Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47446 * 2 1 4 4 H 1.08998 * 109.47200 * 305.00418 * 3 2 1 5 5 C 1.50699 * 109.47580 * 184.99882 * 3 2 1 6 6 H 1.07998 * 120.00573 * 240.00448 * 5 3 2 7 7 C 1.37877 * 119.99584 * 59.72736 * 5 3 2 8 8 N 1.31522 * 120.00330 * 0.27947 * 7 5 3 9 9 Si 1.86799 * 120.00113 * 180.27263 * 7 5 3 10 10 H 1.48500 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46880 * 119.99966 * 9 7 5 12 12 H 1.48499 * 109.47271 * 240.00205 * 9 7 5 13 13 N 1.46507 * 109.46861 * 65.00148 * 3 2 1 14 14 C 1.34772 * 119.99990 * 275.00372 * 13 3 2 15 15 O 1.21554 * 120.00462 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.52342 * 359.72487 * 16 14 13 18 18 N 1.31658 * 120.73063 * 179.70292 * 17 16 14 19 19 C 1.31889 * 121.96230 * 0.58603 * 18 17 16 20 20 C 1.38983 * 120.97398 * 359.69768 * 19 18 17 21 21 N 1.39747 * 120.42244 * 179.97438 * 20 19 18 22 22 C 1.46496 * 119.99849 * 174.34493 * 21 20 19 23 23 C 1.46496 * 120.00102 * 354.35022 * 21 20 19 24 24 C 1.39054 * 119.15341 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47648 * 59.99756 * 1 2 3 26 26 H 1.09001 * 109.47446 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47155 * 299.99537 * 1 2 3 28 28 H 1.09006 * 109.47155 * 240.00463 * 2 1 3 29 29 H 1.08996 * 109.47452 * 120.00647 * 2 1 3 30 30 H 0.96995 * 120.00338 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99901 * 95.00385 * 13 3 2 32 32 H 1.07993 * 119.63388 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.50974 * 179.72524 * 19 18 17 34 34 H 1.08996 * 109.47426 * 90.00519 * 22 21 20 35 35 H 1.09004 * 109.46998 * 210.00272 * 22 21 20 36 36 H 1.08998 * 109.47558 * 329.99958 * 22 21 20 37 37 H 1.09001 * 109.47422 * 5.05429 * 23 21 20 38 38 H 1.09001 * 109.47379 * 125.05118 * 23 21 20 39 39 H 1.09002 * 109.46970 * 245.05396 * 23 21 20 40 40 H 1.08000 * 120.88918 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1434 0.8733 -1.2253 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8688 -1.3752 10 1 6.5992 1.5344 -0.1880 11 1 6.4923 -0.5321 -1.4519 12 1 6.4048 1.5997 -2.6046 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6642 1.3671 15 8 -0.3411 2.6325 0.4322 16 6 0.0439 3.3247 2.6308 17 6 0.9244 3.3625 3.7131 18 7 0.5824 3.9546 4.8382 19 6 -0.5972 4.5226 4.9978 20 6 -1.5347 4.5246 3.9718 21 7 -2.7814 5.1294 4.1536 22 6 -3.7147 5.2359 3.0295 23 6 -3.1548 5.6571 5.4682 24 6 -1.2169 3.9162 2.7625 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8295 -0.0699 -2.9452 31 1 2.2720 2.1230 1.9979 32 1 1.8986 2.9049 3.6252 33 1 -0.8379 4.9935 5.9395 34 1 -4.3516 4.3517 3.0010 35 1 -4.3330 6.1250 3.1535 36 1 -3.1543 5.3102 2.0976 37 1 -2.3080 5.5695 6.1489 38 1 -3.4368 6.7056 5.3722 39 1 -3.9976 5.0887 5.8618 40 1 -1.9241 3.9017 1.9464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193817207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = 9.642205 kcal Electronic energy + Delta-G solvation = -21418.904880 eV Core-core repulsion = 18233.997407 eV Total energy + Delta-G solvation = -3184.907473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47558 -38.72198 -36.81811 -35.10017 -32.58692 -32.13328 -31.09570 -30.14442 -28.67881 -26.96905 -25.31532 -23.98991 -22.73901 -22.07098 -20.23811 -19.36469 -18.14845 -16.88145 -16.68075 -16.02740 -15.43863 -15.41454 -15.23449 -14.58707 -14.45511 -14.15695 -13.50014 -13.35347 -13.16171 -12.81445 -12.74112 -12.50233 -12.25145 -12.00511 -11.78676 -11.51474 -11.25379 -10.96140 -10.84391 -10.50964 -10.31611 -10.18603 -9.78507 -9.61585 -9.36203 -9.05685 -8.97094 -8.49793 -7.85447 -7.54434 -6.12150 -4.21459 0.91014 1.43973 2.84063 3.24884 3.32950 3.35774 3.41272 3.99056 4.19189 4.35800 4.42930 4.74149 4.86256 4.90012 5.03606 5.11418 5.19183 5.23355 5.33393 5.35849 5.38392 5.52600 5.60791 5.95930 6.27282 6.39851 6.43229 6.46959 6.66422 6.90978 7.05327 7.14982 7.19649 7.35372 7.41970 7.62275 7.72941 7.89679 8.03292 8.17657 8.62832 8.76828 9.07333 9.45722 10.93217 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.003979 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.360437 B = 7035.969897 C = 7590.360399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.545 3.455 15 O -0.543 6.543 16 C -0.122 4.122 17 C 0.070 3.930 18 N -0.449 5.449 19 C 0.034 3.966 20 C 0.154 3.846 21 N -0.635 5.635 22 C 0.091 3.909 23 C 0.091 3.909 24 C -0.102 4.102 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 8.351 13.315 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.345 5.345 14 C 0.330 3.670 15 O -0.422 6.422 16 C -0.128 4.128 17 C -0.091 4.091 18 N -0.156 5.156 19 C -0.128 4.128 20 C 0.051 3.949 21 N -0.347 5.347 22 C -0.052 4.052 23 C -0.052 4.052 24 C -0.133 4.133 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.271 8.310 13.144 19.206 hybrid contribution 0.593 -0.048 -0.458 0.751 sum -10.678 8.262 12.686 18.526 Atomic orbital electron populations 1.21846 0.98379 0.98091 1.01202 1.21941 0.92607 0.99700 1.02436 1.18851 0.94368 0.89234 0.80729 0.93100 1.21271 0.90606 1.38866 1.06501 0.91903 1.24883 0.98649 0.94761 0.95358 1.69903 1.35050 1.37557 1.09443 0.86396 0.84825 0.77771 0.78145 1.19667 1.20881 1.20905 1.46476 1.14169 1.55136 1.18711 1.17974 0.83156 0.79447 0.86461 1.90735 1.51539 1.60115 1.39836 1.21164 0.95178 1.00034 0.96402 1.22745 0.99693 0.98530 0.88103 1.67490 1.16948 1.06973 1.24194 1.22471 0.89415 1.02321 0.98583 1.18791 0.86885 0.94221 0.94998 1.46218 1.14156 1.63891 1.10485 1.21664 0.92815 1.01318 0.89374 1.21700 1.01023 0.98357 0.84092 1.21229 0.97047 0.98235 0.96763 0.93126 0.95807 0.94335 0.88145 0.94906 0.92612 0.77743 0.82453 0.82853 0.93134 0.91389 0.91011 0.90430 0.92426 0.92812 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.15 0.32 -2.77 16 2 C -0.13 -3.11 5.44 -26.74 -0.15 -3.25 16 3 C 0.27 6.74 2.24 -69.08 -0.16 6.58 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.52 11.28 55.43 0.63 -23.90 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -14.54 4.98 -55.87 -0.28 -14.82 16 14 C 0.55 11.08 6.35 -12.32 -0.08 11.00 16 15 O -0.54 -12.61 13.55 5.32 0.07 -12.54 16 16 C -0.12 -2.05 5.89 -104.84 -0.62 -2.67 16 17 C 0.07 1.07 10.71 -17.13 -0.18 0.88 16 18 N -0.45 -6.59 10.34 -12.75 -0.13 -6.72 16 19 C 0.03 0.43 10.48 -17.25 -0.18 0.25 16 20 C 0.15 1.97 6.55 -83.67 -0.55 1.43 16 21 N -0.63 -6.34 3.41 -187.46 -0.64 -6.98 16 22 C 0.09 0.77 10.13 59.84 0.61 1.38 16 23 C 0.09 0.61 10.63 59.84 0.64 1.25 16 24 C -0.10 -1.54 8.80 -38.66 -0.34 -1.88 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 28 H 0.10 2.68 5.94 -51.93 -0.31 2.38 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 7.09 6.60 -40.82 -0.27 6.82 16 32 H 0.16 2.17 6.41 -52.49 -0.34 1.83 16 33 H 0.15 1.46 5.74 -52.48 -0.30 1.16 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 37 H 0.08 0.47 5.34 -51.93 -0.28 0.19 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.15 2.17 6.10 -52.49 -0.32 1.85 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -30.91 322.69 -6.91 -37.82 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.32 Total: 7.16 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.08 Total: -0.40 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.42 Total: -52.42 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.91 -6.91 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193817207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.463 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds