Wall clock time and date at job start Mon Mar 30 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 H 1.09002 * 109.47484 * 39.40070 * 3 2 1 5 5 C 1.50702 * 109.47387 * 159.40541 * 3 2 1 6 6 H 1.08000 * 120.00306 * 119.99179 * 5 3 2 7 7 C 1.37869 * 119.99626 * 299.99777 * 5 3 2 8 8 N 1.31514 * 120.00397 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46940 * 59.99396 * 9 7 5 11 11 H 1.48490 * 109.47567 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46467 * 299.99836 * 9 7 5 13 13 N 1.46903 * 109.46803 * 279.40170 * 3 2 1 14 14 C 1.46903 * 111.00338 * 114.34573 * 13 3 2 15 15 C 1.50707 * 112.84569 * 66.38284 * 14 13 3 16 16 C 1.38213 * 120.01481 * 357.80166 * 15 14 13 17 17 C 1.38223 * 120.02852 * 179.97438 * 16 15 14 18 18 C 1.38272 * 120.04844 * 0.02562 * 17 16 15 19 19 C 1.38182 * 120.02526 * 359.97438 * 18 17 16 20 20 C 1.38439 * 120.01032 * 177.78110 * 15 14 13 21 21 F 1.35108 * 120.02490 * 0.02562 * 20 15 14 22 22 C 1.53778 * 113.69426 * 197.65262 * 14 13 3 23 23 C 1.53784 * 87.07768 * 89.12672 * 22 14 13 24 24 C 1.53779 * 87.08350 * 25.43514 * 23 22 14 25 25 H 1.09004 * 109.47049 * 186.93117 * 1 2 3 26 26 H 1.09003 * 109.47151 * 306.92910 * 1 2 3 27 27 H 1.08998 * 109.47027 * 66.93127 * 1 2 3 28 28 H 1.08993 * 109.47280 * 239.99540 * 2 1 3 29 29 H 1.09002 * 109.47237 * 119.99396 * 2 1 3 30 30 H 0.97004 * 120.00737 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99949 * 350.39372 * 13 3 2 32 32 H 1.08004 * 119.98423 * 359.97428 * 16 15 14 33 33 H 1.07992 * 119.97901 * 180.02562 * 17 16 15 34 34 H 1.07995 * 119.98585 * 180.27346 * 18 17 16 35 35 H 1.07997 * 120.01158 * 179.97438 * 19 18 17 36 36 H 1.08998 * 113.61510 * 203.67322 * 22 14 13 37 37 H 1.08996 * 113.61489 * 334.58289 * 22 14 13 38 38 H 1.08994 * 113.61414 * 270.87710 * 23 22 14 39 39 H 1.09004 * 113.68787 * 139.99481 * 23 22 14 40 40 H 1.08997 * 113.61326 * 220.02177 * 24 23 22 41 41 H 1.08997 * 113.69381 * 89.12510 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4124 2.0498 0.6523 5 6 3.4613 1.4729 0.4998 6 1 4.2487 1.8530 -0.1342 7 6 3.7566 1.0153 1.7664 8 7 2.7978 0.5527 2.5386 9 14 5.5183 1.0535 2.3863 10 1 6.0127 2.4537 2.3863 11 1 5.5692 0.5100 3.7672 12 1 6.3738 0.2265 1.4975 13 7 1.9898 1.9795 -1.3664 14 6 1.0163 3.0752 -1.4662 15 6 1.4191 4.2900 -0.6705 16 6 2.5762 4.2691 0.0851 17 6 2.9462 5.3834 0.8145 18 6 2.1591 6.5200 0.7896 19 6 1.0019 6.5432 0.0348 20 6 0.6305 5.4276 -0.6967 21 9 -0.5008 5.4491 -1.4349 22 6 0.5932 3.3964 -2.9093 23 6 -0.5211 2.3515 -2.7316 24 6 -0.4362 2.6328 -1.2222 25 1 -0.3633 -1.0202 0.1240 26 1 -0.3633 0.6175 0.8215 27 1 -0.3633 0.4027 -0.9455 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0054 0.2311 3.4299 31 1 1.7841 1.2512 -2.0339 32 1 3.1915 3.3818 0.1057 33 1 3.8507 5.3664 1.4044 34 1 2.4515 7.3915 1.3564 35 1 0.3871 7.4309 0.0158 36 1 0.2219 4.4129 -3.0395 37 1 1.3379 3.1179 -3.6549 38 1 -0.2193 1.3405 -3.0051 39 1 -1.4715 2.6447 -3.1776 40 1 -0.5223 1.7380 -0.6058 41 1 -1.0885 3.4402 -0.8897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:13 Heat of formation + Delta-G solvation = 21.695631 kcal Electronic energy + Delta-G solvation = -23066.588263 eV Core-core repulsion = 19862.283504 eV Total energy + Delta-G solvation = -3204.304759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.55010 -39.87353 -37.63672 -35.11738 -31.91444 -31.32146 -29.82491 -29.67949 -26.61119 -25.27720 -24.24355 -22.90683 -21.92976 -21.08096 -19.96128 -18.56055 -16.94382 -16.35365 -15.99399 -15.44400 -15.27168 -14.84111 -14.70679 -14.40933 -13.76776 -13.50749 -13.07157 -12.94411 -12.64356 -12.30867 -12.21244 -11.85466 -11.63358 -11.48251 -11.34467 -11.31425 -10.91762 -10.77756 -10.53849 -10.47022 -10.02711 -9.90302 -9.73956 -9.55174 -9.39494 -9.16095 -8.39169 -8.22695 -8.07084 -7.27450 -6.05910 -4.10268 1.70638 1.86973 3.28552 3.34172 3.36823 4.19344 4.35701 4.73968 5.02860 5.05212 5.12620 5.16600 5.20867 5.32438 5.49410 5.65703 5.72723 5.92395 6.03436 6.07191 6.08926 6.13374 6.19532 6.28807 6.34408 6.47601 6.52808 6.59689 6.64221 6.71849 6.77421 6.85613 6.97020 7.11131 7.23507 7.28152 7.40070 7.67638 7.72062 7.81760 8.24252 8.48244 8.56167 8.96170 9.53086 10.97910 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.008468 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.675693 B = 3305.646310 C = 4542.763414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.501 4.501 6 H 0.067 0.933 7 C 0.061 3.939 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.660 5.660 14 C 0.146 3.854 15 C -0.090 4.090 16 C -0.073 4.073 17 C -0.139 4.139 18 C -0.106 4.106 19 C -0.174 4.174 20 C 0.088 3.912 21 F -0.145 7.145 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.209 4.209 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.262 0.738 31 H 0.329 0.671 32 H 0.197 0.803 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 6.283 -5.639 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.539 4.539 6 H 0.085 0.915 7 C -0.141 4.141 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.289 5.289 14 C 0.054 3.946 15 C -0.091 4.091 16 C -0.090 4.090 17 C -0.157 4.157 18 C -0.124 4.124 19 C -0.193 4.193 20 C 0.069 3.931 21 F -0.123 7.123 22 C -0.175 4.175 23 C -0.176 4.176 24 C -0.247 4.247 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.213 0.787 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.738 6.614 -5.379 9.308 hybrid contribution -0.271 -0.371 0.451 0.644 sum -4.010 6.242 -4.928 8.907 Atomic orbital electron populations 1.22242 0.99520 0.99623 1.00325 1.22138 0.92093 1.01309 1.02390 1.19346 0.96387 0.90088 0.83453 0.94940 1.21117 0.93452 1.40637 0.98699 0.91467 1.24968 0.97011 0.95277 0.96878 1.69895 1.31687 1.41673 1.09042 0.86678 0.85167 0.78557 0.77780 1.20096 1.21457 1.20246 1.60700 1.47185 1.11923 1.09134 1.20641 0.89743 0.90923 0.93341 1.19739 0.95883 0.93400 1.00111 1.22828 0.95432 1.00567 0.90145 1.21336 1.00352 0.93456 1.00534 1.20928 0.94349 0.98487 0.98622 1.20851 0.99646 0.97659 1.01162 1.17576 0.84400 0.95604 0.95556 1.91367 1.49059 1.96926 1.74983 1.23231 0.97907 0.99924 0.96473 1.22726 0.98735 0.98892 0.97258 1.24573 0.98526 1.04300 0.97321 0.94692 0.93046 0.92913 0.94881 0.88212 0.92842 0.85242 0.78676 0.86049 0.86225 0.85933 0.89428 0.91299 0.90628 0.92045 0.87321 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.20 37.16 0.30 -2.76 16 2 C -0.14 -3.08 5.23 -26.73 -0.14 -3.22 16 3 C 0.21 4.87 0.94 -68.86 -0.06 4.81 16 4 H 0.03 0.84 6.15 -51.93 -0.32 0.52 16 5 C -0.50 -12.49 6.33 -34.44 -0.22 -12.71 16 6 H 0.07 1.70 7.38 -52.49 -0.39 1.31 16 7 C 0.06 1.56 5.17 -17.82 -0.09 1.47 16 8 N -0.88 -23.60 11.39 55.43 0.63 -22.97 16 9 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.66 -13.18 5.79 -94.58 -0.55 -13.73 16 14 C 0.15 2.71 0.94 -131.94 -0.12 2.58 16 15 C -0.09 -1.75 4.93 -104.55 -0.52 -2.27 16 16 C -0.07 -1.49 8.43 -39.60 -0.33 -1.83 16 17 C -0.14 -2.48 10.05 -39.57 -0.40 -2.88 16 18 C -0.11 -1.65 10.04 -39.59 -0.40 -2.05 16 19 C -0.17 -2.78 10.03 -39.51 -0.40 -3.17 16 20 C 0.09 1.57 6.66 -39.42 -0.26 1.31 16 21 F -0.14 -2.48 12.87 2.25 0.03 -2.45 16 22 C -0.14 -2.21 7.00 -25.92 -0.18 -2.39 16 23 C -0.14 -2.08 7.46 -25.92 -0.19 -2.27 16 24 C -0.21 -3.65 6.18 -25.92 -0.16 -3.81 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.04 7.48 -51.93 -0.39 0.65 16 27 H 0.05 0.91 5.08 -51.93 -0.26 0.65 16 28 H 0.03 0.69 7.69 -51.93 -0.40 0.29 16 29 H 0.10 2.50 5.82 -51.93 -0.30 2.20 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.33 6.18 7.01 -39.29 -0.28 5.90 16 32 H 0.20 4.44 3.04 -52.48 -0.16 4.28 16 33 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.40 5.86 -51.93 -0.30 1.10 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.08 7.45 -51.93 -0.39 0.70 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.99 2.50 -51.93 -0.13 1.86 16 41 H 0.08 1.37 6.26 -51.93 -0.33 1.04 16 LS Contribution 307.13 15.07 4.63 4.63 Total: -1.00 -25.59 307.13 -8.76 -34.35 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.31 Total: 14.22 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -3.17 Total: -29.19 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.08 Total: -36.70 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.59 -8.76 -34.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal (2) G-P(sol) polarization free energy of solvation -25.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds