Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47091 * 90.00278 * 9 7 5 11 11 H 1.48498 * 109.47348 * 210.00277 * 9 7 5 12 12 H 1.48503 * 109.46963 * 330.00474 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 N 1.46503 * 109.46888 * 180.02562 * 15 14 13 17 17 C 1.34783 * 120.00033 * 180.02562 * 16 15 14 18 18 O 1.21514 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.48142 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.39823 * 120.92127 * 359.71618 * 19 17 16 21 21 C 1.38147 * 119.00214 * 179.79999 * 20 19 17 22 22 N 1.31816 * 120.89520 * 0.48459 * 21 20 19 23 23 C 1.31813 * 122.04765 * 359.74239 * 22 21 20 24 24 C 1.38146 * 120.89777 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 26 26 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 27 27 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 28 28 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 29 29 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 30 30 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 31 31 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 32 32 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 33 33 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 34 34 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 35 35 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 36 36 H 0.97000 * 119.99867 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.49922 * 0.02562 * 20 19 17 38 38 H 1.08003 * 119.55654 * 180.23149 * 21 20 19 39 39 H 1.07997 * 119.55274 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.50191 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3528 0.9331 -2.8652 12 1 6.5494 2.0765 -0.7357 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 7 1.2287 5.6577 2.2892 17 6 0.9998 6.4452 3.3589 18 8 0.8643 5.9497 4.4601 19 6 0.9134 7.9146 3.1920 20 6 1.0722 8.5055 1.9347 21 6 0.9798 9.8794 1.8238 22 7 0.7552 10.6304 2.8836 23 6 0.6042 10.1145 4.0871 24 6 0.6768 8.7496 4.2881 25 1 -0.3633 0.5981 -0.8357 26 1 -0.3633 -1.0227 -0.1001 27 1 -0.3633 0.4248 0.9358 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.7978 -0.0492 -2.9747 31 1 0.7987 1.7197 1.6189 32 1 2.5182 3.9269 0.6894 33 1 0.7651 3.7925 0.4126 34 1 0.3756 3.8293 2.8612 35 1 2.1288 3.9637 3.1380 36 1 1.3372 6.0531 1.4102 37 1 1.2606 7.8967 1.0628 38 1 1.0973 10.3449 0.8564 39 1 0.4220 10.7676 4.9277 40 1 0.5525 8.3338 5.2771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = -27.513694 kcal Electronic energy + Delta-G solvation = -20507.253221 eV Core-core repulsion = 17320.734547 eV Total energy + Delta-G solvation = -3186.518674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62877 -40.13703 -38.37205 -36.31968 -34.45492 -33.75545 -32.81583 -32.19281 -29.64507 -27.92259 -25.70415 -24.65285 -24.31829 -22.98046 -21.88438 -21.39695 -19.32450 -18.40262 -17.76515 -16.97110 -16.80550 -16.69502 -16.48637 -16.22870 -16.02744 -15.58887 -15.05448 -14.86082 -14.68242 -14.55860 -14.41636 -13.83333 -13.48963 -13.19752 -12.99938 -12.72021 -12.63948 -12.55821 -12.36052 -11.97414 -11.62143 -11.51891 -11.37132 -11.04355 -11.02415 -10.55260 -10.42396 -10.23649 -10.20816 -9.05930 -8.06790 -6.18557 -0.37676 0.08643 1.42086 1.44262 1.53282 1.75454 1.89322 2.44628 2.83349 3.18836 3.40346 3.50481 3.70528 3.78734 3.93671 4.03715 4.06122 4.20126 4.50911 4.52185 4.54713 4.58264 4.71410 4.78238 4.80739 4.94208 4.95757 5.03570 5.11822 5.22884 5.26876 5.37797 5.59444 5.59954 5.74977 5.89084 6.31754 6.36613 6.47866 6.88598 6.93244 6.95726 6.99797 7.50608 8.96293 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003262 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.927420 B = 8581.281604 C = 9297.321524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.023 1.023 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.688 5.688 14 C 0.065 3.935 15 C 0.135 3.865 16 N -0.706 5.706 17 C 0.555 3.445 18 O -0.571 6.571 19 C -0.102 4.102 20 C -0.136 4.136 21 C 0.095 3.905 22 N -0.490 5.490 23 C 0.096 3.904 24 C -0.125 4.125 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.164 0.836 38 H 0.192 0.808 39 H 0.189 0.811 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 16.357 6.586 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.006 1.006 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.321 5.321 14 C -0.065 4.065 15 C 0.011 3.989 16 N -0.358 5.358 17 C 0.342 3.658 18 O -0.451 6.451 19 C -0.113 4.113 20 C -0.156 4.156 21 C -0.062 4.062 22 N -0.200 5.200 23 C -0.061 4.061 24 C -0.146 4.146 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.252 0.748 37 H 0.182 0.818 38 H 0.209 0.791 39 H 0.206 0.794 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.511 16.787 7.304 19.431 hybrid contribution 0.365 -1.123 -1.064 1.590 sum -6.146 15.664 6.240 17.946 Atomic orbital electron populations 1.21755 0.96186 1.01174 1.00604 1.21617 0.94308 0.99009 1.01260 1.18925 0.94030 0.90679 0.84426 1.00562 1.21472 0.92858 1.36767 1.04096 0.93214 1.25635 1.02040 0.95329 0.95635 1.69987 1.36158 1.39837 1.09854 0.85633 0.81041 0.78400 0.76966 1.20545 1.20922 1.19638 1.60406 1.37311 1.02825 1.31572 1.21858 1.00613 0.89519 0.94488 1.21150 1.01794 0.78344 0.97593 1.45740 1.71632 1.07307 1.11112 1.18540 0.76261 0.86980 0.84019 1.90763 1.51531 1.76363 1.26476 1.20365 1.02486 0.92344 0.96075 1.22654 0.98299 0.97528 0.97146 1.23296 0.94129 0.90087 0.98657 1.67645 1.10463 1.41733 1.00150 1.23212 0.94761 0.92548 0.95535 1.22457 0.97380 0.94866 0.99910 0.94255 0.92578 0.92287 0.91330 0.94561 0.93044 0.84992 0.91642 0.94736 0.91402 0.92003 0.74788 0.81849 0.79147 0.79394 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.65 71.98 0.69 -4.29 16 2 C -0.12 -5.61 5.36 30.60 0.16 -5.45 16 3 C 0.23 10.86 2.02 44.17 0.09 10.94 16 4 H -0.02 -1.21 7.85 -2.39 -0.02 -1.23 16 5 C -0.51 -27.62 8.55 25.60 0.22 -27.40 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -51.31 11.29 21.45 0.24 -51.07 16 9 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.69 -27.12 6.27 -495.44 -3.11 -30.23 16 14 C 0.07 2.15 5.57 86.30 0.48 2.63 16 15 C 0.14 3.89 5.98 86.38 0.52 4.40 16 16 N -0.71 -16.68 5.51 -465.67 -2.57 -19.25 16 17 C 0.55 14.59 7.80 86.87 0.68 15.27 16 18 O -0.57 -19.41 16.45 -3.76 -0.06 -19.47 16 19 C -0.10 -2.09 5.91 -19.88 -0.12 -2.20 16 20 C -0.14 -2.04 9.62 22.63 0.22 -1.82 16 21 C 0.09 1.35 11.17 84.67 0.95 2.30 16 22 N -0.49 -8.66 10.34 -196.01 -2.03 -10.69 16 23 C 0.10 1.51 11.17 84.67 0.95 2.46 16 24 C -0.13 -2.36 9.68 22.63 0.22 -2.14 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.82 6.65 -2.39 -0.02 1.80 16 28 H 0.07 3.58 5.94 -2.39 -0.01 3.57 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.33 11.63 6.65 -89.69 -0.60 11.04 16 32 H 0.07 2.37 7.92 -2.39 -0.02 2.35 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 7.37 6.62 -92.71 -0.61 6.76 16 37 H 0.16 1.58 6.54 -2.91 -0.02 1.56 16 38 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.15 2.72 7.74 -2.91 -0.02 2.70 16 Total: -1.00 -67.20 335.48 -0.15 -67.35 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.15 Total: 22.41 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.50 Total: -4.21 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -7.46 Total: -111.23 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.20 -0.15 -67.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds