Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 H 1.09009 * 109.46983 * 179.80680 * 3 2 1 5 5 C 1.50698 * 109.47518 * 59.80717 * 3 2 1 6 6 H 1.08005 * 119.99837 * 245.37738 * 5 3 2 7 7 C 1.37867 * 120.00163 * 65.37217 * 5 3 2 8 8 N 1.31517 * 120.00465 * 195.07728 * 7 5 3 9 9 Si 1.86805 * 119.99933 * 15.07750 * 7 5 3 10 10 H 1.48504 * 109.46882 * 90.14710 * 9 7 5 11 11 H 1.48498 * 109.47183 * 210.14220 * 9 7 5 12 12 H 1.48493 * 109.47474 * 330.14560 * 9 7 5 13 13 N 1.46898 * 109.47054 * 299.80072 * 3 2 1 14 14 C 1.46897 * 111.00239 * 272.81142 * 13 3 2 15 15 C 1.52996 * 115.55143 * 299.21993 * 14 13 3 16 16 C 1.50699 * 109.47392 * 296.44043 * 15 14 13 17 17 C 1.38263 * 119.98661 * 95.51357 * 16 15 14 18 18 C 1.38224 * 120.05103 * 179.97438 * 17 16 15 19 19 C 1.38221 * 120.02613 * 359.97438 * 18 17 16 20 20 C 1.38439 * 119.97130 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02306 * 180.02562 * 20 19 18 22 22 C 1.38173 * 119.98479 * 275.24014 * 16 15 14 23 23 C 1.53005 * 117.49600 * 153.55397 * 14 13 3 24 24 C 1.53003 * 117.49965 * 84.89534 * 14 13 3 25 25 H 1.08999 * 109.47649 * 184.58460 * 1 2 3 26 26 H 1.09003 * 109.47188 * 304.58631 * 1 2 3 27 27 H 1.09003 * 109.47439 * 64.58597 * 1 2 3 28 28 H 1.09001 * 109.46966 * 239.99981 * 2 1 3 29 29 H 1.09002 * 109.47487 * 119.99652 * 2 1 3 30 30 H 0.96998 * 120.00792 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99747 * 148.85793 * 13 3 2 32 32 H 1.09006 * 109.46771 * 56.44173 * 15 14 13 33 33 H 1.09001 * 109.47211 * 176.43687 * 15 14 13 34 34 H 1.08004 * 119.97784 * 359.97438 * 17 16 15 35 35 H 1.08007 * 119.98406 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.00924 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.01564 * 0.02562 * 22 16 15 38 38 H 1.08992 * 117.50357 * 0.02562 * 23 14 13 39 39 H 1.09006 * 117.49607 * 145.02404 * 23 14 13 40 40 H 1.08998 * 117.49772 * 214.98035 * 24 14 13 41 41 H 1.08997 * 117.49659 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4426 0.0035 5 6 1.5337 2.1544 1.2280 6 1 0.8434 2.9791 1.1281 7 6 1.9516 1.7529 2.4790 8 7 1.3041 2.1574 3.5499 9 14 3.4376 0.6344 2.6529 10 1 4.6655 1.4593 2.7837 11 1 3.2800 -0.2136 3.8617 12 1 3.5487 -0.2317 1.4518 13 7 1.5541 2.1336 -1.2018 14 6 2.4690 1.9291 -2.3328 15 6 3.8942 2.4476 -2.1308 16 6 3.8651 3.9452 -1.9653 17 6 3.8475 4.5003 -0.6991 18 6 3.8214 5.8738 -0.5457 19 6 3.8134 6.6939 -1.6583 20 6 3.8311 6.1392 -2.9265 21 9 3.8238 6.9399 -4.0147 22 6 3.8619 4.7631 -3.0789 23 6 1.8797 2.0133 -3.7423 24 6 2.2913 0.6569 -3.1641 25 1 -0.3634 -1.0243 0.0821 26 1 -0.3634 0.5834 0.8461 27 1 -0.3634 0.4410 -0.9282 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5979 1.8746 4.4300 31 1 1.4153 3.1168 -1.0223 32 1 4.3237 1.9917 -1.2387 33 1 4.5011 2.1897 -2.9987 34 1 3.8541 3.8603 0.1709 35 1 3.8081 6.3062 0.4439 36 1 3.7935 7.7670 -1.5381 37 1 3.8797 4.3294 -4.0678 38 1 0.8134 2.2208 -3.8304 39 1 2.5077 2.4377 -4.5257 40 1 3.1897 0.1897 -3.5674 41 1 1.4958 -0.0283 -2.8716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -0.947862 kcal Electronic energy + Delta-G solvation = -22197.248662 eV Core-core repulsion = 18991.962007 eV Total energy + Delta-G solvation = -3205.286655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.77083 -39.44946 -37.72182 -34.91649 -32.11978 -31.86841 -30.47351 -29.93597 -26.96206 -26.30383 -23.21023 -22.55878 -22.03257 -21.58187 -20.13404 -18.37827 -16.96006 -16.73581 -16.14841 -15.95976 -15.51797 -15.30594 -15.00645 -14.40857 -13.83994 -13.40233 -13.38553 -13.20332 -13.06565 -12.71207 -12.63476 -12.13155 -11.84399 -11.80952 -11.46360 -11.15251 -11.04698 -10.96445 -10.82493 -10.49151 -10.24183 -10.17411 -9.87460 -9.40756 -9.15339 -9.03846 -8.80551 -8.46728 -8.42626 -7.48765 -6.15194 -4.09110 1.35087 1.39213 3.21792 3.32750 3.35132 3.75988 4.13269 4.36727 4.37885 4.79906 4.84176 4.97852 5.13093 5.17408 5.18223 5.40780 5.46743 5.49519 5.57252 5.92976 5.95651 5.98198 6.00956 6.12908 6.25033 6.25571 6.30393 6.31527 6.38563 6.53621 6.56370 6.59811 6.78151 6.89083 7.00307 7.11087 7.20389 7.30712 7.55252 7.68753 7.96737 8.33413 8.61931 8.94755 9.51122 10.97630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.006689 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.253302 B = 4185.166313 C = 5166.342084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.193 3.807 4 H 0.001 0.999 5 C -0.518 4.518 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.855 3.145 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.638 5.638 14 C 0.051 3.949 15 C -0.077 4.077 16 C -0.043 4.043 17 C -0.112 4.112 18 C -0.085 4.085 19 C -0.162 4.162 20 C 0.089 3.911 21 F -0.147 7.147 22 C -0.149 4.149 23 C -0.167 4.167 24 C -0.162 4.162 25 H 0.017 0.983 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.343 0.657 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 2.839 -11.822 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.018 0.982 5 C -0.556 4.556 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.526 5.526 9 Si 0.682 3.318 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.177 1.177 13 N -0.268 5.268 14 C -0.042 4.042 15 C -0.116 4.116 16 C -0.044 4.044 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.181 4.181 20 C 0.070 3.930 21 F -0.126 7.126 22 C -0.168 4.168 23 C -0.205 4.205 24 C -0.200 4.200 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.376 2.351 -11.819 13.195 hybrid contribution 1.507 0.123 0.428 1.572 sum 6.883 2.474 -11.391 13.537 Atomic orbital electron populations 1.21479 0.96137 0.98068 1.02548 1.21814 0.96703 0.98010 0.98284 1.19462 0.92813 0.91572 0.87728 0.98167 1.20979 1.28317 1.17614 0.88666 0.90600 1.24817 0.96219 0.95382 0.95806 1.69967 1.38403 1.45950 0.98324 0.87345 0.84311 0.81772 0.78355 1.20745 1.21433 1.17651 1.60419 1.44000 1.17213 1.05205 1.21351 0.90559 1.01341 0.90927 1.20697 0.97214 0.90599 1.03113 1.19646 0.96877 0.95507 0.92320 1.21436 0.98619 0.95332 0.97651 1.21049 0.97519 0.93449 0.98319 1.21083 1.05102 1.00753 0.91188 1.17650 1.04140 0.88304 0.82935 1.91463 1.94199 1.73542 1.53388 1.20913 1.04792 0.91300 0.99812 1.23001 1.01507 1.00594 0.95388 1.23051 1.02788 0.91154 1.03009 0.96416 0.91359 0.93275 0.95203 0.93529 0.92710 0.83749 0.89817 0.90951 0.84251 0.85009 0.85312 0.85382 0.88590 0.89738 0.89705 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.53 37.15 0.35 -2.23 16 2 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 3 C 0.19 4.14 1.76 -68.86 -0.12 4.02 16 4 H 0.00 0.02 4.56 -51.92 -0.24 -0.22 16 5 C -0.52 -13.17 7.64 -34.45 -0.26 -13.43 16 6 H 0.08 2.14 7.88 -52.48 -0.41 1.73 16 7 C 0.08 2.16 5.36 -17.82 -0.10 2.07 16 8 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 9 Si 0.85 20.12 25.87 -169.99 -4.40 15.72 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.25 -5.64 5.40 56.52 0.31 -5.34 16 13 N -0.64 -12.04 5.72 -94.24 -0.54 -12.58 16 14 C 0.05 0.80 1.67 -131.60 -0.22 0.58 16 15 C -0.08 -1.13 5.04 -27.89 -0.14 -1.27 16 16 C -0.04 -0.64 4.73 -104.64 -0.49 -1.13 16 17 C -0.11 -1.77 9.36 -39.58 -0.37 -2.14 16 18 C -0.09 -1.21 10.04 -39.59 -0.40 -1.60 16 19 C -0.16 -2.17 10.03 -39.51 -0.40 -2.57 16 20 C 0.09 1.25 7.30 -39.42 -0.29 0.96 16 21 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 22 C -0.15 -2.06 9.70 -39.51 -0.38 -2.44 16 23 C -0.17 -2.28 10.18 -26.69 -0.27 -2.55 16 24 C -0.16 -2.32 9.16 -26.69 -0.24 -2.56 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 1.61 7.05 -51.93 -0.37 1.24 16 27 H 0.05 0.97 7.76 -51.93 -0.40 0.57 16 28 H 0.03 0.58 6.27 -51.93 -0.33 0.25 16 29 H 0.05 1.05 4.87 -51.93 -0.25 0.80 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.34 6.79 7.59 -39.29 -0.30 6.49 16 32 H 0.08 1.35 6.31 -51.93 -0.33 1.02 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.14 2.46 8.06 -52.48 -0.42 2.03 16 35 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.56 7.99 -52.49 -0.42 1.14 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.55 7.31 -51.93 -0.38 1.17 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -27.02 329.72 -8.66 -35.68 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.03 Total: 9.91 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -3.47 Total: -26.77 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.23 Total: -37.47 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.40 Total: 15.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.02 -8.66 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.731 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds