Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 H 1.09002 * 109.47484 * 39.40070 * 3 2 1 5 5 C 1.50702 * 109.47387 * 159.40541 * 3 2 1 6 6 H 1.08000 * 120.00306 * 119.99179 * 5 3 2 7 7 C 1.37869 * 119.99626 * 299.99777 * 5 3 2 8 8 N 1.31514 * 120.00397 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46940 * 59.99396 * 9 7 5 11 11 H 1.48490 * 109.47567 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46467 * 299.99836 * 9 7 5 13 13 N 1.46903 * 109.46803 * 279.40170 * 3 2 1 14 14 C 1.46903 * 111.00338 * 114.34573 * 13 3 2 15 15 C 1.50707 * 112.84569 * 66.38284 * 14 13 3 16 16 C 1.38213 * 120.01481 * 357.80166 * 15 14 13 17 17 C 1.38223 * 120.02852 * 179.97438 * 16 15 14 18 18 C 1.38272 * 120.04844 * 0.02562 * 17 16 15 19 19 C 1.38182 * 120.02526 * 359.97438 * 18 17 16 20 20 C 1.38439 * 120.01032 * 177.78110 * 15 14 13 21 21 F 1.35108 * 120.02490 * 0.02562 * 20 15 14 22 22 C 1.53778 * 113.69426 * 197.65262 * 14 13 3 23 23 C 1.53784 * 87.07768 * 89.12672 * 22 14 13 24 24 C 1.53779 * 87.08350 * 25.43514 * 23 22 14 25 25 H 1.09004 * 109.47049 * 186.93117 * 1 2 3 26 26 H 1.09003 * 109.47151 * 306.92910 * 1 2 3 27 27 H 1.08998 * 109.47027 * 66.93127 * 1 2 3 28 28 H 1.08993 * 109.47280 * 239.99540 * 2 1 3 29 29 H 1.09002 * 109.47237 * 119.99396 * 2 1 3 30 30 H 0.97004 * 120.00737 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99949 * 350.39372 * 13 3 2 32 32 H 1.08004 * 119.98423 * 359.97428 * 16 15 14 33 33 H 1.07992 * 119.97901 * 180.02562 * 17 16 15 34 34 H 1.07995 * 119.98585 * 180.27346 * 18 17 16 35 35 H 1.07997 * 120.01158 * 179.97438 * 19 18 17 36 36 H 1.08998 * 113.61510 * 203.67322 * 22 14 13 37 37 H 1.08996 * 113.61489 * 334.58289 * 22 14 13 38 38 H 1.08994 * 113.61414 * 270.87710 * 23 22 14 39 39 H 1.09004 * 113.68787 * 139.99481 * 23 22 14 40 40 H 1.08997 * 113.61326 * 220.02177 * 24 23 22 41 41 H 1.08997 * 113.69381 * 89.12510 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4124 2.0498 0.6523 5 6 3.4613 1.4729 0.4998 6 1 4.2487 1.8530 -0.1342 7 6 3.7566 1.0153 1.7664 8 7 2.7978 0.5527 2.5386 9 14 5.5183 1.0535 2.3863 10 1 6.0127 2.4537 2.3863 11 1 5.5692 0.5100 3.7672 12 1 6.3738 0.2265 1.4975 13 7 1.9898 1.9795 -1.3664 14 6 1.0163 3.0752 -1.4662 15 6 1.4191 4.2900 -0.6705 16 6 2.5762 4.2691 0.0851 17 6 2.9462 5.3834 0.8145 18 6 2.1591 6.5200 0.7896 19 6 1.0019 6.5432 0.0348 20 6 0.6305 5.4276 -0.6967 21 9 -0.5008 5.4491 -1.4349 22 6 0.5932 3.3964 -2.9093 23 6 -0.5211 2.3515 -2.7316 24 6 -0.4362 2.6328 -1.2222 25 1 -0.3633 -1.0202 0.1240 26 1 -0.3633 0.6175 0.8215 27 1 -0.3633 0.4027 -0.9455 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0054 0.2311 3.4299 31 1 1.7841 1.2512 -2.0339 32 1 3.1915 3.3818 0.1057 33 1 3.8507 5.3664 1.4044 34 1 2.4515 7.3915 1.3564 35 1 0.3871 7.4309 0.0158 36 1 0.2219 4.4129 -3.0395 37 1 1.3379 3.1179 -3.6549 38 1 -0.2193 1.3405 -3.0051 39 1 -1.4715 2.6447 -3.1776 40 1 -0.5223 1.7380 -0.6058 41 1 -1.0885 3.4402 -0.8897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 9.020751 kcal Electronic energy + Delta-G solvation = -23067.137887 eV Core-core repulsion = 19862.283504 eV Total energy + Delta-G solvation = -3204.854383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89457 -41.30262 -38.99127 -36.82071 -33.79405 -32.77823 -31.24382 -31.11719 -28.41943 -26.65041 -25.66675 -24.60358 -23.34903 -22.40886 -21.69936 -19.96739 -18.55369 -18.02854 -17.36124 -16.86992 -16.62541 -16.55324 -16.15992 -15.86269 -15.29672 -15.05214 -14.77723 -14.35806 -14.06104 -13.74917 -13.70168 -13.49610 -13.08117 -12.94260 -12.85734 -12.80684 -12.65785 -12.48515 -12.10285 -11.94657 -11.70932 -11.57210 -11.26783 -11.07447 -10.92395 -10.85874 -10.34251 -9.62572 -9.45101 -8.88958 -8.01668 -6.10551 0.33795 0.50800 1.45751 1.47183 1.53485 2.46788 2.81548 3.20791 3.39050 3.58885 3.70650 3.82053 3.87155 4.06980 4.14336 4.35069 4.41825 4.45211 4.54303 4.61427 4.69733 4.73683 4.83281 4.85725 5.01530 5.06985 5.14185 5.21045 5.24970 5.26222 5.33878 5.39506 5.42745 5.43359 5.63741 5.77159 5.82871 5.85074 5.93410 6.21790 6.40854 6.71630 6.94837 7.01110 7.55500 9.00244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.008468 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.675693 B = 3305.646310 C = 4542.763414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.232 3.768 4 H -0.001 1.001 5 C -0.501 4.501 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.134 3.866 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.150 4.150 18 C -0.096 4.096 19 C -0.167 4.167 20 C 0.077 3.923 21 F -0.141 7.141 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.211 4.211 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.258 0.742 31 H 0.336 0.664 32 H 0.169 0.831 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 7.658 -6.646 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.124 3.876 4 H 0.017 0.983 5 C -0.539 4.539 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.291 5.291 14 C 0.041 3.959 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.168 4.168 18 C -0.114 4.114 19 C -0.185 4.185 20 C 0.058 3.942 21 F -0.120 7.120 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.250 4.250 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.186 0.814 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.373 7.993 -6.406 11.138 hybrid contribution -0.078 -0.715 0.749 1.038 sum -4.451 7.279 -5.658 10.237 Atomic orbital electron populations 1.22103 0.97212 1.00376 1.00752 1.22013 0.94191 1.00405 1.01133 1.18964 0.94464 0.89932 0.84262 0.98267 1.21327 0.94396 1.39580 0.98637 0.92462 1.25553 0.99921 0.95394 0.97211 1.70019 1.33086 1.42923 1.09085 0.85853 0.81651 0.78610 0.77008 1.19541 1.21642 1.20065 1.60554 1.48514 1.12327 1.07709 1.20808 0.89762 0.90187 0.95138 1.19900 0.96081 0.94500 1.00538 1.22611 0.96371 1.00831 0.92580 1.21515 1.01179 0.93775 1.00344 1.21298 0.93422 0.98672 0.98004 1.21277 0.99713 0.97964 0.99578 1.17696 0.84485 0.95828 0.96195 1.91368 1.48744 1.96923 1.74948 1.23182 0.98296 1.00477 0.94768 1.22696 0.99314 0.99109 0.94986 1.24529 0.97716 1.03629 0.99113 0.93133 0.94914 0.90758 0.93999 0.91465 0.93253 0.84534 0.81438 0.85418 0.82328 0.82629 0.89184 0.90719 0.89635 0.90019 0.88399 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 8.20 71.98 0.59 -5.01 16 2 C -0.14 -6.17 5.23 30.59 0.16 -6.01 16 3 C 0.23 10.82 0.94 44.17 0.04 10.87 16 4 H 0.00 -0.03 6.15 -2.39 -0.01 -0.04 16 5 C -0.50 -25.79 6.33 25.60 0.16 -25.62 16 6 H 0.06 3.00 7.38 -2.91 -0.02 2.98 16 7 C 0.02 0.97 5.17 84.65 0.44 1.41 16 8 N -0.91 -50.28 11.39 21.44 0.24 -50.03 16 9 Si 0.94 42.20 29.54 68.60 2.03 44.22 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.66 -26.59 5.79 -453.15 -2.62 -29.21 16 14 C 0.13 4.88 0.94 3.31 0.00 4.89 16 15 C -0.11 -4.23 4.93 -19.82 -0.10 -4.33 16 16 C -0.11 -4.45 8.43 22.26 0.19 -4.26 16 17 C -0.15 -5.30 10.05 22.27 0.22 -5.08 16 18 C -0.10 -2.76 10.04 22.26 0.22 -2.53 16 19 C -0.17 -4.85 10.03 22.31 0.22 -4.63 16 20 C 0.08 2.65 6.66 22.37 0.15 2.80 16 21 F -0.14 -4.57 12.87 44.97 0.58 -3.99 16 22 C -0.13 -3.94 7.00 31.12 0.22 -3.72 16 23 C -0.12 -3.41 7.46 31.12 0.23 -3.17 16 24 C -0.21 -7.18 6.18 31.12 0.19 -6.99 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.03 1.34 7.48 -2.39 -0.02 1.32 16 27 H 0.07 2.48 5.08 -2.39 -0.01 2.46 16 28 H 0.04 1.75 7.69 -2.39 -0.02 1.73 16 29 H 0.07 3.48 5.82 -2.39 -0.01 3.46 16 30 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.34 12.41 7.01 -89.69 -0.63 11.78 16 32 H 0.17 7.94 3.04 -2.91 -0.01 7.93 16 33 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.09 2.70 5.86 -2.39 -0.01 2.69 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.20 7.45 -2.39 -0.02 2.18 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 3.54 2.50 -2.39 -0.01 3.53 16 41 H 0.07 2.50 6.26 -2.39 -0.01 2.48 16 Total: -1.00 -56.59 307.13 3.61 -52.98 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.43 Total: 37.42 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 2.95 Total: -51.40 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.38 Total: -79.25 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.58 Total: -3.99 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -56.59 3.61 -52.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.002 kcal (2) G-P(sol) polarization free energy of solvation -56.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds