Wall clock time and date at job start Mon Mar 30 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47591 * 2 1 4 4 H 1.09005 * 109.46851 * 304.89853 * 3 2 1 5 5 C 1.50701 * 109.47467 * 184.90192 * 3 2 1 6 6 H 1.07998 * 120.00078 * 245.45137 * 5 3 2 7 7 C 1.37881 * 119.99925 * 65.44629 * 5 3 2 8 8 N 1.31513 * 120.00254 * 9.47794 * 7 5 3 9 9 Si 1.86798 * 119.99904 * 189.46991 * 7 5 3 10 10 H 1.48498 * 109.47124 * 84.99480 * 9 7 5 11 11 H 1.48494 * 109.47171 * 204.99844 * 9 7 5 12 12 H 1.48503 * 109.47085 * 324.99507 * 9 7 5 13 13 N 1.46491 * 109.47235 * 64.89585 * 3 2 1 14 14 C 1.34782 * 120.00516 * 275.00449 * 13 3 2 15 15 O 1.21283 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00398 * 179.97438 * 14 13 3 17 17 C 1.52994 * 109.47311 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47311 * 179.97438 * 17 16 14 19 19 C 1.38275 * 120.37940 * 269.72165 * 18 17 16 20 20 N 1.31856 * 120.92802 * 179.73147 * 19 18 17 21 21 C 1.31822 * 121.79791 * 0.57686 * 20 19 18 22 22 C 1.38888 * 120.65437 * 359.68588 * 21 20 19 23 23 N 1.39706 * 120.48802 * 180.02562 * 22 21 20 24 24 C 1.38499 * 120.38019 * 89.99661 * 18 17 16 25 25 H 1.08997 * 109.46782 * 300.00368 * 1 2 3 26 26 H 1.09004 * 109.46928 * 60.00041 * 1 2 3 27 27 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47473 * 239.99624 * 2 1 3 29 29 H 1.09009 * 109.47631 * 119.99990 * 2 1 3 30 30 H 0.96994 * 120.00110 * 179.97438 * 8 7 5 31 31 H 0.97007 * 119.99821 * 95.00480 * 13 3 2 32 32 H 1.09004 * 109.47255 * 300.00343 * 16 14 13 33 33 H 1.08995 * 109.47245 * 59.99706 * 16 14 13 34 34 H 1.09002 * 109.46720 * 299.99768 * 17 16 14 35 35 H 1.08995 * 109.47430 * 59.99545 * 17 16 14 36 36 H 1.07996 * 119.53359 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.66713 * 179.70802 * 21 20 19 38 38 H 0.97002 * 120.00444 * 179.97438 * 23 22 21 39 39 H 0.97000 * 120.00551 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.81848 * 359.95766 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 3.4098 0.7113 -2.3326 9 14 5.9920 0.7325 -1.3290 10 1 6.3290 -0.6068 -0.7834 11 1 6.4619 0.8272 -2.7344 12 1 6.6563 1.7807 -0.5133 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6653 1.3635 15 8 -0.3402 2.6322 0.4297 16 6 0.0320 3.3394 2.6503 17 6 -1.3869 3.8951 2.5143 18 6 -1.7882 4.5687 3.8013 19 6 -2.4223 3.8504 4.7982 20 7 -2.7734 4.4276 5.9306 21 6 -2.5481 5.7064 6.1575 22 6 -1.9204 6.4953 5.2021 23 7 -1.6829 7.8501 5.4464 24 6 -1.5311 5.9155 3.9968 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8313 0.3851 -3.1430 31 1 2.2688 2.1243 1.9977 32 1 0.0617 2.6152 3.4645 33 1 0.7230 4.1547 2.8640 34 1 -1.4169 4.6193 1.7001 35 1 -2.0777 3.0796 2.3007 36 1 -2.6295 2.8011 4.6489 37 1 -2.8545 6.1450 7.0957 38 1 -1.2436 8.3945 4.7744 39 1 -1.9573 8.2467 6.2881 40 1 -1.0406 6.5016 3.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:23 Heat of formation + Delta-G solvation = -25.227770 kcal Electronic energy + Delta-G solvation = -20846.822567 eV Core-core repulsion = 17660.403019 eV Total energy + Delta-G solvation = -3186.419549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35858 -38.99645 -35.56142 -35.12018 -34.17264 -32.33550 -31.20919 -30.15360 -28.98657 -27.03392 -24.91515 -23.39464 -22.89448 -21.46023 -20.07383 -19.28125 -17.65290 -17.23412 -16.97275 -16.45475 -15.60972 -15.40124 -15.26769 -14.81224 -14.39883 -14.05246 -13.50096 -13.35515 -13.10558 -12.86263 -12.62380 -12.19059 -11.98294 -11.68482 -11.46276 -11.43477 -11.33537 -11.00725 -10.86971 -10.76231 -10.33834 -10.18520 -9.67865 -9.54706 -9.44034 -9.09487 -8.86469 -8.47278 -7.90212 -7.80689 -6.14392 -4.19656 1.12602 1.34407 3.24794 3.31689 3.32725 3.45908 3.48514 3.77229 4.13893 4.37882 4.55316 4.74642 4.79755 5.02187 5.09649 5.18587 5.23807 5.38330 5.50531 5.68739 5.84024 5.90793 5.96050 6.25740 6.36047 6.37767 6.40782 6.50743 6.61522 7.00482 7.07559 7.18286 7.34243 7.36271 7.45235 7.62749 7.72787 7.86125 7.99851 8.09133 8.71214 8.80749 9.18258 9.46650 10.93790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003273 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.890222 B = 8553.027795 C = 9088.051819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.550 6.550 16 C -0.136 4.136 17 C -0.062 4.062 18 C -0.074 4.074 19 C 0.040 3.960 20 N -0.445 5.445 21 C 0.014 3.986 22 C 0.167 3.833 23 N -0.873 5.873 24 C -0.156 4.156 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.400 0.600 39 H 0.399 0.601 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 10.520 14.547 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.430 6.430 16 C -0.176 4.176 17 C -0.100 4.100 18 C -0.077 4.077 19 C -0.119 4.119 20 N -0.152 5.152 21 C -0.148 4.148 22 C 0.060 3.940 23 N -0.412 5.412 24 C -0.186 4.186 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.228 0.772 39 H 0.228 0.772 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.346 9.871 14.294 19.726 hybrid contribution 1.918 0.761 -0.277 2.082 sum -7.428 10.632 14.017 19.097 Atomic orbital electron populations 1.21837 0.98000 0.98123 1.01537 1.21850 0.93017 0.99937 1.01095 1.18771 0.94231 0.88902 0.81484 0.92674 1.21194 0.90699 1.43959 1.01750 0.92153 1.24888 0.98412 0.95181 0.95011 1.69981 1.35728 1.43794 1.02134 0.86546 0.85091 0.78724 0.77239 1.20422 1.21192 1.19941 1.46497 1.14795 1.56017 1.18440 1.20359 0.82724 0.79370 0.89104 1.90671 1.51547 1.60087 1.40654 1.21650 0.97268 1.01206 0.97498 1.20290 0.95980 1.00718 0.93014 1.20806 0.96155 0.93549 0.97182 1.22430 0.99817 1.00397 0.89268 1.67468 1.15580 1.10645 1.21491 1.22172 1.03292 0.90087 0.99280 1.18852 0.94779 0.85791 0.94590 1.42360 1.69322 1.07109 1.22451 1.20991 1.05314 0.95386 0.96917 0.93946 0.92988 0.95836 0.90342 0.94764 0.92569 0.78046 0.89421 0.89588 0.89977 0.89660 0.82987 0.83546 0.77199 0.77236 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.12 -2.85 5.50 -26.73 -0.15 -3.00 16 3 C 0.27 6.64 2.11 -69.09 -0.15 6.49 16 4 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 5 C -0.54 -14.09 8.66 -34.44 -0.30 -14.39 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.82 12.16 55.43 0.67 -24.14 16 9 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.71 -14.23 5.02 -54.93 -0.28 -14.51 16 14 C 0.50 9.31 6.39 -10.98 -0.07 9.24 16 15 O -0.55 -12.19 13.12 5.55 0.07 -12.12 16 16 C -0.14 -1.81 5.68 -27.89 -0.16 -1.97 16 17 C -0.06 -0.78 4.66 -27.89 -0.13 -0.91 16 18 C -0.07 -0.86 5.15 -104.51 -0.54 -1.40 16 19 C 0.04 0.48 10.85 -17.53 -0.19 0.29 16 20 N -0.44 -5.57 10.35 -13.08 -0.14 -5.71 16 21 C 0.01 0.15 11.06 -17.32 -0.19 -0.04 16 22 C 0.17 1.58 6.79 -83.63 -0.57 1.01 16 23 N -0.87 -5.27 9.10 32.49 0.30 -4.97 16 24 C -0.16 -1.63 9.73 -39.09 -0.38 -2.01 16 25 H 0.04 0.89 5.65 -51.93 -0.29 0.59 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 2.06 6.80 -51.93 -0.35 1.71 16 29 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 6.76 8.53 -40.82 -0.35 6.41 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.09 8.05 -51.93 -0.42 0.68 16 35 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.40 1.89 8.86 -40.82 -0.36 1.52 16 39 H 0.40 1.60 8.85 -40.82 -0.36 1.23 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -31.52 333.80 -7.81 -39.32 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.85 Total: 9.22 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.59 Total: -7.61 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.56 Total: -49.33 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.52 -7.81 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.093 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds