Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47091 * 90.00278 * 9 7 5 11 11 H 1.48498 * 109.47348 * 210.00277 * 9 7 5 12 12 H 1.48503 * 109.46963 * 330.00474 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 N 1.46503 * 109.46888 * 180.02562 * 15 14 13 17 17 C 1.34783 * 120.00033 * 180.02562 * 16 15 14 18 18 O 1.21514 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.48142 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.39823 * 120.92127 * 359.71618 * 19 17 16 21 21 C 1.38147 * 119.00214 * 179.79999 * 20 19 17 22 22 N 1.31816 * 120.89520 * 0.48459 * 21 20 19 23 23 C 1.31813 * 122.04765 * 359.74239 * 22 21 20 24 24 C 1.38146 * 120.89777 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 26 26 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 27 27 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 28 28 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 29 29 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 30 30 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 31 31 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 32 32 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 33 33 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 34 34 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 35 35 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 36 36 H 0.97000 * 119.99867 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.49922 * 0.02562 * 20 19 17 38 38 H 1.08003 * 119.55654 * 180.23149 * 21 20 19 39 39 H 1.07997 * 119.55274 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.50191 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3528 0.9331 -2.8652 12 1 6.5494 2.0765 -0.7357 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 7 1.2287 5.6577 2.2892 17 6 0.9998 6.4452 3.3589 18 8 0.8643 5.9497 4.4601 19 6 0.9134 7.9146 3.1920 20 6 1.0722 8.5055 1.9347 21 6 0.9798 9.8794 1.8238 22 7 0.7552 10.6304 2.8836 23 6 0.6042 10.1145 4.0871 24 6 0.6768 8.7496 4.2881 25 1 -0.3633 0.5981 -0.8357 26 1 -0.3633 -1.0227 -0.1001 27 1 -0.3633 0.4248 0.9358 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.7978 -0.0492 -2.9747 31 1 0.7987 1.7197 1.6189 32 1 2.5182 3.9269 0.6894 33 1 0.7651 3.7925 0.4126 34 1 0.3756 3.8293 2.8612 35 1 2.1288 3.9637 3.1380 36 1 1.3372 6.0531 1.4102 37 1 1.2606 7.8967 1.0628 38 1 1.0973 10.3449 0.8564 39 1 0.4220 10.7676 4.9277 40 1 0.5525 8.3338 5.2771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = -5.501914 kcal Electronic energy + Delta-G solvation = -20506.298719 eV Core-core repulsion = 17320.734547 eV Total energy + Delta-G solvation = -3185.564171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78961 -39.17524 -36.74551 -34.98565 -33.16108 -32.36013 -31.59923 -31.15492 -28.16878 -26.21313 -24.67421 -23.73516 -22.86197 -21.62563 -20.86732 -19.60680 -18.40763 -16.88500 -16.40444 -16.02781 -15.65878 -15.61847 -15.41287 -14.77015 -14.62311 -14.12598 -14.11012 -13.88506 -13.59124 -13.26541 -12.81054 -12.24782 -12.04987 -12.00454 -11.55785 -11.24901 -10.95922 -10.86670 -10.64705 -10.46127 -10.21325 -10.02334 -9.85590 -9.73704 -9.65345 -9.55285 -9.18603 -9.08672 -8.40236 -7.37586 -6.02838 -4.07473 0.41907 0.74525 2.71616 2.93615 3.28955 3.35738 3.39257 3.56895 4.07725 4.29748 4.40116 4.45712 4.62947 4.73564 5.07428 5.18442 5.27244 5.37025 5.40387 5.48345 5.58198 5.73083 5.86838 6.09934 6.11124 6.21428 6.25535 6.29475 6.36143 6.48054 6.78843 7.00077 7.10337 7.32728 7.40176 7.55366 7.71119 7.84461 8.00635 8.17807 8.31426 8.64470 9.00383 9.57939 11.02519 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003262 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.927420 B = 8581.281604 C = 9297.321524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.058 3.942 15 C 0.120 3.880 16 N -0.715 5.715 17 C 0.554 3.446 18 O -0.531 6.531 19 C -0.083 4.083 20 C -0.142 4.142 21 C 0.096 3.904 22 N -0.473 5.473 23 C 0.095 3.905 24 C -0.117 4.117 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.042 0.958 30 H 0.260 0.740 31 H 0.320 0.680 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 15.077 6.703 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.073 4.073 15 C -0.004 4.004 16 N -0.367 5.367 17 C 0.339 3.661 18 O -0.408 6.408 19 C -0.095 4.095 20 C -0.163 4.163 21 C -0.061 4.061 22 N -0.182 5.182 23 C -0.062 4.062 24 C -0.138 4.138 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.236 0.764 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.192 15.485 7.434 18.259 hybrid contribution 0.280 -0.774 -1.102 1.375 sum -5.912 14.711 6.332 17.073 Atomic orbital electron populations 1.21886 0.99544 0.99846 0.99523 1.21778 0.91277 1.00196 1.03236 1.19169 0.95589 0.90061 0.83826 0.97962 1.21204 0.91181 1.36815 1.04295 0.92011 1.24960 0.98184 0.95550 0.95810 1.69867 1.34749 1.39382 1.09562 0.86537 0.85643 0.78481 0.76952 1.20701 1.21410 1.19996 1.60574 1.36299 1.01101 1.33498 1.21951 1.00914 0.91298 0.93129 1.21499 1.02363 0.77028 0.99464 1.45902 1.72067 1.08332 1.10377 1.18147 0.77382 0.85851 0.84689 1.90788 1.49576 1.75419 1.24981 1.20468 1.00410 0.94028 0.94547 1.22425 0.99384 0.97061 0.97399 1.22791 0.95264 0.90188 0.97811 1.67572 1.10055 1.41093 0.99501 1.22826 0.95684 0.92763 0.94946 1.22349 0.97087 0.94291 1.00049 0.93911 0.94278 0.94587 0.88143 0.93897 0.93014 0.86313 0.90066 0.96135 0.91729 0.90241 0.76442 0.84091 0.81988 0.81983 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.65 37.16 0.36 -2.44 16 2 C -0.13 -2.87 5.36 -26.73 -0.14 -3.02 16 3 C 0.22 5.23 2.02 -68.86 -0.14 5.09 16 4 H 0.00 0.07 7.85 -51.93 -0.41 -0.34 16 5 C -0.50 -13.21 8.55 -34.44 -0.29 -13.50 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 N -0.68 -13.61 6.27 -107.95 -0.68 -14.28 16 14 C 0.06 0.97 5.57 -3.82 -0.02 0.95 16 15 C 0.12 1.76 5.98 -4.04 -0.02 1.74 16 16 N -0.72 -8.84 5.51 -61.15 -0.34 -9.18 16 17 C 0.55 7.44 7.80 -12.19 -0.10 7.35 16 18 O -0.53 -8.96 16.45 5.35 0.09 -8.87 16 19 C -0.08 -0.90 5.91 -104.65 -0.62 -1.52 16 20 C -0.14 -1.22 9.62 -39.02 -0.38 -1.60 16 21 C 0.10 0.81 11.17 -17.59 -0.20 0.61 16 22 N -0.47 -4.68 10.34 -13.31 -0.14 -4.82 16 23 C 0.09 0.83 11.17 -17.59 -0.20 0.63 16 24 C -0.12 -1.15 9.68 -39.03 -0.38 -1.53 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.59 6.65 -51.93 -0.35 0.25 16 28 H 0.10 2.58 5.94 -51.93 -0.31 2.28 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.32 5.82 6.65 -39.29 -0.26 5.56 16 32 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 3.91 6.62 -40.82 -0.27 3.64 16 37 H 0.14 0.88 6.54 -52.49 -0.34 0.54 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.38 7.74 -52.48 -0.41 0.97 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -31.02 335.48 -8.30 -39.32 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.68 Total: 6.80 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.22 Total: -5.84 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.53 Total: -52.42 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.02 -8.30 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.823 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds