Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08990 * 109.47173 * 304.99823 * 3 2 1 5 5 C 1.50705 * 109.47260 * 184.99490 * 3 2 1 6 6 H 1.07991 * 119.99976 * 240.00314 * 5 3 2 7 7 C 1.37885 * 119.99592 * 60.00206 * 5 3 2 8 8 N 1.31512 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99577 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47332 * 60.00287 * 9 7 5 11 11 H 1.48510 * 109.46953 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47489 * 299.99960 * 9 7 5 13 13 N 1.46499 * 109.46843 * 65.00023 * 3 2 1 14 14 C 1.34784 * 119.99893 * 274.99901 * 13 3 2 15 15 O 1.21566 * 119.99936 * 359.97438 * 14 13 3 16 16 C 1.47707 * 119.99767 * 179.72982 * 14 13 3 17 17 N 1.31839 * 126.57631 * 359.68398 * 16 14 13 18 18 N 1.28458 * 110.06215 * 179.82472 * 17 16 14 19 19 H 0.96998 * 124.88744 * 180.16867 * 18 17 16 20 20 C 1.35257 * 110.23184 * 0.46722 * 18 17 16 21 21 C 1.35050 * 107.07265 * 359.70954 * 20 18 17 22 22 C 1.50950 * 110.52795 * 180.02562 * 21 20 18 23 23 C 1.54512 * 104.96372 * 16.76421 * 22 21 20 24 24 C 1.51228 * 142.77502 * 179.71235 * 20 18 17 25 25 H 1.09004 * 110.41462 * 44.21883 * 24 20 18 26 26 C 1.53001 * 110.32520 * 282.05770 * 24 20 18 27 27 H 1.08996 * 109.46997 * 60.00461 * 1 2 3 28 28 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47338 * 299.99975 * 1 2 3 30 30 H 1.09003 * 109.47741 * 239.99846 * 2 1 3 31 31 H 1.09005 * 109.47114 * 120.00087 * 2 1 3 32 32 H 0.97008 * 119.99478 * 179.97438 * 8 7 5 33 33 H 0.97005 * 120.00261 * 95.00113 * 13 3 2 34 34 H 1.08992 * 110.34110 * 135.64315 * 22 21 20 35 35 H 1.09001 * 110.33399 * 257.78979 * 22 21 20 36 36 H 1.08996 * 110.93068 * 92.69614 * 23 22 21 37 37 H 1.09001 * 110.93075 * 216.35111 * 23 22 21 38 38 H 1.09002 * 109.47181 * 304.37156 * 26 24 20 39 39 H 1.09000 * 109.47790 * 64.37517 * 26 24 20 40 40 H 1.08999 * 109.47362 * 184.37724 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1471 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5975 0.1473 -0.2347 11 1 6.3980 0.2167 -2.6502 12 1 6.4995 2.2814 -1.3819 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0420 3.3194 2.6311 17 7 0.7724 3.4196 3.7241 18 7 0.1221 4.0546 4.6319 19 1 0.4585 4.2517 5.5201 20 6 -1.1016 4.4033 4.1733 21 6 -1.1919 3.9537 2.9031 22 6 -2.5360 4.3038 2.3120 23 6 -3.1055 5.4015 3.2383 24 6 -2.3813 5.1048 4.5699 25 1 -2.1587 6.0335 5.0954 26 6 -3.2382 4.1908 5.4482 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8295 -0.0612 -2.9497 33 1 2.2719 2.1231 1.9979 34 1 -2.4161 4.6874 1.2989 35 1 -3.1884 3.4305 2.3110 36 1 -2.8493 6.3944 2.8687 37 1 -4.1847 5.2957 3.3497 38 1 -3.4210 3.2519 4.9257 39 1 -2.7150 3.9904 6.3832 40 1 -4.1891 4.6790 5.6615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198464567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = 9.668890 kcal Electronic energy + Delta-G solvation = -21733.776056 eV Core-core repulsion = 18548.869740 eV Total energy + Delta-G solvation = -3184.906316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.90462 -40.43710 -38.33036 -36.92969 -34.33819 -33.41506 -32.54789 -30.89185 -29.64938 -28.95495 -25.74138 -25.64038 -24.43663 -22.28144 -21.58797 -20.99611 -20.85697 -18.79058 -18.32718 -17.38740 -17.21130 -17.01147 -16.18174 -16.02616 -15.60452 -15.05148 -14.73036 -14.57157 -14.06925 -13.87257 -13.48975 -13.40241 -13.35640 -13.23359 -13.17991 -12.92952 -12.66475 -12.38396 -12.19036 -12.06797 -11.80742 -11.68600 -11.61546 -11.54472 -11.08432 -10.93821 -10.53564 -10.35628 -9.66568 -9.59653 -8.16389 -6.33962 0.56211 1.11412 1.43939 1.46433 1.54253 1.75036 2.34840 2.48647 2.59414 3.12395 3.28782 3.60833 3.66845 4.12196 4.13324 4.27761 4.47846 4.52965 4.55580 4.63082 4.71751 4.74194 4.85258 4.93327 5.05487 5.09864 5.19216 5.22825 5.24622 5.27643 5.40552 5.42449 5.48345 5.53217 5.59422 5.77535 5.89399 6.14360 6.18053 6.71447 6.75286 7.02884 7.30639 7.49496 8.89067 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.004158 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.640394 B = 6732.989831 C = 7164.541503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.694 5.694 14 C 0.582 3.418 15 O -0.572 6.572 16 C -0.018 4.018 17 N -0.265 5.265 18 N -0.347 5.347 19 H 0.460 0.540 20 C 0.000 4.000 21 C -0.197 4.197 22 C -0.051 4.051 23 C -0.102 4.102 24 C 0.000 4.000 25 H 0.113 0.887 26 C -0.141 4.141 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.402 0.598 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 9.859 17.908 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.021 0.979 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.368 3.632 15 O -0.451 6.451 16 C -0.177 4.177 17 N -0.102 5.102 18 N -0.061 5.061 19 H 0.308 0.692 20 C -0.128 4.128 21 C -0.207 4.207 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.020 4.020 25 H 0.131 0.869 26 C -0.199 4.199 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.395 9.409 17.439 22.858 hybrid contribution 1.044 -0.132 -0.264 1.085 sum -10.351 9.278 17.175 22.095 Atomic orbital electron populations 1.21670 0.96912 0.99269 1.00177 1.21785 0.93834 0.98925 1.01331 1.18464 0.93864 0.89312 0.80868 0.97913 1.21515 0.91301 1.39413 1.06894 0.91544 1.25756 1.03470 0.94163 0.94812 1.70034 1.37158 1.38062 1.09775 0.85405 0.78874 0.78434 0.77658 1.19036 1.20729 1.19756 1.46208 1.14958 1.55207 1.17798 1.17371 0.82165 0.78117 0.85597 1.90710 1.52641 1.61421 1.40300 1.21438 0.94883 1.07541 0.93870 1.73662 1.23214 1.15159 0.98177 1.42664 1.09726 1.39514 1.14238 0.69185 1.22722 0.90677 1.04343 0.95032 1.21282 0.97067 1.04728 0.97598 1.20494 0.89722 0.99468 0.99301 1.22561 1.01376 0.98057 0.91960 1.20419 0.85513 0.98308 0.97772 0.86925 1.21843 1.00327 0.99057 0.98651 0.95091 0.93276 0.94426 0.90448 0.94399 0.92428 0.76398 0.92404 0.90723 0.89679 0.87070 0.93748 0.91814 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.51 71.98 0.61 -5.30 16 2 C -0.12 -6.28 5.45 30.59 0.17 -6.11 16 3 C 0.28 15.31 2.24 44.25 0.10 15.41 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -31.05 8.73 25.60 0.22 -30.83 16 6 H 0.07 3.56 7.74 -2.92 -0.02 3.54 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -53.40 11.29 21.45 0.24 -53.16 16 9 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.69 -33.18 5.02 -449.11 -2.25 -35.44 16 14 C 0.58 27.23 6.39 86.74 0.55 27.78 16 15 O -0.57 -29.94 14.06 -3.92 -0.06 -29.99 16 16 C -0.02 -0.70 7.13 42.42 0.30 -0.40 16 17 N -0.27 -8.56 11.93 -48.24 -0.58 -9.14 16 18 N -0.35 -7.75 6.84 -47.57 -0.33 -8.07 16 19 H 0.46 5.98 8.96 -220.00 -1.97 4.00 16 20 C 0.00 0.01 7.43 41.46 0.31 0.32 16 21 C -0.20 -6.14 6.82 -19.74 -0.13 -6.28 16 22 C -0.05 -1.31 6.78 30.44 0.21 -1.10 16 23 C -0.10 -1.46 6.65 31.61 0.21 -1.25 16 24 C 0.00 0.00 3.48 -10.87 -0.04 -0.04 16 25 H 0.11 0.87 8.14 -2.38 -0.02 0.86 16 26 C -0.14 -1.45 9.14 71.98 0.66 -0.79 16 27 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 28 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.79 5.64 -2.39 -0.01 1.78 16 30 H 0.08 4.43 5.95 -2.39 -0.01 4.41 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 33 H 0.40 17.65 8.27 -92.70 -0.77 16.88 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.01 7.90 -2.39 -0.02 0.99 16 38 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -73.62 325.52 1.01 -72.61 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -1.67 Total: 24.80 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 3.62 Total: -7.12 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -2.91 Total: -105.80 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -73.62 1.01 -72.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198464567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.280 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds