Wall clock time and date at job start Mon Mar 30 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47190 * 54.71202 * 3 2 1 5 5 C 1.50703 * 109.47532 * 174.71123 * 3 2 1 6 6 H 1.07993 * 120.00045 * 119.99399 * 5 3 2 7 7 C 1.37877 * 119.99642 * 300.00204 * 5 3 2 8 8 N 1.31515 * 120.00387 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47466 * 60.00145 * 9 7 5 11 11 H 1.48504 * 109.46940 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47409 * 299.99473 * 9 7 5 13 13 N 1.46898 * 109.47229 * 294.70854 * 3 2 1 14 14 C 1.46906 * 110.99891 * 107.02522 * 13 3 2 15 15 H 1.08994 * 109.25013 * 322.39618 * 14 13 3 16 16 C 1.52731 * 109.24957 * 81.85908 * 14 13 3 17 17 C 1.53330 * 108.38372 * 171.35580 * 16 14 13 18 18 C 1.52736 * 108.37918 * 290.11228 * 17 16 14 19 19 C 1.50631 * 110.59204 * 51.08293 * 18 17 16 20 20 C 1.38884 * 117.72117 * 162.51932 * 19 18 17 21 21 C 1.38156 * 120.52555 * 179.97438 * 20 19 18 22 22 F 1.35102 * 120.14690 * 179.62643 * 21 20 19 23 23 C 1.38491 * 119.71170 * 359.33042 * 21 20 19 24 24 C 1.37888 * 119.74836 * 0.70437 * 23 21 20 25 25 C 1.37680 * 122.56854 * 342.30239 * 19 18 17 26 26 H 1.08999 * 109.46794 * 301.28639 * 1 2 3 27 27 H 1.08996 * 109.46891 * 61.28837 * 1 2 3 28 28 H 1.09003 * 109.46911 * 181.28524 * 1 2 3 29 29 H 1.08999 * 109.47666 * 239.99724 * 2 1 3 30 30 H 1.09006 * 109.47241 * 119.99495 * 2 1 3 31 31 H 0.96998 * 120.00074 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00347 * 230.98246 * 13 3 2 33 33 H 1.09006 * 109.68638 * 51.63242 * 16 14 13 34 34 H 1.08998 * 109.71518 * 291.09631 * 16 14 13 35 35 H 1.08996 * 109.68731 * 170.38484 * 17 16 14 36 36 H 1.09004 * 109.67818 * 49.82766 * 17 16 14 37 37 H 1.09002 * 109.24921 * 290.80306 * 18 17 16 38 38 H 1.08998 * 109.25136 * 171.37873 * 18 17 16 39 39 H 1.07998 * 119.74093 * 359.71435 * 20 19 18 40 40 H 1.08008 * 120.12504 * 180.39807 * 23 21 20 41 41 H 1.08002 * 119.71397 * 179.74321 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5413 1.4446 0.1310 6 1 4.1502 1.8878 -0.6430 7 6 4.1374 0.8805 1.2389 8 7 3.3959 0.3411 2.1816 9 14 5.9983 0.8825 1.4009 10 1 6.4939 2.2824 1.4006 11 1 6.3851 0.2213 2.6732 12 1 6.5955 0.1458 0.2583 13 7 1.6574 2.0971 -1.2582 14 6 0.5761 3.0671 -1.0393 15 1 -0.1164 2.6718 -0.2962 16 6 1.1709 4.3771 -0.5266 17 6 0.0638 5.4378 -0.5117 18 6 -0.2871 5.7881 -1.9564 19 6 -0.5614 4.5392 -2.7527 20 6 -1.2437 4.6763 -3.9546 21 6 -1.5256 3.5692 -4.7316 22 9 -2.1964 3.7104 -5.8958 23 6 -1.1121 2.3149 -4.3150 24 6 -0.4354 2.1790 -3.1213 25 6 -0.1596 3.2905 -2.3346 26 1 -0.3633 0.5337 0.8782 27 1 -0.3633 0.4937 -0.9013 28 1 -0.3633 -1.0274 0.0231 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8153 -0.0560 2.9609 32 1 2.4543 2.5362 -1.6942 33 1 1.9772 4.6974 -1.1866 34 1 1.5571 4.2355 0.4827 35 1 0.4163 6.3293 0.0070 36 1 -0.8169 5.0421 -0.0057 37 1 0.5461 6.3265 -2.4081 38 1 -1.1728 6.4232 -1.9672 39 1 -1.5602 5.6554 -4.2824 40 1 -1.3233 1.4457 -4.9204 41 1 -0.1169 1.2000 -2.7949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:32 Heat of formation + Delta-G solvation = -42.674915 kcal Electronic energy + Delta-G solvation = -21946.290152 eV Core-core repulsion = 18739.194077 eV Total energy + Delta-G solvation = -3207.096075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.74819 -39.89781 -36.67201 -35.07788 -32.92157 -31.38301 -30.17535 -29.69950 -27.78913 -25.88879 -23.23095 -22.81642 -22.45600 -21.40594 -19.55315 -19.30676 -17.02231 -16.83495 -16.23880 -15.57282 -15.36890 -14.91022 -14.48353 -14.29889 -13.97915 -13.49719 -13.25042 -13.21379 -12.68526 -12.59332 -12.48286 -12.33057 -11.89856 -11.65413 -11.37883 -11.15937 -11.02192 -10.93649 -10.80719 -10.68779 -10.46043 -10.27909 -10.10523 -9.70662 -9.43217 -8.89815 -8.67926 -8.46123 -8.23762 -7.29611 -6.06213 -4.14490 1.37152 1.44130 3.27203 3.32528 3.35016 3.78061 4.36338 4.37825 4.75034 4.92993 5.03654 5.11453 5.19634 5.24148 5.28729 5.34481 5.57248 5.73285 5.76675 5.82217 5.97162 6.04517 6.15327 6.21490 6.28016 6.33234 6.34533 6.41862 6.48256 6.59994 6.62100 6.69801 6.87726 7.05121 7.10282 7.17389 7.43616 7.53139 7.73651 7.93287 8.20531 8.33715 8.62232 8.97842 9.51916 10.98011 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.004805 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.905738 B = 5825.486579 C = 6293.488739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.014 0.986 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.682 5.682 14 C 0.127 3.873 15 H 0.086 0.914 16 C -0.145 4.145 17 C -0.117 4.117 18 C -0.078 4.078 19 C -0.052 4.052 20 C -0.166 4.166 21 C 0.086 3.914 22 F -0.149 7.149 23 C -0.167 4.167 24 C -0.058 4.058 25 C -0.068 4.068 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.262 0.738 32 H 0.334 0.666 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 7.753 -7.691 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.032 0.968 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.311 5.311 14 C 0.017 3.983 15 H 0.103 0.897 16 C -0.184 4.184 17 C -0.155 4.155 18 C -0.115 4.115 19 C -0.052 4.052 20 C -0.185 4.185 21 C 0.067 3.933 22 F -0.127 7.127 23 C -0.185 4.185 24 C -0.076 4.076 25 C -0.069 4.069 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.976 7.123 -7.730 13.822 hybrid contribution 1.366 0.676 0.273 1.548 sum -7.610 7.799 -7.457 13.204 Atomic orbital electron populations 1.21842 0.99631 0.98795 0.99884 1.21549 0.91457 0.99616 1.01835 1.19131 0.93996 0.91057 0.84672 0.96798 1.21451 0.91636 1.38449 1.05228 0.92512 1.24894 0.98021 0.95032 0.95685 1.69870 1.34911 1.38260 1.09384 0.86659 0.85789 0.78185 0.77350 1.20402 1.21309 1.20236 1.60832 1.11581 1.30230 1.28476 1.20401 0.94434 0.91477 0.92007 0.89663 1.22300 0.97775 0.95691 1.02682 1.21534 0.99389 0.99229 0.95374 1.20475 1.01596 0.94245 0.95225 1.19486 0.96922 0.94862 0.93956 1.20979 1.03722 0.97787 0.95992 1.17602 0.97465 0.94855 0.83355 1.91454 1.78277 1.96718 1.46289 1.21127 1.02577 0.95835 0.98993 1.21261 0.93945 1.00413 0.91971 1.19920 0.97994 0.91650 0.97296 0.94586 0.93636 0.95333 0.94561 0.89313 0.92829 0.84741 0.91806 0.90708 0.91728 0.91730 0.90617 0.91047 0.85591 0.85290 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.98 37.16 0.33 -2.47 16 2 C -0.11 -2.43 5.45 -26.73 -0.15 -2.57 16 3 C 0.22 5.05 1.93 -68.86 -0.13 4.92 16 4 H 0.01 0.36 7.05 -51.93 -0.37 0.00 16 5 C -0.53 -13.60 8.60 -34.44 -0.30 -13.89 16 6 H 0.06 1.44 7.36 -52.49 -0.39 1.06 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.24 11.29 55.43 0.63 -23.62 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -13.12 4.82 -102.35 -0.49 -13.62 16 14 C 0.13 2.12 1.66 -69.03 -0.11 2.01 16 15 H 0.09 1.53 6.79 -51.93 -0.35 1.17 16 16 C -0.15 -2.24 5.19 -26.70 -0.14 -2.38 16 17 C -0.12 -1.45 5.98 -26.70 -0.16 -1.61 16 18 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 19 C -0.05 -0.70 5.74 -104.62 -0.60 -1.30 16 20 C -0.17 -2.18 9.59 -39.37 -0.38 -2.55 16 21 C 0.09 1.21 7.30 -39.52 -0.29 0.92 16 22 F -0.15 -2.09 17.27 2.25 0.04 -2.05 16 23 C -0.17 -2.32 10.03 -39.62 -0.40 -2.71 16 24 C -0.06 -0.87 9.11 -39.45 -0.36 -1.23 16 25 C -0.07 -1.03 5.55 -104.60 -0.58 -1.61 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.82 5.71 -51.93 -0.30 0.52 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 2.30 5.95 -51.93 -0.31 1.99 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 32 H 0.33 6.60 7.52 -39.30 -0.30 6.30 16 33 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 34 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.13 1.39 8.05 -52.49 -0.42 0.97 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.15 2.30 6.28 -52.49 -0.33 1.97 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -26.08 324.02 -9.56 -35.64 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.09 Total: 7.11 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.51 Total: -23.91 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.13 Total: -37.23 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.08 -9.56 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.033 kcal (2) G-P(sol) polarization free energy of solvation -26.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds