Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47591 * 2 1 4 4 H 1.09005 * 109.46851 * 304.89853 * 3 2 1 5 5 C 1.50701 * 109.47467 * 184.90192 * 3 2 1 6 6 H 1.07998 * 120.00078 * 245.45137 * 5 3 2 7 7 C 1.37881 * 119.99925 * 65.44629 * 5 3 2 8 8 N 1.31513 * 120.00254 * 9.47794 * 7 5 3 9 9 Si 1.86798 * 119.99904 * 189.46991 * 7 5 3 10 10 H 1.48498 * 109.47124 * 84.99480 * 9 7 5 11 11 H 1.48494 * 109.47171 * 204.99844 * 9 7 5 12 12 H 1.48503 * 109.47085 * 324.99507 * 9 7 5 13 13 N 1.46491 * 109.47235 * 64.89585 * 3 2 1 14 14 C 1.34782 * 120.00516 * 275.00449 * 13 3 2 15 15 O 1.21283 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00398 * 179.97438 * 14 13 3 17 17 C 1.52994 * 109.47311 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47311 * 179.97438 * 17 16 14 19 19 C 1.38275 * 120.37940 * 269.72165 * 18 17 16 20 20 N 1.31856 * 120.92802 * 179.73147 * 19 18 17 21 21 C 1.31822 * 121.79791 * 0.57686 * 20 19 18 22 22 C 1.38888 * 120.65437 * 359.68588 * 21 20 19 23 23 N 1.39706 * 120.48802 * 180.02562 * 22 21 20 24 24 C 1.38499 * 120.38019 * 89.99661 * 18 17 16 25 25 H 1.08997 * 109.46782 * 300.00368 * 1 2 3 26 26 H 1.09004 * 109.46928 * 60.00041 * 1 2 3 27 27 H 1.08992 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47473 * 239.99624 * 2 1 3 29 29 H 1.09009 * 109.47631 * 119.99990 * 2 1 3 30 30 H 0.96994 * 120.00110 * 179.97438 * 8 7 5 31 31 H 0.97007 * 119.99821 * 95.00480 * 13 3 2 32 32 H 1.09004 * 109.47255 * 300.00343 * 16 14 13 33 33 H 1.08995 * 109.47245 * 59.99706 * 16 14 13 34 34 H 1.09002 * 109.46720 * 299.99768 * 17 16 14 35 35 H 1.08995 * 109.47430 * 59.99545 * 17 16 14 36 36 H 1.07996 * 119.53359 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.66713 * 179.70802 * 21 20 19 38 38 H 0.97002 * 120.00444 * 179.97438 * 23 22 21 39 39 H 0.97000 * 120.00551 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.81848 * 359.95766 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5422 1.4442 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 3.4098 0.7113 -2.3326 9 14 5.9920 0.7325 -1.3290 10 1 6.3290 -0.6068 -0.7834 11 1 6.4619 0.8272 -2.7344 12 1 6.6563 1.7807 -0.5133 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6653 1.3635 15 8 -0.3402 2.6322 0.4297 16 6 0.0320 3.3394 2.6503 17 6 -1.3869 3.8951 2.5143 18 6 -1.7882 4.5687 3.8013 19 6 -2.4223 3.8504 4.7982 20 7 -2.7734 4.4276 5.9306 21 6 -2.5481 5.7064 6.1575 22 6 -1.9204 6.4953 5.2021 23 7 -1.6829 7.8501 5.4464 24 6 -1.5311 5.9155 3.9968 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8313 0.3851 -3.1430 31 1 2.2688 2.1243 1.9977 32 1 0.0617 2.6152 3.4645 33 1 0.7230 4.1547 2.8640 34 1 -1.4169 4.6193 1.7001 35 1 -2.0777 3.0796 2.3007 36 1 -2.6295 2.8011 4.6489 37 1 -2.8545 6.1450 7.0957 38 1 -1.2436 8.3945 4.7744 39 1 -1.9573 8.2467 6.2881 40 1 -1.0406 6.5016 3.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -47.523248 kcal Electronic energy + Delta-G solvation = -20847.789372 eV Core-core repulsion = 17660.403019 eV Total energy + Delta-G solvation = -3187.386353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21187 -40.53060 -37.03411 -36.10886 -35.23648 -34.24341 -32.92298 -31.23184 -29.79338 -28.87930 -26.11461 -24.78335 -24.14759 -22.53582 -21.66192 -20.96324 -18.85386 -18.35386 -17.88619 -17.48530 -17.15465 -16.89621 -16.57092 -16.05355 -15.79827 -15.15958 -14.82286 -14.61488 -14.54513 -13.98997 -13.87854 -13.60570 -13.36268 -13.24064 -13.10523 -12.87041 -12.72034 -12.59569 -12.19290 -12.17423 -12.07011 -11.89085 -11.58060 -11.06994 -10.63978 -10.50568 -10.35284 -10.16157 -9.56502 -8.56758 -8.18172 -6.30909 0.30682 0.55007 1.44686 1.45989 1.55131 1.96279 2.38387 2.71236 2.92181 3.00924 3.13451 3.70893 3.90700 4.00824 4.08724 4.11897 4.26753 4.36352 4.49452 4.56697 4.60314 4.69578 4.76309 4.79945 5.01703 5.09468 5.11675 5.24607 5.28437 5.45272 5.49647 5.57032 5.65545 5.74196 5.78250 5.97589 6.11011 6.46416 6.79169 6.94462 7.07920 7.19458 7.36036 7.68408 8.90416 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003273 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.890222 B = 8553.027795 C = 9088.051819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.120 4.120 17 C -0.053 4.053 18 C -0.076 4.076 19 C 0.023 3.977 20 N -0.467 5.467 21 C 0.006 3.994 22 C 0.174 3.826 23 N -0.857 5.857 24 C -0.166 4.166 25 H 0.050 0.950 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.408 0.592 39 H 0.411 0.589 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 11.594 16.897 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.470 6.470 16 C -0.160 4.160 17 C -0.092 4.092 18 C -0.079 4.079 19 C -0.136 4.136 20 N -0.175 5.175 21 C -0.158 4.158 22 C 0.065 3.935 23 N -0.398 5.398 24 C -0.197 4.197 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.238 0.762 39 H 0.242 0.758 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.583 10.987 16.695 21.751 hybrid contribution 1.621 0.542 -0.975 1.968 sum -6.962 11.530 15.719 20.700 Atomic orbital electron populations 1.21679 0.96550 0.99300 1.00607 1.21707 0.94226 0.99144 1.00175 1.18332 0.93512 0.89037 0.81917 0.98009 1.21578 0.91593 1.43571 1.02049 0.91038 1.25769 1.03080 0.94883 0.94638 1.70132 1.37740 1.44868 1.02760 0.85459 0.79408 0.79018 0.77069 1.19665 1.21468 1.18767 1.46293 1.15913 1.56197 1.17389 1.21269 0.81537 0.78421 0.90433 1.90661 1.52493 1.61263 1.42619 1.21591 0.97968 1.01822 0.94580 1.20141 0.95340 1.00198 0.93478 1.20606 0.96874 0.94057 0.96350 1.22523 1.00664 1.00879 0.89550 1.67465 1.16339 1.11839 1.21838 1.22592 1.03086 0.89699 1.00375 1.18865 0.93800 0.86985 0.93887 1.42356 1.68309 1.05846 1.23257 1.21171 1.05617 0.95171 0.97722 0.93117 0.95606 0.93498 0.93326 0.93377 0.92690 0.76248 0.87126 0.87466 0.91046 0.90637 0.82602 0.81330 0.76163 0.75811 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.84 16 2 C -0.11 -5.47 5.50 30.59 0.17 -5.30 16 3 C 0.28 13.94 2.11 44.25 0.09 14.03 16 4 H 0.00 0.12 7.52 -2.38 -0.02 0.10 16 5 C -0.55 -28.88 8.66 25.60 0.22 -28.66 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.90 5.16 84.66 0.44 1.34 16 8 N -0.92 -53.20 12.16 21.45 0.26 -52.94 16 9 Si 0.97 41.96 29.55 68.60 2.03 43.99 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 13 N -0.71 -28.12 5.02 -446.10 -2.24 -30.36 16 14 C 0.50 18.30 6.39 87.66 0.56 18.86 16 15 O -0.59 -26.68 13.12 -3.04 -0.04 -26.72 16 16 C -0.12 -2.98 5.68 29.84 0.17 -2.81 16 17 C -0.05 -1.29 4.66 29.84 0.14 -1.15 16 18 C -0.08 -1.66 5.15 -19.79 -0.10 -1.76 16 19 C 0.02 0.52 10.85 84.70 0.92 1.44 16 20 N -0.47 -11.08 10.35 -195.29 -2.02 -13.10 16 21 C 0.01 0.11 11.06 84.85 0.94 1.04 16 22 C 0.17 2.86 6.79 38.30 0.26 3.12 16 23 N -0.86 -7.76 9.10 -51.12 -0.47 -8.22 16 24 C -0.17 -3.15 9.73 22.59 0.22 -2.93 16 25 H 0.05 2.12 5.65 -2.39 -0.01 2.10 16 26 H 0.02 1.23 7.84 -2.38 -0.02 1.21 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 2.62 6.80 -2.39 -0.02 2.61 16 29 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.40 13.42 8.53 -92.70 -0.79 12.63 16 32 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 1.88 8.05 -2.39 -0.02 1.87 16 35 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 36 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.41 2.60 8.86 -92.71 -0.82 1.78 16 39 H 0.41 1.96 8.85 -92.71 -0.82 1.14 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.74 333.80 0.80 -68.93 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -1.36 Total: 26.06 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.64 Total: -7.64 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.47 Total: -104.62 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.04 Total: -26.72 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.74 0.80 -68.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds