Wall clock time and date at job start Mon Mar 30 2020 02:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46918 * 2 1 4 4 H 1.09004 * 109.46719 * 303.18877 * 3 2 1 5 5 C 1.50702 * 109.46869 * 183.18912 * 3 2 1 6 6 H 1.08001 * 119.99862 * 239.99622 * 5 3 2 7 7 C 1.37880 * 119.99771 * 59.99668 * 5 3 2 8 8 N 1.31511 * 120.00286 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99546 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47117 * 59.99920 * 9 7 5 11 11 H 1.48498 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46906 * 299.99896 * 9 7 5 13 13 N 1.46893 * 109.47477 * 63.18531 * 3 2 1 14 14 C 1.46902 * 111.00121 * 220.76032 * 13 3 2 15 15 C 1.50707 * 112.84812 * 160.91533 * 14 13 3 16 16 C 1.38220 * 120.01146 * 5.00233 * 15 14 13 17 17 C 1.38226 * 120.02366 * 179.72021 * 16 15 14 18 18 C 1.38267 * 120.04769 * 0.56101 * 17 16 15 19 19 C 1.38173 * 120.02976 * 359.72029 * 18 17 16 20 20 C 1.38432 * 120.00964 * 185.28341 * 15 14 13 21 21 F 1.35102 * 120.02978 * 0.02562 * 20 15 14 22 22 C 1.53774 * 113.61237 * 29.60847 * 14 13 3 23 23 C 1.53781 * 87.08303 * 270.88085 * 22 14 13 24 24 C 1.53774 * 113.61441 * 292.10897 * 14 13 3 25 25 H 1.09001 * 109.47021 * 64.63141 * 1 2 3 26 26 H 1.09005 * 109.46785 * 184.62955 * 1 2 3 27 27 H 1.09001 * 109.46852 * 304.62763 * 1 2 3 28 28 H 1.08993 * 109.46654 * 239.99422 * 2 1 3 29 29 H 1.08996 * 109.46659 * 119.99697 * 2 1 3 30 30 H 0.97002 * 119.99594 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00032 * 96.80640 * 13 3 2 32 32 H 1.08002 * 119.98742 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.97304 * 180.27937 * 17 16 15 34 34 H 1.08003 * 119.98743 * 179.74456 * 18 17 16 35 35 H 1.07997 * 120.01934 * 180.02562 * 19 18 17 36 36 H 1.09001 * 113.62046 * 25.43366 * 22 14 13 37 37 H 1.09010 * 113.61192 * 156.33167 * 22 14 13 38 38 H 1.08993 * 113.61584 * 220.02257 * 23 22 14 39 39 H 1.09002 * 113.60979 * 89.11486 * 23 22 14 40 40 H 1.09003 * 113.61802 * 203.66640 * 24 14 13 41 41 H 1.09005 * 113.61663 * 334.56527 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6307 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0790 6 1 4.1269 1.8961 0.7100 7 6 4.1789 0.8657 -1.1588 8 7 3.4702 0.3147 -2.1199 9 14 6.0444 0.8660 -1.2563 10 1 6.6014 0.1435 -0.0846 11 1 6.4748 0.1883 -2.5056 12 1 6.5398 2.2659 -1.2560 13 7 1.6143 2.1124 1.2360 14 6 1.1819 3.4902 0.9660 15 6 0.3259 4.0613 2.0670 16 6 0.1141 3.3364 3.2246 17 6 -0.6663 3.8624 4.2370 18 6 -1.2454 5.1091 4.0882 19 6 -1.0398 5.8332 2.9294 20 6 -0.2533 5.3096 1.9168 21 9 -0.0520 6.0164 0.7832 22 6 0.5917 3.6861 -0.4404 23 6 2.0236 3.9861 -0.9141 24 6 2.3260 4.4205 0.5298 25 1 -0.3633 0.4403 -0.9286 26 1 -0.3633 -1.0244 0.0830 27 1 -0.3633 0.5840 0.8456 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9163 -0.0919 -2.8792 31 1 2.3474 2.0928 1.9290 32 1 0.5625 2.3607 3.3402 33 1 -0.8276 3.2972 5.1430 34 1 -1.8583 5.5174 4.8781 35 1 -1.4918 6.8071 2.8135 36 1 0.1718 2.7758 -0.8685 37 1 -0.0814 4.5402 -0.5164 38 1 2.0831 4.8001 -1.6364 39 1 2.5745 3.0993 -1.2277 40 1 2.1273 5.4754 0.7191 41 1 3.3065 4.1031 0.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:07 Heat of formation + Delta-G solvation = 19.840221 kcal Electronic energy + Delta-G solvation = -22758.550554 eV Core-core repulsion = 19554.165338 eV Total energy + Delta-G solvation = -3204.385216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.72835 -39.96316 -38.10453 -34.41988 -31.85363 -31.22365 -30.18635 -29.82924 -26.64989 -25.19156 -24.17640 -22.77687 -22.13527 -21.14085 -19.32140 -18.58376 -17.33857 -16.64885 -16.10659 -15.62049 -15.41196 -14.90366 -14.66670 -14.22540 -13.77941 -13.68384 -13.10783 -12.84839 -12.65398 -12.37447 -12.04669 -11.85749 -11.73910 -11.54149 -11.17635 -11.08210 -10.94566 -10.79773 -10.65417 -10.16716 -10.02952 -9.91152 -9.67974 -9.50708 -9.18043 -8.83936 -8.68046 -8.37843 -8.28729 -7.29015 -6.03959 -4.14012 1.37064 1.45071 3.26840 3.32438 3.35087 3.80443 4.36655 4.49385 4.87056 4.95594 5.15202 5.18456 5.28270 5.36330 5.42054 5.52850 5.65733 5.70625 5.99550 6.17829 6.25471 6.31514 6.38647 6.46035 6.47963 6.52853 6.63361 6.65587 6.70790 6.77102 6.79369 6.97523 7.09964 7.13512 7.19415 7.42244 7.48587 7.63561 7.77146 8.06443 8.11768 8.32640 8.62795 8.97726 9.51658 10.96994 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.005877 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.070966 B = 4762.950258 C = 5115.874159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.190 3.810 4 H 0.066 0.934 5 C -0.536 4.536 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.661 5.661 14 C 0.138 3.862 15 C -0.078 4.078 16 C -0.072 4.072 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.161 4.161 20 C 0.096 3.904 21 F -0.136 7.136 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.157 4.157 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.333 0.667 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.139 0.861 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 7.511 8.514 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.083 3.917 4 H 0.084 0.916 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.290 5.290 14 C 0.045 3.955 15 C -0.080 4.080 16 C -0.090 4.090 17 C -0.155 4.155 18 C -0.125 4.125 19 C -0.180 4.180 20 C 0.076 3.924 21 F -0.115 7.115 22 C -0.178 4.178 23 C -0.191 4.191 24 C -0.196 4.196 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.156 0.844 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.206 7.155 8.253 13.662 hybrid contribution 1.947 0.593 -0.390 2.072 sum -6.259 7.748 7.863 12.690 Atomic orbital electron populations 1.21739 0.99282 0.98455 1.00233 1.21529 0.91819 0.99516 1.01551 1.19808 0.92981 0.91230 0.87677 0.91642 1.21712 0.92193 1.37489 1.06122 0.92838 1.24888 0.97796 0.94992 0.95714 1.69863 1.34997 1.37549 1.09706 0.86757 0.86300 0.78208 0.77352 1.20360 1.21305 1.20369 1.60689 1.43396 1.10795 1.14124 1.20652 0.93892 0.90305 0.90614 1.20017 0.98499 0.92420 0.97066 1.21124 0.96405 1.00082 0.91369 1.21232 0.98787 0.95983 0.99469 1.20885 0.99921 0.94924 0.96800 1.21013 1.01446 1.01381 0.94192 1.17559 1.00164 0.91073 0.83604 1.91417 1.93558 1.77922 1.48560 1.23339 0.97827 1.01836 0.94781 1.23490 0.96685 1.03540 0.95409 1.23556 0.99065 0.98575 0.98410 0.94742 0.95737 0.93123 0.89335 0.95207 0.92771 0.84894 0.83882 0.85867 0.85797 0.85437 0.90518 0.90157 0.93524 0.84382 0.91586 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.84 37.16 0.37 -2.45 16 2 C -0.11 -2.43 5.44 -26.73 -0.15 -2.58 16 3 C 0.19 4.32 1.13 -68.87 -0.08 4.24 16 4 H 0.07 1.60 3.23 -51.93 -0.17 1.43 16 5 C -0.54 -13.37 6.41 -34.44 -0.22 -13.60 16 6 H 0.05 1.34 7.36 -52.49 -0.39 0.96 16 7 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 8 N -0.88 -23.71 11.30 55.43 0.63 -23.08 16 9 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.66 -13.00 4.28 -94.60 -0.40 -13.40 16 14 C 0.14 2.54 1.61 -131.94 -0.21 2.33 16 15 C -0.08 -1.29 5.30 -104.55 -0.55 -1.84 16 16 C -0.07 -1.05 9.43 -39.59 -0.37 -1.43 16 17 C -0.14 -1.66 10.04 -39.57 -0.40 -2.06 16 18 C -0.11 -1.22 10.04 -39.59 -0.40 -1.62 16 19 C -0.16 -2.07 10.03 -39.51 -0.40 -2.46 16 20 C 0.10 1.48 6.68 -39.42 -0.26 1.22 16 21 F -0.14 -2.22 12.89 2.25 0.03 -2.19 16 22 C -0.14 -2.69 6.42 -25.92 -0.17 -2.86 16 23 C -0.15 -3.13 7.20 -25.92 -0.19 -3.31 16 24 C -0.16 -2.96 6.71 -25.92 -0.17 -3.14 16 25 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.99 7.57 -51.93 -0.39 0.60 16 28 H 0.09 2.28 5.99 -51.93 -0.31 1.97 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.56 8.02 -39.29 -0.32 6.24 16 32 H 0.14 2.11 7.04 -52.49 -0.37 1.74 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.08 1.58 6.70 -51.93 -0.35 1.23 16 37 H 0.08 1.45 5.60 -51.92 -0.29 1.16 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.14 3.26 4.15 -51.93 -0.22 3.04 16 40 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 41 H 0.07 1.39 7.78 -51.93 -0.40 0.99 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -25.69 315.90 -8.94 -34.63 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.63 Total: 11.69 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.29 Total: -27.86 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.22 Total: -36.48 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.69 -8.94 -34.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.469 kcal (2) G-P(sol) polarization free energy of solvation -25.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds