Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46890 * 2 1 4 4 H 1.08994 * 109.47048 * 303.64453 * 3 2 1 5 5 C 1.50699 * 109.46620 * 183.64484 * 3 2 1 6 6 H 1.08004 * 119.99999 * 239.99487 * 5 3 2 7 7 C 1.37876 * 120.00397 * 60.00449 * 5 3 2 8 8 N 1.31520 * 119.99780 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00408 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47281 * 59.99260 * 9 7 5 11 11 H 1.48492 * 109.47310 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46694 * 299.99959 * 9 7 5 13 13 N 1.46894 * 109.46968 * 63.64507 * 3 2 1 14 14 C 1.46898 * 110.99732 * 220.98523 * 13 3 2 15 15 C 1.50706 * 112.90644 * 161.15232 * 14 13 3 16 16 C 1.38242 * 119.97504 * 167.42438 * 15 14 13 17 17 C 1.38203 * 120.02264 * 179.76452 * 16 15 14 18 18 C 1.38456 * 119.97727 * 0.51601 * 17 16 15 19 19 F 1.35099 * 120.02599 * 179.76268 * 18 17 16 20 20 C 1.38463 * 119.94340 * 359.74351 * 18 17 16 21 21 C 1.38192 * 119.97959 * 359.97438 * 20 18 17 22 22 C 1.53779 * 113.61877 * 292.40382 * 14 13 3 23 23 C 1.53781 * 87.08026 * 89.11623 * 22 14 13 24 24 C 1.53776 * 113.61342 * 29.90557 * 14 13 3 25 25 H 1.09000 * 109.47067 * 64.58491 * 1 2 3 26 26 H 1.08997 * 109.46969 * 184.58782 * 1 2 3 27 27 H 1.09001 * 109.46901 * 304.59299 * 1 2 3 28 28 H 1.09002 * 109.47343 * 240.00038 * 2 1 3 29 29 H 1.08992 * 109.47216 * 119.99944 * 2 1 3 30 30 H 0.97000 * 119.99537 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00206 * 344.94499 * 13 3 2 32 32 H 1.08001 * 119.98707 * 0.03225 * 16 15 14 33 33 H 1.08004 * 120.00534 * 180.25689 * 17 16 15 34 34 H 1.08004 * 120.00687 * 180.02562 * 20 18 17 35 35 H 1.08002 * 119.98903 * 179.97438 * 21 20 18 36 36 H 1.09000 * 113.61195 * 334.57013 * 22 14 13 37 37 H 1.09005 * 113.61402 * 203.66384 * 22 14 13 38 38 H 1.08997 * 113.61570 * 139.98208 * 23 22 14 39 39 H 1.08997 * 113.61328 * 270.88741 * 23 22 14 40 40 H 1.09002 * 113.61375 * 156.33250 * 24 14 13 41 41 H 1.08994 * 113.69467 * 25.43857 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6243 1.9749 -0.8555 5 6 3.5443 1.4435 -0.0903 6 1 4.1322 1.8943 0.6956 7 6 4.1701 0.8690 -1.1763 8 7 3.4542 0.3198 -2.1332 9 14 6.0347 0.8708 -1.2886 10 1 6.6016 0.1460 -0.1230 11 1 6.4557 0.1964 -2.5428 12 1 6.5292 2.2710 -1.2889 13 7 1.6235 2.1091 1.2410 14 6 1.1841 3.4858 0.9772 15 6 0.3410 4.0557 2.0888 16 6 0.0663 5.4101 2.1225 17 6 -0.7108 5.9330 3.1388 18 6 -1.2053 5.1015 4.1293 19 9 -1.9610 5.6123 5.1258 20 6 -0.9249 3.7459 4.0974 21 6 -0.1525 3.2243 3.0770 22 6 2.3197 4.4190 0.5249 23 6 1.9979 3.9838 -0.9145 24 6 0.5735 3.6803 -0.4207 25 1 -0.3633 0.4410 -0.9282 26 1 -0.3633 -1.0244 0.0822 27 1 -0.3633 0.5835 0.8460 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8946 -0.0847 -2.8970 31 1 0.9015 1.5826 1.7096 32 1 0.4554 6.0592 1.3520 33 1 -0.9287 6.9905 3.1625 34 1 -1.3105 3.0963 4.8693 35 1 0.0666 2.1671 3.0522 36 1 3.3057 4.1040 0.8662 37 1 2.1210 5.4734 0.7171 38 1 2.0452 4.7980 -1.6377 39 1 2.5465 3.0985 -1.2359 40 1 -0.1025 4.5328 -0.4871 41 1 0.1494 2.7699 -0.8440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 8.976342 kcal Electronic energy + Delta-G solvation = -22281.373036 eV Core-core repulsion = 19076.516727 eV Total energy + Delta-G solvation = -3204.856309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83850 -41.70413 -39.15868 -36.31241 -33.96425 -32.40574 -31.79944 -30.96893 -28.48763 -26.55847 -25.49642 -24.53553 -23.69350 -22.41685 -21.29384 -19.80814 -18.75582 -18.21526 -17.41145 -17.15691 -16.57733 -16.52917 -16.29271 -15.63264 -15.23730 -14.78477 -14.65896 -14.24020 -14.17435 -14.04713 -13.90915 -13.49747 -13.17972 -13.05849 -12.92846 -12.69108 -12.62069 -12.48981 -11.94416 -11.86835 -11.80257 -11.51399 -11.28045 -10.94925 -10.89181 -10.74452 -10.26602 -10.00477 -9.48751 -8.79646 -7.96866 -6.03825 0.20239 0.33492 1.44601 1.46277 1.52416 2.49495 2.63981 3.27963 3.31844 3.55879 3.78117 3.78968 3.92618 4.02836 4.08836 4.28108 4.39292 4.48989 4.51721 4.58416 4.72478 4.73672 4.85815 4.93966 5.00784 5.08870 5.12167 5.20505 5.24839 5.29401 5.33246 5.35610 5.38986 5.52842 5.59860 5.73605 5.82649 5.95267 5.96497 6.02202 6.46994 6.72788 7.02662 7.07657 7.62362 9.04929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.004994 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.551570 B = 5604.982376 C = 5971.249980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.198 3.802 4 H 0.042 0.958 5 C -0.486 4.486 6 H 0.043 0.957 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.938 3.062 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.667 5.667 14 C 0.140 3.860 15 C -0.074 4.074 16 C -0.088 4.088 17 C -0.147 4.147 18 C 0.073 3.927 19 F -0.148 7.148 20 C -0.150 4.150 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.163 4.163 24 C -0.155 4.155 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.257 0.743 31 H 0.329 0.671 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 8.889 7.541 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C 0.091 3.909 4 H 0.060 0.940 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.299 5.299 14 C 0.047 3.953 15 C -0.075 4.075 16 C -0.106 4.106 17 C -0.165 4.165 18 C 0.054 3.946 19 F -0.127 7.127 20 C -0.168 4.168 21 C -0.113 4.113 22 C -0.153 4.153 23 C -0.200 4.200 24 C -0.194 4.194 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.808 8.968 7.596 14.687 hybrid contribution 0.356 -0.579 -0.534 0.864 sum -8.452 8.390 7.062 13.846 Atomic orbital electron populations 1.21771 0.96615 1.00979 1.00345 1.21816 0.93890 1.00447 1.01088 1.19647 0.93819 0.89930 0.87535 0.94041 1.21340 0.92731 1.34402 1.04016 0.93825 1.25453 1.00838 0.95913 0.95965 1.69963 1.35721 1.39865 1.10255 0.85918 0.82727 0.77986 0.76752 1.20638 1.21473 1.20181 1.60653 1.41617 1.01132 1.26517 1.20740 0.93398 0.90816 0.90311 1.19916 0.97327 0.94362 0.95846 1.21016 0.96980 0.94219 0.98381 1.21307 0.99692 1.01238 0.94291 1.17877 0.95958 0.92769 0.88026 1.91465 1.74003 1.87650 1.59571 1.21266 1.00977 0.93847 1.00758 1.20994 0.96203 1.00752 0.93355 1.23006 0.98218 0.98344 0.95741 1.23355 0.97136 1.02576 0.96900 1.23600 0.97023 1.01390 0.97385 0.94180 0.92652 0.92990 0.91243 0.95303 0.93398 0.84890 0.83334 0.82610 0.83298 0.84870 0.93026 0.88355 0.92113 0.88416 0.88715 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.80 71.98 0.71 -4.28 16 2 C -0.13 -5.98 5.24 30.60 0.16 -5.82 16 3 C 0.20 9.04 1.13 44.17 0.05 9.09 16 4 H 0.04 2.02 3.21 -2.39 -0.01 2.01 16 5 C -0.49 -25.31 6.70 25.60 0.17 -25.13 16 6 H 0.04 2.38 7.69 -2.91 -0.02 2.35 16 7 C 0.02 0.86 5.26 84.65 0.45 1.30 16 8 N -0.92 -50.32 11.30 21.45 0.24 -50.08 16 9 Si 0.94 43.30 29.54 68.60 2.03 45.33 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.67 -26.01 6.20 -453.19 -2.81 -28.82 16 14 C 0.14 4.68 1.69 3.31 0.01 4.68 16 15 C -0.07 -2.07 5.28 -19.86 -0.10 -2.17 16 16 C -0.09 -2.04 8.67 22.26 0.19 -1.85 16 17 C -0.15 -3.12 10.03 22.31 0.22 -2.90 16 18 C 0.07 1.71 7.30 22.38 0.16 1.87 16 19 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 20 C -0.15 -3.51 10.03 22.31 0.22 -3.29 16 21 C -0.09 -2.51 9.30 22.26 0.21 -2.30 16 22 C -0.12 -3.95 6.85 31.12 0.21 -3.74 16 23 C -0.16 -6.08 7.20 31.12 0.22 -5.85 16 24 C -0.15 -5.13 6.67 31.12 0.21 -4.92 16 25 H 0.04 1.45 8.09 -2.39 -0.02 1.43 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.65 6.46 -2.39 -0.02 1.63 16 28 H 0.07 3.58 5.98 -2.39 -0.01 3.56 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.33 11.70 3.98 -89.69 -0.36 11.35 16 32 H 0.15 2.92 6.58 -2.91 -0.02 2.90 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.13 3.51 5.99 -2.91 -0.02 3.50 16 36 H 0.05 2.07 7.78 -2.39 -0.02 2.05 16 37 H 0.10 2.68 6.24 -2.38 -0.01 2.67 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 4.59 4.16 -2.39 -0.01 4.58 16 40 H 0.09 2.60 7.77 -2.39 -0.02 2.58 16 41 H 0.05 1.98 6.69 -2.39 -0.02 1.96 16 Total: -1.00 -56.36 316.22 4.02 -52.34 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.69 Total: 29.31 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 3.09 Total: -45.32 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.57 Total: -78.90 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -56.36 4.02 -52.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.316 kcal (2) G-P(sol) polarization free energy of solvation -56.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds