -0.032 4.032 19 C -0.208 4.208 20 C 0.379 3.621 21 N -0.622 5.622 22 C 0.090 3.910 23 C 0.096 3.904 24 N -0.542 5.542 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.404 0.596 32 H 0.137 0.863 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 8.543 20.626 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.172 3.828 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.332 5.332 14 C 0.335 3.665 15 O -0.455 6.455 16 C -0.028 4.028 17 C -0.208 4.208 18 C -0.057 4.057 19 C -0.232 4.232 20 C 0.142 3.858 21 N -0.337 5.337 22 C -0.051 4.051 23 C -0.047 4.047 24 N -0.263 5.263 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.155 0.845 33 H 0.197 0.803 34 H 0.192 0.808 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.155 8.011 19.806 21.978 hybrid contribution 0.505 0.090 -0.374 0.635 sum -4.650 8.101 19.432 21.560 Atomic orbital electron populations 1.21678 0.96877 0.99317 1.00212 1.21777 0.93876 0.98899 1.01290 1.18495 0.93939 0.89347 0.80982 0.97920 1.21513 0.91250 1.39229 1.06776 0.91640 1.25751 1.03426 0.94205 0.94814 1.70041 1.37066 1.38202 1.09802 0.85355 0.78948 0.78816 0.77271 1.19521 1.20883 1.19209 1.46202 1.15072 1.54287 1.17627 1.18454 0.82414 0.78821 0.86843 1.90705 1.52581 1.61644 1.40610 1.20717 0.92360 0.98015 0.91700 1.21949 0.96367 1.01693 1.00821 1.21732 1.00403 0.93602 0.89996 1.22029 0.93149 1.05076 1.02967 1.18718 0.89289 0.90846 0.86930 1.46462 1.11474 1.65962 1.09827 1.21959 1.02744 0.99179 0.81248 1.21592 0.81881 0.98674 1.02583 1.66901 1.36109 1.22471 1.00849 0.95033 0.94356 0.93273 0.94466 0.90482 0.92461 0.76075 0.84517 0.80251 0.80796 0.92048 0.89323 0.89636 0.93573 0.89258 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.23 5.45 30.59 0.17 -6.06 16 3 C 0.28 15.08 2.24 44.24 0.10 15.18 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -30.68 8.73 25.60 0.22 -30.46 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -53.24 11.30 21.45 0.24 -53.00 16 9 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.68 -32.54 5.01 -448.70 -2.25 -34.79 16 14 C 0.55 25.10 6.38 86.88 0.55 25.66 16 15 O -0.57 -29.30 13.45 -3.76 -0.05 -29.35 16 16 C 0.11 4.06 6.75 41.84 0.28 4.34 16 17 C -0.18 -5.54 9.62 22.62 0.22 -5.32 16 18 C -0.03 -0.65 10.16 22.41 0.23 -0.43 16 19 C -0.21 -4.01 9.27 22.57 0.21 -3.80 16 20 C 0.38 9.86 7.37 133.24 0.98 10.84 16 21 N -0.62 -12.59 3.39 -753.95 -2.56 -15.15 16 22 C 0.09 0.93 10.28 127.77 1.31 2.24 16 23 C 0.10 1.96 10.50 127.77 1.34 3.30 16 24 N -0.54 -18.30 8.25 -182.38 -1.50 -19.80 16 25 H 0.03 1.58 7.84 -2.39 -0.02 1.57 16 26 H 0.04 1.80 5.65 -2.39 -0.01 1.78 16 27 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 30 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.40 17.93 7.87 -92.71 -0.73 17.20 16 32 H 0.14 4.20 7.63 -2.91 -0.02 4.18 16 33 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.17 1.87 6.02 -2.91 -0.02 1.85 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 37 H 0.09 0.61 5.97 -2.39 -0.01 0.59 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.28 8.07 -2.39 -0.02 1.27 16 40 H 0.06 1.46 7.30 -2.39 -0.02 1.44 16 Total: -1.00 -71.74 327.42 2.91 -68.83 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.32 Total: 26.27 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.68 Total: 11.69 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.07 Total: -122.74 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.05 Total: -29.35 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.74 2.91 -68.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184539700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.917 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds