Wall clock time and date at job start Mon Mar 30 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47446 * 2 1 4 4 H 1.08998 * 109.47200 * 305.00418 * 3 2 1 5 5 C 1.50699 * 109.47580 * 184.99882 * 3 2 1 6 6 H 1.07998 * 120.00573 * 240.00448 * 5 3 2 7 7 C 1.37877 * 119.99584 * 59.72736 * 5 3 2 8 8 N 1.31522 * 120.00330 * 0.27947 * 7 5 3 9 9 Si 1.86799 * 120.00113 * 180.27263 * 7 5 3 10 10 H 1.48500 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46880 * 119.99966 * 9 7 5 12 12 H 1.48499 * 109.47271 * 240.00205 * 9 7 5 13 13 N 1.46507 * 109.46861 * 65.00148 * 3 2 1 14 14 C 1.34772 * 119.99990 * 275.00372 * 13 3 2 15 15 O 1.21554 * 120.00462 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.52342 * 359.72487 * 16 14 13 18 18 N 1.31658 * 120.73063 * 179.70292 * 17 16 14 19 19 C 1.31889 * 121.96230 * 0.58603 * 18 17 16 20 20 C 1.38983 * 120.97398 * 359.69768 * 19 18 17 21 21 N 1.39747 * 120.42244 * 179.97438 * 20 19 18 22 22 C 1.46496 * 119.99849 * 174.34493 * 21 20 19 23 23 C 1.46496 * 120.00102 * 354.35022 * 21 20 19 24 24 C 1.39054 * 119.15341 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47648 * 59.99756 * 1 2 3 26 26 H 1.09001 * 109.47446 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47155 * 299.99537 * 1 2 3 28 28 H 1.09006 * 109.47155 * 240.00463 * 2 1 3 29 29 H 1.08996 * 109.47452 * 120.00647 * 2 1 3 30 30 H 0.96995 * 120.00338 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99901 * 95.00385 * 13 3 2 32 32 H 1.07993 * 119.63388 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.50974 * 179.72524 * 19 18 17 34 34 H 1.08996 * 109.47426 * 90.00519 * 22 21 20 35 35 H 1.09004 * 109.46998 * 210.00272 * 22 21 20 36 36 H 1.08998 * 109.47558 * 329.99958 * 22 21 20 37 37 H 1.09001 * 109.47422 * 5.05429 * 23 21 20 38 38 H 1.09001 * 109.47379 * 125.05118 * 23 21 20 39 39 H 1.09002 * 109.46970 * 245.05396 * 23 21 20 40 40 H 1.08000 * 120.88918 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1434 0.8733 -1.2253 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8688 -1.3752 10 1 6.5992 1.5344 -0.1880 11 1 6.4923 -0.5321 -1.4519 12 1 6.4048 1.5997 -2.6046 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6642 1.3671 15 8 -0.3411 2.6325 0.4322 16 6 0.0439 3.3247 2.6308 17 6 0.9244 3.3625 3.7131 18 7 0.5824 3.9546 4.8382 19 6 -0.5972 4.5226 4.9978 20 6 -1.5347 4.5246 3.9718 21 7 -2.7814 5.1294 4.1536 22 6 -3.7147 5.2359 3.0295 23 6 -3.1548 5.6571 5.4682 24 6 -1.2169 3.9162 2.7625 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8295 -0.0699 -2.9452 31 1 2.2720 2.1230 1.9979 32 1 1.8986 2.9049 3.6252 33 1 -0.8379 4.9935 5.9395 34 1 -4.3516 4.3517 3.0010 35 1 -4.3330 6.1250 3.1535 36 1 -3.1543 5.3102 2.0976 37 1 -2.3080 5.5695 6.1489 38 1 -3.4368 6.7056 5.3722 39 1 -3.9976 5.0887 5.8618 40 1 -1.9241 3.9017 1.9464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193817207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:04 Heat of formation + Delta-G solvation = -10.989907 kcal Electronic energy + Delta-G solvation = -21419.799555 eV Core-core repulsion = 18233.997407 eV Total energy + Delta-G solvation = -3185.802149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67368 -40.25022 -37.72058 -36.97200 -34.39283 -33.54057 -32.68467 -31.33279 -29.48409 -28.79573 -26.23205 -25.50958 -24.40608 -23.16235 -21.87978 -21.08033 -19.48809 -18.33254 -17.92996 -17.26372 -17.03460 -16.70994 -16.39465 -16.09054 -15.97623 -15.21453 -14.95250 -14.61665 -14.54691 -14.32176 -13.80211 -13.51737 -13.45727 -13.34998 -13.17241 -12.99603 -12.87432 -12.69753 -12.52363 -12.15411 -12.06201 -11.60147 -11.44481 -11.16481 -11.04384 -10.59553 -10.55010 -10.38244 -9.66970 -8.41504 -8.15358 -6.32453 -0.28621 0.33840 1.45474 1.46932 1.58719 1.99488 2.04107 2.35422 2.57417 2.92725 3.14436 3.41793 3.74057 3.87667 3.96342 4.07931 4.19724 4.35522 4.49594 4.52124 4.56723 4.59438 4.74727 4.76916 4.83063 4.87910 5.00336 5.06038 5.11814 5.26357 5.38175 5.43245 5.53840 5.61079 5.79214 5.91296 6.13818 6.16492 6.26683 6.74452 6.89289 6.95477 7.32111 7.49150 8.90292 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.003979 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.360437 B = 7035.969897 C = 7590.360399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.695 5.695 14 C 0.546 3.454 15 O -0.580 6.580 16 C -0.139 4.139 17 C 0.064 3.936 18 N -0.457 5.457 19 C 0.044 3.956 20 C 0.162 3.838 21 N -0.633 5.633 22 C 0.086 3.914 23 C 0.083 3.917 24 C -0.116 4.116 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.167 0.833 33 H 0.191 0.809 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 9.412 16.010 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.343 5.343 14 C 0.333 3.667 15 O -0.462 6.462 16 C -0.144 4.144 17 C -0.095 4.095 18 N -0.165 5.165 19 C -0.119 4.119 20 C 0.056 3.944 21 N -0.344 5.344 22 C -0.057 4.057 23 C -0.058 4.058 24 C -0.147 4.147 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.184 0.816 33 H 0.207 0.793 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.512 9.394 15.884 21.750 hybrid contribution 0.485 -0.266 -1.218 1.338 sum -11.027 9.128 14.666 20.494 Atomic orbital electron populations 1.21682 0.97061 0.99203 1.00183 1.21795 0.93703 0.99039 1.01512 1.18449 0.93859 0.89244 0.80972 0.97993 1.21603 0.91267 1.38858 1.06937 0.90964 1.25749 1.03285 0.94320 0.94974 1.70048 1.36972 1.38243 1.09967 0.85324 0.79151 0.77833 0.78195 1.18477 1.20417 1.21030 1.46220 1.14984 1.55269 1.17864 1.18484 0.82265 0.78614 0.87361 1.90707 1.52462 1.61434 1.41557 1.20807 0.96644 1.01897 0.95098 1.22789 0.99821 0.98997 0.87921 1.67565 1.17990 1.07329 1.23586 1.23075 0.88397 1.00804 0.99623 1.18823 0.88204 0.93414 0.93924 1.46549 1.13070 1.62586 1.12160 1.21794 0.92639 1.02785 0.88485 1.21981 1.01913 0.99539 0.82403 1.21231 0.96483 0.99151 0.97867 0.95330 0.93477 0.94116 0.90669 0.93970 0.92568 0.76124 0.81638 0.79270 0.92853 0.88620 0.92488 0.89477 0.90537 0.91455 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.06 5.44 30.59 0.17 -5.90 16 3 C 0.28 14.41 2.24 44.24 0.10 14.51 16 4 H 0.00 0.13 7.58 -2.39 -0.02 0.12 16 5 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.22 11.28 21.45 0.24 -51.98 16 9 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 13 N -0.69 -29.75 4.98 -448.97 -2.23 -31.99 16 14 C 0.55 22.96 6.35 86.79 0.55 23.51 16 15 O -0.58 -28.30 13.55 -3.88 -0.05 -28.36 16 16 C -0.14 -4.70 5.89 -20.01 -0.12 -4.81 16 17 C 0.06 1.92 10.71 85.04 0.91 2.83 16 18 N -0.46 -12.49 10.34 -194.26 -2.01 -14.50 16 19 C 0.04 0.98 10.48 84.86 0.89 1.87 16 20 C 0.16 3.83 6.55 38.25 0.25 4.08 16 21 N -0.63 -10.87 3.41 -747.01 -2.55 -13.41 16 22 C 0.09 1.29 10.13 127.77 1.29 2.58 16 23 C 0.08 0.78 10.63 127.77 1.36 2.14 16 24 C -0.12 -3.49 8.80 22.86 0.20 -3.29 16 25 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.82 5.65 -2.38 -0.01 1.81 16 28 H 0.07 4.16 5.94 -2.38 -0.01 4.15 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.40 14.80 6.60 -92.71 -0.61 14.19 16 32 H 0.17 4.45 6.41 -2.91 -0.02 4.44 16 33 H 0.19 2.75 5.74 -2.91 -0.02 2.74 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.91 8.07 -2.38 -0.02 0.89 16 36 H 0.06 1.04 6.50 -2.39 -0.02 1.02 16 37 H 0.09 0.64 5.34 -2.39 -0.01 0.63 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.14 4.24 6.10 -2.91 -0.02 4.22 16 Total: -1.00 -68.54 322.69 2.77 -65.77 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.45 Total: 25.38 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.89 Total: 4.84 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -6.55 Total: -111.88 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.36 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.54 2.77 -65.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193817207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.779 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds