Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 H 1.08998 * 109.47477 * 52.41204 * 3 2 1 5 5 C 1.50698 * 109.47398 * 172.41824 * 3 2 1 6 6 H 1.08003 * 120.00442 * 119.99888 * 5 3 2 7 7 C 1.37879 * 119.99556 * 299.99825 * 5 3 2 8 8 N 1.31513 * 120.00093 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99671 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47241 * 90.00056 * 9 7 5 11 11 H 1.48505 * 109.47181 * 209.99576 * 9 7 5 12 12 H 1.48496 * 109.47452 * 329.99900 * 9 7 5 13 13 N 1.46908 * 109.46877 * 292.41387 * 3 2 1 14 14 C 1.46906 * 110.99783 * 122.25058 * 13 3 2 15 15 C 1.50704 * 112.84449 * 49.78693 * 14 13 3 16 16 C 1.38273 * 119.98403 * 209.05244 * 15 14 13 17 17 C 1.38222 * 120.04726 * 180.32552 * 16 15 14 18 18 C 1.38213 * 120.02722 * 359.67991 * 17 16 15 19 19 C 1.38440 * 119.97772 * 0.02562 * 18 17 16 20 20 F 1.35092 * 120.02929 * 179.97438 * 19 18 17 21 21 C 1.38178 * 119.99035 * 28.78023 * 15 14 13 22 22 C 1.53778 * 113.61301 * 180.98023 * 14 13 3 23 23 C 1.53960 * 87.01729 * 89.23328 * 22 14 13 24 24 C 1.53775 * 113.61685 * 278.59066 * 14 13 3 25 25 H 1.08994 * 109.47312 * 293.23268 * 1 2 3 26 26 H 1.09008 * 109.46949 * 53.23425 * 1 2 3 27 27 H 1.09005 * 109.47352 * 173.23295 * 1 2 3 28 28 H 1.09001 * 109.47191 * 239.99624 * 2 1 3 29 29 H 1.09002 * 109.47043 * 119.99602 * 2 1 3 30 30 H 0.97003 * 119.99516 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99506 * 358.30038 * 13 3 2 32 32 H 1.07997 * 119.97246 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.98382 * 179.69968 * 17 16 15 34 34 H 1.08002 * 120.01437 * 180.02562 * 18 17 16 35 35 H 1.07996 * 120.00740 * 359.96883 * 21 15 14 36 36 H 1.08995 * 113.61393 * 203.75111 * 22 14 13 37 37 H 1.08998 * 113.61521 * 334.65611 * 22 14 13 38 38 H 1.09007 * 113.53504 * 270.81052 * 23 22 14 39 39 H 1.09000 * 113.73968 * 139.94253 * 23 22 14 40 40 H 1.09005 * 113.61368 * 25.34792 * 24 14 13 41 41 H 1.08997 * 113.61595 * 156.25042 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5702 1.9941 0.8143 5 6 3.5353 1.4466 0.1875 6 1 4.1732 1.8797 -0.5688 7 6 4.0890 0.8976 1.3246 8 7 3.3121 0.3707 2.2458 9 14 5.9424 0.9033 1.5573 10 1 6.3493 2.1469 2.2598 11 1 6.3434 -0.2758 2.3661 12 1 6.6080 0.8435 0.2312 13 7 1.7053 2.0802 -1.2804 14 6 0.8922 3.2857 -1.0715 15 6 1.4793 4.2162 -0.0416 16 6 0.6494 5.0291 0.7082 17 6 1.1870 5.8879 1.6484 18 6 2.5544 5.9302 1.8447 19 6 3.3859 5.1124 1.0988 20 9 4.7227 5.1532 1.2894 21 6 2.8463 4.2526 0.1569 22 6 0.4867 3.9892 -2.3774 23 6 -0.7606 3.0866 -2.3820 24 6 -0.6016 2.9914 -0.8555 25 1 -0.3633 0.4054 0.9443 26 1 -0.3633 0.6152 -0.8233 27 1 -0.3634 -1.0205 -0.1211 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7017 -0.0152 3.0459 31 1 1.2386 1.4314 -1.8963 32 1 -0.4193 4.9965 0.5557 33 1 0.5381 6.5259 2.2301 34 1 2.9742 6.6010 2.5797 35 1 3.4938 3.6140 -0.4255 36 1 0.2592 5.0476 -2.2508 37 1 1.1683 3.7979 -3.2063 38 1 -0.6093 2.1377 -2.8968 39 1 -1.6709 3.5977 -2.6952 40 1 -0.7973 1.9957 -0.4574 41 1 -1.1272 3.7765 -0.3119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -5.232493 kcal Electronic energy + Delta-G solvation = -22948.470444 eV Core-core repulsion = 19742.997994 eV Total energy + Delta-G solvation = -3205.472450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.75451 -41.44593 -38.75018 -36.87475 -33.85169 -32.59093 -31.26630 -31.01118 -28.42344 -26.54585 -25.64244 -24.67125 -23.31564 -22.49964 -21.51957 -19.75460 -18.48472 -18.09337 -17.14987 -16.94444 -16.67609 -16.47086 -16.27540 -16.00274 -15.32397 -15.00713 -14.83771 -14.37611 -14.13576 -13.85863 -13.54497 -13.48887 -13.14345 -13.08493 -12.85422 -12.67402 -12.54409 -12.50581 -12.19389 -11.90095 -11.69163 -11.55042 -11.33664 -11.13995 -10.96012 -10.87762 -10.37326 -9.58517 -9.46673 -8.85335 -8.04137 -6.09549 0.35213 0.52626 1.34205 1.38989 1.44687 2.42471 2.79572 3.23287 3.44309 3.57292 3.75532 3.86961 3.96150 4.15593 4.19937 4.28879 4.37413 4.50431 4.56845 4.64003 4.71756 4.73097 4.90090 4.94554 5.04689 5.10769 5.16606 5.25466 5.27120 5.30016 5.39965 5.40489 5.44855 5.50160 5.54362 5.65194 5.73467 5.87841 5.95009 6.17502 6.41208 6.72852 6.99869 7.01766 7.56222 8.98200 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.009922 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.803534 B = 2821.196807 C = 4218.803514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.236 3.764 4 H -0.002 1.002 5 C -0.484 4.484 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.926 3.074 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.666 5.666 14 C 0.126 3.874 15 C -0.044 4.044 16 C -0.133 4.133 17 C -0.098 4.098 18 C -0.167 4.167 19 C 0.053 3.947 20 F -0.163 7.163 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.190 4.190 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.256 0.744 31 H 0.336 0.664 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 8.705 -5.309 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.128 3.872 4 H 0.015 0.985 5 C -0.523 4.523 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.754 3.246 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.297 5.297 14 C 0.034 3.966 15 C -0.045 4.045 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.185 4.185 19 C 0.034 3.966 20 F -0.142 7.142 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.229 4.229 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.668 8.938 -5.185 14.151 hybrid contribution 1.199 -0.836 0.913 1.723 sum -8.469 8.102 -4.272 12.475 Atomic orbital electron populations 1.22016 0.96404 1.01082 1.00757 1.21917 0.94402 1.00294 1.01202 1.18821 0.93371 0.89512 0.85524 0.98469 1.21426 0.93214 1.34980 1.02685 0.93522 1.25404 1.00200 0.96033 0.96365 1.69964 1.35167 1.40994 1.09434 0.86036 0.83427 0.77056 0.78116 1.21492 1.20859 1.19506 1.60490 1.45692 1.07890 1.15614 1.21055 0.90518 0.90893 0.94145 1.19627 0.91863 0.96281 0.96711 1.21427 1.00881 0.96510 0.96282 1.21235 0.93496 0.98894 0.97913 1.21322 0.94828 1.01078 1.01294 1.18213 0.76950 1.00902 1.00530 1.91396 1.32200 1.95912 1.94691 1.21473 0.97576 0.96562 0.98533 1.23105 0.97457 0.99479 0.95741 1.22753 0.98383 1.00026 0.95040 1.24250 0.96752 1.03590 0.98267 0.94611 0.91140 0.92809 0.94612 0.91558 0.93494 0.84505 0.82894 0.81684 0.83664 0.85090 0.88823 0.91405 0.90231 0.89201 0.90480 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 8.62 71.98 0.62 -4.58 16 2 C -0.14 -6.28 5.07 30.59 0.16 -6.13 16 3 C 0.24 11.14 1.25 44.17 0.06 11.19 16 4 H 0.00 -0.13 6.51 -2.39 -0.02 -0.15 16 5 C -0.48 -26.29 6.47 25.60 0.17 -26.12 16 6 H 0.05 2.63 6.84 -2.91 -0.02 2.61 16 7 C 0.02 1.01 5.28 84.66 0.45 1.46 16 8 N -0.91 -52.92 11.29 21.45 0.24 -52.68 16 9 Si 0.93 46.05 29.54 68.60 2.03 48.08 16 10 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 11 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 13 N -0.67 -26.01 5.59 -453.16 -2.53 -28.54 16 14 C 0.13 4.11 0.94 3.30 0.00 4.12 16 15 C -0.04 -1.60 3.94 -19.87 -0.08 -1.68 16 16 C -0.13 -3.92 9.27 22.27 0.21 -3.71 16 17 C -0.10 -2.69 10.04 22.26 0.22 -2.46 16 18 C -0.17 -5.48 10.03 22.31 0.22 -5.26 16 19 C 0.05 2.20 7.30 22.38 0.16 2.36 16 20 F -0.16 -7.31 17.27 44.97 0.78 -6.54 16 21 C -0.12 -5.29 7.64 22.31 0.17 -5.12 16 22 C -0.12 -3.07 7.44 31.18 0.23 -2.84 16 23 C -0.12 -2.69 7.74 31.18 0.24 -2.45 16 24 C -0.19 -5.02 6.70 31.12 0.21 -4.81 16 25 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 26 H 0.07 2.18 4.43 -2.38 -0.01 2.17 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 29 H 0.07 3.50 5.90 -2.39 -0.01 3.49 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.34 11.92 6.37 -89.69 -0.57 11.35 16 32 H 0.15 3.48 5.79 -2.91 -0.02 3.46 16 33 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.13 6.45 4.97 -2.91 -0.01 6.43 16 36 H 0.09 2.13 8.09 -2.39 -0.02 2.12 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.70 7.71 -2.38 -0.02 1.68 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.24 4.02 -2.38 -0.01 2.23 16 41 H 0.10 2.22 5.70 -2.39 -0.01 2.21 16 Total: -1.00 -63.10 314.12 4.03 -59.07 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.48 Total: 26.66 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 3.04 Total: -46.04 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.29 Total: -81.22 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.78 Total: -6.54 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -63.10 4.03 -59.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.833 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds