Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46621 * 2 1 4 4 H 1.09003 * 109.46732 * 183.89631 * 3 2 1 5 5 C 1.50700 * 109.46921 * 303.89507 * 3 2 1 6 6 H 1.08000 * 120.00014 * 115.36829 * 5 3 2 7 7 C 1.37874 * 120.00191 * 295.35842 * 5 3 2 8 8 N 1.31515 * 120.00080 * 354.19681 * 7 5 3 9 9 Si 1.86798 * 119.99986 * 174.19347 * 7 5 3 10 10 H 1.48507 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47560 * 300.00204 * 9 7 5 12 12 H 1.48503 * 109.47387 * 60.00613 * 9 7 5 13 13 N 1.46896 * 109.47438 * 63.89652 * 3 2 1 14 14 C 1.46899 * 110.99857 * 80.80464 * 13 3 2 15 15 C 1.53001 * 109.46906 * 184.83811 * 14 13 3 16 16 N 1.46504 * 109.47179 * 179.97438 * 15 14 13 17 17 C 1.34774 * 120.00129 * 179.97438 * 16 15 14 18 18 O 1.21511 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.48152 * 119.99925 * 179.97438 * 17 16 15 20 20 C 1.39815 * 120.92127 * 359.72384 * 19 17 16 21 21 C 1.38157 * 118.99992 * 179.79454 * 20 19 17 22 22 N 1.31809 * 120.89479 * 0.48861 * 21 20 19 23 23 C 1.31812 * 122.05110 * 359.73692 * 22 21 20 24 24 C 1.38158 * 120.89815 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.47362 * 64.87330 * 1 2 3 26 26 H 1.08999 * 109.46972 * 184.86947 * 1 2 3 27 27 H 1.09003 * 109.47697 * 304.86666 * 1 2 3 28 28 H 1.08994 * 109.47255 * 240.00041 * 2 1 3 29 29 H 1.08996 * 109.47241 * 119.99564 * 2 1 3 30 30 H 0.97001 * 120.00049 * 354.16763 * 8 7 5 31 31 H 1.00898 * 111.00085 * 316.85358 * 13 3 2 32 32 H 1.09003 * 109.47152 * 304.83386 * 14 13 3 33 33 H 1.09001 * 109.47657 * 64.83792 * 14 13 3 34 34 H 1.09003 * 109.47527 * 299.99386 * 15 14 13 35 35 H 1.09002 * 109.47620 * 59.99959 * 15 14 13 36 36 H 0.97003 * 119.99562 * 0.02562 * 16 15 14 37 37 H 1.08001 * 120.49994 * 359.97438 * 20 19 17 38 38 H 1.07991 * 119.54981 * 180.22346 * 21 20 19 39 39 H 1.07998 * 119.55709 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.50356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1277 1.4434 -0.0698 5 6 1.4602 2.1802 -1.1794 6 1 0.7872 3.0097 -1.0198 7 6 1.7891 1.7963 -2.4621 8 7 2.6949 0.8630 -2.6573 9 14 0.9481 2.6017 -3.9227 10 1 1.4745 2.0160 -5.1818 11 1 -0.5160 2.3670 -3.8423 12 1 1.2170 4.0621 -3.9054 13 7 1.6286 2.1074 1.2437 14 6 2.5282 1.7564 2.3506 15 6 2.0007 2.3681 3.6500 16 7 2.8976 2.0175 4.7541 17 6 2.6310 2.4504 6.0023 18 8 1.6465 3.1310 6.2120 19 6 3.5377 2.0954 7.1189 20 6 4.6720 1.3078 6.9007 21 6 5.4926 1.0043 7.9699 22 7 5.2125 1.4384 9.1826 23 6 4.1514 2.1793 9.4326 24 6 3.2795 2.5341 8.4212 25 1 -0.3634 0.4364 -0.9305 26 1 -0.3633 -1.0240 0.0872 27 1 -0.3634 0.5875 0.8432 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.1921 0.5048 -1.9054 31 1 0.6709 1.8865 1.4721 32 1 2.5739 0.6720 2.4518 33 1 3.5259 2.1445 2.1451 34 1 1.9551 3.4524 3.5489 35 1 1.0031 1.9800 3.8556 36 1 3.6837 1.4745 4.5866 37 1 4.9049 0.9445 5.9106 38 1 6.3730 0.3996 7.8108 39 1 3.9607 2.5136 10.4417 40 1 2.4118 3.1410 8.6333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = -29.234662 kcal Electronic energy + Delta-G solvation = -20551.166342 eV Core-core repulsion = 17364.573041 eV Total energy + Delta-G solvation = -3186.593301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66669 -40.18979 -38.81532 -36.49256 -34.61584 -33.72502 -32.55970 -32.18176 -29.59993 -27.31975 -25.69737 -25.33649 -24.45202 -23.27271 -21.97162 -21.35962 -19.45420 -18.76425 -17.78254 -17.08897 -16.74979 -16.59459 -16.43134 -16.24718 -15.70047 -15.52647 -15.40517 -14.91170 -14.86801 -14.53935 -14.48287 -14.29972 -13.54614 -13.15661 -12.96841 -12.77691 -12.64652 -12.59191 -12.03831 -11.92814 -11.88392 -11.67383 -11.53743 -11.05433 -10.63434 -10.56876 -10.39669 -10.30221 -10.23044 -9.10951 -8.49547 -6.19902 -0.40465 0.06336 1.57146 1.62987 1.71746 1.81589 1.83196 2.61098 2.80857 3.26032 3.34806 3.48294 3.60701 3.74595 3.89819 3.90882 4.03290 4.07643 4.30786 4.35516 4.43175 4.50324 4.53871 4.73625 4.78521 4.81790 4.83921 4.95729 5.00441 5.09489 5.17646 5.22978 5.42676 5.53074 5.57539 5.95292 6.20551 6.29044 6.53635 6.69320 6.78794 6.86667 6.94679 7.54580 8.86852 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.002801 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.685827 B = 9993.332458 C =10193.669008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 C 0.210 3.790 4 H 0.000 1.000 5 C -0.578 4.578 6 H 0.044 0.956 7 C -0.026 4.026 8 N -0.940 5.940 9 Si 1.105 2.895 10 H -0.288 1.288 11 H -0.273 1.273 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.055 3.945 15 C 0.133 3.867 16 N -0.705 5.705 17 C 0.555 3.445 18 O -0.571 6.571 19 C -0.102 4.102 20 C -0.135 4.135 21 C 0.095 3.905 22 N -0.490 5.490 23 C 0.096 3.904 24 C -0.126 4.126 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.336 0.664 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.165 0.835 38 H 0.192 0.808 39 H 0.189 0.811 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -1.572 20.627 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.185 4.185 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.617 4.617 6 H 0.062 0.938 7 C -0.224 4.224 8 N -0.578 5.578 9 Si 0.928 3.072 10 H -0.214 1.214 11 H -0.198 1.198 12 H -0.203 1.203 13 N -0.315 5.315 14 C -0.075 4.075 15 C 0.009 3.991 16 N -0.358 5.358 17 C 0.342 3.658 18 O -0.451 6.451 19 C -0.113 4.113 20 C -0.155 4.155 21 C -0.062 4.062 22 N -0.200 5.200 23 C -0.061 4.061 24 C -0.146 4.146 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.253 0.747 37 H 0.183 0.817 38 H 0.209 0.791 39 H 0.206 0.794 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.028 -0.755 19.630 20.053 hybrid contribution -0.296 -0.837 0.760 1.169 sum 3.731 -1.592 20.390 20.790 Atomic orbital electron populations 1.21476 0.95270 0.99948 1.01323 1.22080 0.97414 0.99806 0.99185 1.19087 0.93606 0.89459 0.87772 0.98226 1.22104 1.29842 1.17384 0.92337 0.93754 1.26873 0.96675 0.95875 1.02964 1.70908 1.23725 1.28191 1.35002 0.83073 0.75695 0.75381 0.73025 1.21396 1.19839 1.20297 1.60590 1.05950 1.62528 1.02451 1.22026 0.97756 0.97940 0.89797 1.21144 0.93132 1.00432 0.84392 1.45694 1.29258 1.54011 1.06787 1.18549 0.84798 0.79246 0.83168 1.90772 1.29966 1.39862 1.84464 1.20354 0.96491 1.00382 0.94104 1.22652 0.93410 0.96698 1.02768 1.23310 0.99416 0.96612 0.86827 1.67642 1.18549 1.09452 1.24360 1.23211 0.88994 0.93273 1.00573 1.22459 1.01090 0.99015 0.92062 0.93910 0.93052 0.92840 0.94120 0.93817 0.93074 0.84397 0.94306 0.91218 0.91669 0.91693 0.74664 0.81708 0.79099 0.79449 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 9.38 71.98 0.68 -4.07 16 2 C -0.14 -6.20 5.46 30.60 0.17 -6.03 16 3 C 0.21 9.81 1.95 44.17 0.09 9.90 16 4 H 0.00 -0.01 7.31 -2.39 -0.02 -0.02 16 5 C -0.58 -30.91 7.42 25.60 0.19 -30.72 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 7 C -0.03 -1.41 5.27 84.65 0.45 -0.96 16 8 N -0.94 -54.79 12.88 21.45 0.28 -54.51 16 9 Si 1.10 49.43 29.91 68.60 2.05 51.48 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.68 -26.58 6.25 -495.45 -3.10 -29.68 16 14 C 0.05 1.64 5.62 86.30 0.48 2.13 16 15 C 0.13 3.56 5.88 86.38 0.51 4.07 16 16 N -0.70 -15.16 5.51 -465.67 -2.57 -17.73 16 17 C 0.56 13.75 7.80 86.88 0.68 14.43 16 18 O -0.57 -18.73 16.45 -3.75 -0.06 -18.79 16 19 C -0.10 -1.96 5.91 -19.88 -0.12 -2.08 16 20 C -0.14 -1.80 9.62 22.63 0.22 -1.59 16 21 C 0.09 1.23 11.17 84.68 0.95 2.17 16 22 N -0.49 -8.17 10.33 -196.00 -2.03 -10.19 16 23 C 0.10 1.43 11.17 84.68 0.95 2.37 16 24 C -0.13 -2.24 9.68 22.63 0.22 -2.02 16 25 H 0.04 1.86 7.30 -2.38 -0.02 1.85 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.86 6.24 -2.39 -0.01 1.84 16 28 H 0.04 1.98 6.27 -2.39 -0.01 1.97 16 29 H 0.04 1.63 7.04 -2.39 -0.02 1.62 16 30 H 0.26 15.09 6.04 -92.71 -0.56 14.53 16 31 H 0.34 12.41 6.44 -89.70 -0.58 11.83 16 32 H 0.04 1.09 7.00 -2.39 -0.02 1.07 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.42 6.29 6.62 -92.71 -0.61 5.67 16 37 H 0.17 1.24 6.54 -2.91 -0.02 1.22 16 38 H 0.19 1.23 8.06 -2.92 -0.02 1.21 16 39 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.15 2.59 7.74 -2.91 -0.02 2.57 16 Total: -1.00 -69.16 330.04 0.10 -69.06 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.08 Total: 22.76 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.45 Total: -12.39 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -7.41 Total: -112.12 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Total: -69.16 0.10 -69.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.824 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds