Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46890 * 2 1 4 4 H 1.08994 * 109.47048 * 303.64453 * 3 2 1 5 5 C 1.50699 * 109.46620 * 183.64484 * 3 2 1 6 6 H 1.08004 * 119.99999 * 239.99487 * 5 3 2 7 7 C 1.37876 * 120.00397 * 60.00449 * 5 3 2 8 8 N 1.31520 * 119.99780 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00408 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47281 * 59.99260 * 9 7 5 11 11 H 1.48492 * 109.47310 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46694 * 299.99959 * 9 7 5 13 13 N 1.46894 * 109.46968 * 63.64507 * 3 2 1 14 14 C 1.46898 * 110.99732 * 220.98523 * 13 3 2 15 15 C 1.50706 * 112.90644 * 161.15232 * 14 13 3 16 16 C 1.38242 * 119.97504 * 167.42438 * 15 14 13 17 17 C 1.38203 * 120.02264 * 179.76452 * 16 15 14 18 18 C 1.38456 * 119.97727 * 0.51601 * 17 16 15 19 19 F 1.35099 * 120.02599 * 179.76268 * 18 17 16 20 20 C 1.38463 * 119.94340 * 359.74351 * 18 17 16 21 21 C 1.38192 * 119.97959 * 359.97438 * 20 18 17 22 22 C 1.53779 * 113.61877 * 292.40382 * 14 13 3 23 23 C 1.53781 * 87.08026 * 89.11623 * 22 14 13 24 24 C 1.53776 * 113.61342 * 29.90557 * 14 13 3 25 25 H 1.09000 * 109.47067 * 64.58491 * 1 2 3 26 26 H 1.08997 * 109.46969 * 184.58782 * 1 2 3 27 27 H 1.09001 * 109.46901 * 304.59299 * 1 2 3 28 28 H 1.09002 * 109.47343 * 240.00038 * 2 1 3 29 29 H 1.08992 * 109.47216 * 119.99944 * 2 1 3 30 30 H 0.97000 * 119.99537 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00206 * 344.94499 * 13 3 2 32 32 H 1.08001 * 119.98707 * 0.03225 * 16 15 14 33 33 H 1.08004 * 120.00534 * 180.25689 * 17 16 15 34 34 H 1.08004 * 120.00687 * 180.02562 * 20 18 17 35 35 H 1.08002 * 119.98903 * 179.97438 * 21 20 18 36 36 H 1.09000 * 113.61195 * 334.57013 * 22 14 13 37 37 H 1.09005 * 113.61402 * 203.66384 * 22 14 13 38 38 H 1.08997 * 113.61570 * 139.98208 * 23 22 14 39 39 H 1.08997 * 113.61328 * 270.88741 * 23 22 14 40 40 H 1.09002 * 113.61375 * 156.33250 * 24 14 13 41 41 H 1.08994 * 113.69467 * 25.43857 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6243 1.9749 -0.8555 5 6 3.5443 1.4435 -0.0903 6 1 4.1322 1.8943 0.6956 7 6 4.1701 0.8690 -1.1763 8 7 3.4542 0.3198 -2.1332 9 14 6.0347 0.8708 -1.2886 10 1 6.6016 0.1460 -0.1230 11 1 6.4557 0.1964 -2.5428 12 1 6.5292 2.2710 -1.2889 13 7 1.6235 2.1091 1.2410 14 6 1.1841 3.4858 0.9772 15 6 0.3410 4.0557 2.0888 16 6 0.0663 5.4101 2.1225 17 6 -0.7108 5.9330 3.1388 18 6 -1.2053 5.1015 4.1293 19 9 -1.9610 5.6123 5.1258 20 6 -0.9249 3.7459 4.0974 21 6 -0.1525 3.2243 3.0770 22 6 2.3197 4.4190 0.5249 23 6 1.9979 3.9838 -0.9145 24 6 0.5735 3.6803 -0.4207 25 1 -0.3633 0.4410 -0.9282 26 1 -0.3633 -1.0244 0.0822 27 1 -0.3633 0.5835 0.8460 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8946 -0.0847 -2.8970 31 1 0.9015 1.5826 1.7096 32 1 0.4554 6.0592 1.3520 33 1 -0.9287 6.9905 3.1625 34 1 -1.3105 3.0963 4.8693 35 1 0.0666 2.1671 3.0522 36 1 3.3057 4.1040 0.8662 37 1 2.1210 5.4734 0.7171 38 1 2.0452 4.7980 -1.6377 39 1 2.5465 3.0985 -1.2359 40 1 -0.1025 4.5328 -0.4871 41 1 0.1494 2.7699 -0.8440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 21.221352 kcal Electronic energy + Delta-G solvation = -22280.842052 eV Core-core repulsion = 19076.516727 eV Total energy + Delta-G solvation = -3204.325325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.82231 -40.35747 -37.97787 -34.64039 -32.14552 -31.16055 -30.67469 -29.52670 -26.74767 -25.15108 -24.04612 -23.09684 -22.43231 -21.19691 -19.58370 -18.41419 -17.68296 -16.37237 -16.13939 -15.92798 -15.52262 -14.98326 -14.72158 -14.32072 -13.87910 -13.29963 -13.21688 -13.11883 -12.76319 -12.70352 -12.61522 -12.07704 -11.80013 -11.45319 -11.38755 -11.19258 -10.91094 -10.82478 -10.67289 -10.25991 -9.97071 -9.87823 -9.72878 -9.51168 -9.17708 -9.05571 -9.00865 -8.36795 -8.32020 -7.20260 -5.98919 -4.01219 1.26138 1.33335 3.33238 3.37968 3.41624 3.68894 4.33260 4.42611 4.79442 4.91501 4.94599 5.08558 5.27906 5.29674 5.39425 5.46263 5.57336 5.69804 5.96482 5.97682 6.07486 6.10312 6.15119 6.18745 6.25456 6.31581 6.39229 6.46142 6.58763 6.67695 6.80465 6.87098 6.92846 7.00499 7.01475 7.16396 7.33828 7.57245 7.75073 7.91194 8.28315 8.41643 8.66299 9.06344 9.62401 11.05704 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.004994 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.551570 B = 5604.982376 C = 5971.249980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.191 3.809 4 H 0.051 0.949 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.659 5.659 14 C 0.138 3.862 15 C -0.058 4.058 16 C -0.089 4.089 17 C -0.153 4.153 18 C 0.080 3.920 19 F -0.147 7.147 20 C -0.151 4.151 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.155 4.155 24 C -0.166 4.166 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.321 0.679 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.140 0.860 40 H 0.067 0.933 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 7.284 6.454 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.084 3.916 4 H 0.068 0.932 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.291 5.291 14 C 0.045 3.955 15 C -0.059 4.059 16 C -0.108 4.108 17 C -0.172 4.172 18 C 0.061 3.939 19 F -0.126 7.126 20 C -0.170 4.170 21 C -0.104 4.104 22 C -0.158 4.158 23 C -0.192 4.192 24 C -0.206 4.206 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.498 7.360 6.496 12.353 hybrid contribution -0.038 -0.125 -0.255 0.286 sum -7.536 7.235 6.241 12.169 Atomic orbital electron populations 1.21916 0.99700 0.99495 0.99793 1.21964 0.91104 1.01170 1.03205 1.19886 0.95521 0.89575 0.86605 0.93152 1.21163 0.90965 1.35303 1.04839 0.92055 1.24933 0.97906 0.95716 0.95942 1.69852 1.34842 1.38996 1.09971 0.86666 0.86144 0.78164 0.77068 1.20461 1.21590 1.20376 1.60831 1.40591 0.99838 1.27812 1.20819 0.93219 0.92287 0.89144 1.20046 0.96533 0.93291 0.96024 1.20880 0.97123 0.94975 0.97772 1.21054 1.00861 1.00010 0.95291 1.17689 0.95947 0.92489 0.87823 1.91462 1.73982 1.87666 1.59498 1.21109 1.01618 0.93454 1.00834 1.20980 0.95618 1.00795 0.92960 1.22986 0.99560 0.96416 0.96810 1.23525 0.96189 1.03737 0.95745 1.23675 0.97787 1.01188 0.97930 0.93768 0.94399 0.94808 0.88062 0.94360 0.93026 0.85815 0.84956 0.85164 0.85091 0.84634 0.90047 0.91622 0.93632 0.84188 0.91486 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.80 37.16 0.36 -2.40 16 2 C -0.14 -2.99 5.24 -26.72 -0.14 -3.13 16 3 C 0.19 4.26 1.13 -68.86 -0.08 4.18 16 4 H 0.05 1.19 3.21 -51.93 -0.17 1.02 16 5 C -0.48 -12.23 6.70 -34.44 -0.23 -12.46 16 6 H 0.06 1.62 7.69 -52.48 -0.40 1.21 16 7 C 0.06 1.43 5.26 -17.82 -0.09 1.34 16 8 N -0.90 -23.88 11.30 55.43 0.63 -23.25 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.66 -12.87 6.20 -94.59 -0.59 -13.46 16 14 C 0.14 2.39 1.69 -131.94 -0.22 2.17 16 15 C -0.06 -0.88 5.28 -104.61 -0.55 -1.43 16 16 C -0.09 -1.19 8.67 -39.59 -0.34 -1.53 16 17 C -0.15 -1.92 10.03 -39.51 -0.40 -2.31 16 18 C 0.08 1.06 7.30 -39.42 -0.29 0.77 16 19 F -0.15 -1.97 17.27 2.25 0.04 -1.94 16 20 C -0.15 -1.97 10.03 -39.52 -0.40 -2.37 16 21 C -0.09 -1.22 9.30 -39.59 -0.37 -1.59 16 22 C -0.12 -2.11 6.85 -25.92 -0.18 -2.29 16 23 C -0.16 -2.92 7.20 -25.92 -0.19 -3.11 16 24 C -0.17 -2.87 6.67 -25.92 -0.17 -3.04 16 25 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 28 H 0.10 2.53 5.98 -51.93 -0.31 2.22 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.32 5.80 3.98 -39.29 -0.16 5.65 16 32 H 0.13 1.58 6.58 -52.49 -0.35 1.24 16 33 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.14 1.89 5.99 -52.49 -0.31 1.57 16 36 H 0.08 1.62 7.78 -51.93 -0.40 1.21 16 37 H 0.07 0.98 6.24 -51.93 -0.32 0.66 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.14 3.19 4.16 -51.93 -0.22 2.98 16 40 H 0.07 1.02 7.77 -51.93 -0.40 0.62 16 41 H 0.07 1.34 6.69 -51.93 -0.35 0.99 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -25.77 316.22 -8.85 -34.63 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.40 Total: 10.82 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -3.28 Total: -27.21 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.04 Total: -36.71 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.77 -8.85 -34.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -25.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds