Wall clock time and date at job start Mon Mar 30 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47190 * 54.71202 * 3 2 1 5 5 C 1.50703 * 109.47532 * 174.71123 * 3 2 1 6 6 H 1.07993 * 120.00045 * 119.99399 * 5 3 2 7 7 C 1.37877 * 119.99642 * 300.00204 * 5 3 2 8 8 N 1.31515 * 120.00387 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47466 * 60.00145 * 9 7 5 11 11 H 1.48504 * 109.46940 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47409 * 299.99473 * 9 7 5 13 13 N 1.46898 * 109.47229 * 294.70854 * 3 2 1 14 14 C 1.46906 * 110.99891 * 107.02522 * 13 3 2 15 15 H 1.08994 * 109.25013 * 322.39618 * 14 13 3 16 16 C 1.52731 * 109.24957 * 81.85908 * 14 13 3 17 17 C 1.53330 * 108.38372 * 171.35580 * 16 14 13 18 18 C 1.52736 * 108.37918 * 290.11228 * 17 16 14 19 19 C 1.50631 * 110.59204 * 51.08293 * 18 17 16 20 20 C 1.38884 * 117.72117 * 162.51932 * 19 18 17 21 21 C 1.38156 * 120.52555 * 179.97438 * 20 19 18 22 22 F 1.35102 * 120.14690 * 179.62643 * 21 20 19 23 23 C 1.38491 * 119.71170 * 359.33042 * 21 20 19 24 24 C 1.37888 * 119.74836 * 0.70437 * 23 21 20 25 25 C 1.37680 * 122.56854 * 342.30239 * 19 18 17 26 26 H 1.08999 * 109.46794 * 301.28639 * 1 2 3 27 27 H 1.08996 * 109.46891 * 61.28837 * 1 2 3 28 28 H 1.09003 * 109.46911 * 181.28524 * 1 2 3 29 29 H 1.08999 * 109.47666 * 239.99724 * 2 1 3 30 30 H 1.09006 * 109.47241 * 119.99495 * 2 1 3 31 31 H 0.96998 * 120.00074 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00347 * 230.98246 * 13 3 2 33 33 H 1.09006 * 109.68638 * 51.63242 * 16 14 13 34 34 H 1.08998 * 109.71518 * 291.09631 * 16 14 13 35 35 H 1.08996 * 109.68731 * 170.38484 * 17 16 14 36 36 H 1.09004 * 109.67818 * 49.82766 * 17 16 14 37 37 H 1.09002 * 109.24921 * 290.80306 * 18 17 16 38 38 H 1.08998 * 109.25136 * 171.37873 * 18 17 16 39 39 H 1.07998 * 119.74093 * 359.71435 * 20 19 18 40 40 H 1.08008 * 120.12504 * 180.39807 * 23 21 20 41 41 H 1.08002 * 119.71397 * 179.74321 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 0.8388 5 6 3.5413 1.4446 0.1310 6 1 4.1502 1.8878 -0.6430 7 6 4.1374 0.8805 1.2389 8 7 3.3959 0.3411 2.1816 9 14 5.9983 0.8825 1.4009 10 1 6.4939 2.2824 1.4006 11 1 6.3851 0.2213 2.6732 12 1 6.5955 0.1458 0.2583 13 7 1.6574 2.0971 -1.2582 14 6 0.5761 3.0671 -1.0393 15 1 -0.1164 2.6718 -0.2962 16 6 1.1709 4.3771 -0.5266 17 6 0.0638 5.4378 -0.5117 18 6 -0.2871 5.7881 -1.9564 19 6 -0.5614 4.5392 -2.7527 20 6 -1.2437 4.6763 -3.9546 21 6 -1.5256 3.5692 -4.7316 22 9 -2.1964 3.7104 -5.8958 23 6 -1.1121 2.3149 -4.3150 24 6 -0.4354 2.1790 -3.1213 25 6 -0.1596 3.2905 -2.3346 26 1 -0.3633 0.5337 0.8782 27 1 -0.3633 0.4937 -0.9013 28 1 -0.3633 -1.0274 0.0231 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8153 -0.0560 2.9609 32 1 2.4543 2.5362 -1.6942 33 1 1.9772 4.6974 -1.1866 34 1 1.5571 4.2355 0.4827 35 1 0.4163 6.3293 0.0070 36 1 -0.8169 5.0421 -0.0057 37 1 0.5461 6.3265 -2.4081 38 1 -1.1728 6.4232 -1.9672 39 1 -1.5602 5.6554 -4.2824 40 1 -1.3233 1.4457 -4.9204 41 1 -0.1169 1.2000 -2.7949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:32 Heat of formation + Delta-G solvation = -54.614892 kcal Electronic energy + Delta-G solvation = -21946.807908 eV Core-core repulsion = 18739.194077 eV Total energy + Delta-G solvation = -3207.613832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83071 -41.06130 -38.16350 -36.39481 -34.53390 -33.08016 -31.53030 -30.86683 -29.19411 -27.54637 -24.79575 -24.15370 -23.62697 -22.63901 -21.30711 -20.54153 -18.69308 -18.05176 -17.40123 -16.95631 -16.59214 -16.48955 -15.88705 -15.68996 -15.31034 -14.67827 -14.65541 -14.43582 -14.13967 -13.93882 -13.82044 -13.67628 -13.29255 -13.21336 -12.97769 -12.77789 -12.64842 -12.43324 -12.18494 -12.06577 -11.84095 -11.66205 -11.60925 -11.39822 -11.07582 -10.81849 -10.46428 -9.73630 -9.37756 -8.92352 -8.08046 -6.23016 0.25568 0.36630 1.42466 1.43747 1.50607 2.42656 2.67051 3.18437 3.31233 3.57895 3.80114 3.86940 4.04487 4.05875 4.17439 4.30042 4.41985 4.53201 4.61687 4.64371 4.72258 4.75422 4.88685 4.93537 4.97331 5.07355 5.10761 5.14096 5.18689 5.26867 5.33827 5.38968 5.43012 5.50088 5.59763 5.68819 5.71360 5.83075 6.01584 6.05771 6.31775 6.50002 6.83726 7.08070 7.47129 8.94384 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.004805 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.905738 B = 5825.486579 C = 6293.488739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C 0.230 3.770 4 H -0.016 1.016 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.132 3.868 15 H 0.069 0.931 16 C -0.142 4.142 17 C -0.111 4.111 18 C -0.075 4.075 19 C -0.050 4.050 20 C -0.160 4.160 21 C 0.080 3.920 22 F -0.148 7.148 23 C -0.168 4.168 24 C -0.069 4.069 25 C -0.082 4.082 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 9.410 -9.036 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C 0.121 3.879 4 H 0.002 0.998 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.304 5.304 14 C 0.022 3.978 15 H 0.087 0.913 16 C -0.181 4.181 17 C -0.149 4.149 18 C -0.112 4.112 19 C -0.051 4.051 20 C -0.178 4.178 21 C 0.061 3.939 22 F -0.127 7.127 23 C -0.186 4.186 24 C -0.087 4.087 25 C -0.083 4.083 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.598 8.791 -9.089 15.875 hybrid contribution 1.519 0.173 0.652 1.662 sum -8.079 8.964 -8.437 14.724 Atomic orbital electron populations 1.21693 0.96935 0.99968 1.00297 1.21395 0.93874 0.98969 0.99793 1.18852 0.92615 0.91181 0.85227 0.99786 1.21814 0.93142 1.38057 1.05156 0.92641 1.25611 1.01981 0.94882 0.95544 1.70006 1.36384 1.39011 1.09761 0.85715 0.81049 0.78264 0.77181 1.19818 1.21207 1.19927 1.60743 1.11837 1.31452 1.26333 1.20318 0.93276 0.91319 0.92899 0.91346 1.22196 0.98872 0.96286 1.00741 1.21501 0.97972 0.98697 0.96742 1.20535 1.03317 0.93572 0.93758 1.19701 0.96192 0.94869 0.94342 1.21228 1.02636 0.98735 0.95232 1.17746 0.97456 0.95173 0.83487 1.91458 1.78259 1.96714 1.46291 1.21240 1.02084 0.96709 0.98597 1.21166 0.94891 0.99876 0.92760 1.19785 0.99003 0.92812 0.96688 0.95122 0.92252 0.93699 0.95331 0.92419 0.93011 0.85069 0.91876 0.93551 0.89877 0.91864 0.89335 0.88278 0.82934 0.83857 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.98 71.98 0.65 -4.52 16 2 C -0.10 -4.80 5.45 30.59 0.17 -4.63 16 3 C 0.23 10.98 1.93 44.17 0.09 11.06 16 4 H -0.02 -0.83 7.05 -2.39 -0.02 -0.85 16 5 C -0.54 -28.60 8.60 25.60 0.22 -28.38 16 6 H 0.06 2.87 7.36 -2.91 -0.02 2.85 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -51.34 11.29 21.45 0.24 -51.10 16 9 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.67 -26.57 4.82 -477.72 -2.30 -28.88 16 14 C 0.13 4.44 1.66 44.06 0.07 4.51 16 15 H 0.07 2.52 6.79 -2.39 -0.02 2.50 16 16 C -0.14 -4.37 5.19 30.62 0.16 -4.21 16 17 C -0.11 -2.54 5.98 30.62 0.18 -2.35 16 18 C -0.08 -1.47 5.67 29.74 0.17 -1.30 16 19 C -0.05 -1.24 5.74 -19.86 -0.11 -1.35 16 20 C -0.16 -3.66 9.59 22.41 0.21 -3.45 16 21 C 0.08 2.05 7.30 22.31 0.16 2.21 16 22 F -0.15 -3.79 17.27 44.97 0.78 -3.01 16 23 C -0.17 -4.39 10.03 22.25 0.22 -4.17 16 24 C -0.07 -2.02 9.11 22.35 0.20 -1.81 16 25 C -0.08 -2.42 5.55 -19.85 -0.11 -2.53 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.06 2.14 5.71 -2.39 -0.01 2.13 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 3.10 5.95 -2.38 -0.01 3.09 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.33 13.33 7.52 -89.70 -0.67 12.65 16 33 H 0.06 1.93 7.94 -2.38 -0.02 1.91 16 34 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.47 8.10 -2.38 -0.02 1.45 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.47 8.12 -2.39 -0.02 1.45 16 39 H 0.15 2.68 8.05 -2.91 -0.02 2.65 16 40 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.13 4.20 6.28 -2.91 -0.02 4.18 16 Total: -1.00 -56.70 324.02 3.83 -52.87 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.36 Total: 24.84 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 2.73 Total: -39.42 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.06 Total: -79.98 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -56.70 3.83 -52.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.747 kcal (2) G-P(sol) polarization free energy of solvation -56.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds