Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46969 * 2 1 4 4 H 1.08997 * 109.47161 * 305.67354 * 3 2 1 5 5 C 1.50700 * 109.46914 * 185.67675 * 3 2 1 6 6 H 1.08004 * 119.99799 * 244.14840 * 5 3 2 7 7 C 1.37876 * 120.00101 * 64.14991 * 5 3 2 8 8 N 1.31515 * 119.99690 * 191.20333 * 7 5 3 9 9 Si 1.86796 * 119.99927 * 11.20057 * 7 5 3 10 10 H 1.48505 * 109.47181 * 94.01417 * 9 7 5 11 11 H 1.48506 * 109.47273 * 214.01212 * 9 7 5 12 12 H 1.48501 * 109.47166 * 334.01245 * 9 7 5 13 13 N 1.46899 * 109.47178 * 65.67899 * 3 2 1 14 14 C 1.46902 * 110.99891 * 266.70322 * 13 3 2 15 15 H 1.09000 * 109.21753 * 39.19993 * 14 13 3 16 16 C 1.52733 * 109.25295 * 279.75622 * 14 13 3 17 17 C 1.53325 * 108.38514 * 188.62035 * 16 14 13 18 18 C 1.52740 * 108.37631 * 69.87151 * 17 16 14 19 19 C 1.50625 * 110.59080 * 308.91823 * 18 17 16 20 20 C 1.39133 * 117.75144 * 197.47727 * 19 18 17 21 21 F 1.35097 * 119.75277 * 0.26511 * 20 19 18 22 22 C 1.38154 * 120.48851 * 180.28107 * 20 19 18 23 23 C 1.38233 * 119.74368 * 0.37465 * 22 20 19 24 24 C 1.37932 * 119.79738 * 359.34121 * 23 22 20 25 25 C 1.37629 * 122.57569 * 17.70258 * 19 18 17 26 26 H 1.08994 * 109.47303 * 181.71146 * 1 2 3 27 27 H 1.08997 * 109.47249 * 301.71825 * 1 2 3 28 28 H 1.09007 * 109.46686 * 61.71343 * 1 2 3 29 29 H 1.08994 * 109.47213 * 240.00205 * 2 1 3 30 30 H 1.09006 * 109.46888 * 119.99617 * 2 1 3 31 31 H 0.97006 * 119.99307 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00025 * 30.65413 * 13 3 2 33 33 H 1.09002 * 109.68397 * 68.89722 * 16 14 13 34 34 H 1.09002 * 109.71156 * 308.36173 * 16 14 13 35 35 H 1.09006 * 109.68224 * 310.15670 * 17 16 14 36 36 H 1.08996 * 109.68772 * 189.59238 * 17 16 14 37 37 H 1.09002 * 109.25217 * 188.63781 * 18 17 16 38 38 H 1.08994 * 109.21962 * 69.18674 * 18 17 16 39 39 H 1.08005 * 120.12712 * 180.10004 * 22 20 19 40 40 H 1.08005 * 120.09753 * 179.59650 * 23 22 20 41 41 H 1.08003 * 119.69793 * 180.23386 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1572 1.8256 0.6602 7 6 4.1258 0.9610 -1.2913 8 7 5.4243 0.7564 -1.3325 9 14 3.0746 0.5960 -2.7916 10 1 3.0675 1.7781 -3.6905 11 1 3.6346 -0.5732 -3.5159 12 1 1.6859 0.2931 -2.3613 13 7 1.6654 2.0943 1.2621 14 6 0.3898 2.8103 1.1265 15 1 -0.2900 2.2190 0.5130 16 6 0.6375 4.1566 0.4492 17 6 -0.6575 4.9750 0.5120 18 6 -0.8983 5.3848 1.9636 19 6 -0.8135 4.1872 2.8731 20 6 -1.3621 4.3008 4.1467 21 9 -1.9491 5.4579 4.5230 22 6 -1.3106 3.2392 5.0293 23 6 -0.7027 2.0581 4.6468 24 6 -0.1639 1.9428 3.3823 25 6 -0.2167 3.0074 2.4911 26 1 -0.3633 -1.0271 0.0307 27 1 -0.3633 0.5403 0.8741 28 1 -0.3633 0.4870 -0.9050 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8361 0.4163 -2.1423 32 1 1.6263 1.4257 2.0167 33 1 0.9212 3.9976 -0.5912 34 1 1.4338 4.6890 0.9695 35 1 -1.4920 4.3694 0.1583 36 1 -0.5599 5.8652 -0.1094 37 1 -1.8880 5.8331 2.0510 38 1 -0.1454 6.1152 2.2598 39 1 -1.7398 3.3332 6.0160 40 1 -0.6535 1.2268 5.3345 41 1 0.3074 1.0180 3.0838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = -25.312557 kcal Electronic energy + Delta-G solvation = -22205.587194 eV Core-core repulsion = 18999.244007 eV Total energy + Delta-G solvation = -3206.343187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.88576 -40.07895 -37.05677 -35.49808 -32.78790 -31.69531 -30.33394 -29.82722 -28.18490 -26.54526 -23.36217 -22.96035 -22.55494 -21.27225 -19.90815 -19.37079 -17.45906 -16.59324 -16.35744 -16.09404 -15.64597 -15.19571 -14.81908 -14.45975 -14.00906 -13.76923 -13.57694 -13.24027 -13.01085 -12.80009 -12.56552 -12.34055 -12.06526 -11.93101 -11.74173 -11.53966 -11.42327 -11.00169 -10.81180 -10.71345 -10.61190 -10.34589 -10.04136 -9.92785 -9.36412 -9.25835 -8.72610 -8.55592 -8.43269 -7.36959 -6.05353 -3.99518 1.19060 1.24945 3.26018 3.34711 3.37890 3.59256 4.23068 4.42053 4.60451 4.66958 4.87738 4.96551 5.07617 5.20840 5.23728 5.32369 5.37583 5.48951 5.61162 5.70230 5.78436 5.79765 5.91020 5.95330 5.96570 6.01962 6.03690 6.11387 6.24113 6.34612 6.43367 6.48552 6.54029 6.60803 6.71483 6.75461 6.85939 6.94420 7.15585 7.73106 7.90549 8.29239 8.70220 9.10076 9.59581 11.08192 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.005163 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.559310 B = 5422.372835 C = 5788.158665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C 0.192 3.808 4 H 0.029 0.971 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.664 5.664 14 C 0.114 3.886 15 H 0.061 0.939 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.103 4.103 20 C 0.090 3.910 21 F -0.143 7.143 22 C -0.161 4.161 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.033 4.033 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 4.381 8.063 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.197 4.197 3 C 0.083 3.917 4 H 0.047 0.953 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.296 5.296 14 C 0.005 3.995 15 H 0.078 0.922 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.115 4.115 19 C -0.105 4.105 20 C 0.071 3.929 21 F -0.122 7.122 22 C -0.180 4.180 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.034 4.034 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.928 4.911 7.840 17.562 hybrid contribution -1.110 -0.903 -0.764 1.622 sum -16.038 4.008 7.076 17.982 Atomic orbital electron populations 1.22074 0.98607 1.00297 1.00778 1.22767 0.92795 1.01998 1.02143 1.19613 0.96857 0.87896 0.87322 0.95278 1.20954 0.88975 1.40326 1.03271 0.90174 1.24901 0.94679 0.95055 0.98430 1.69939 1.10133 1.45554 1.27987 0.87380 0.82268 0.78047 0.83919 1.20821 1.21486 1.17377 1.60847 1.27064 1.33582 1.08095 1.20596 0.91608 0.96529 0.90782 0.92156 1.21582 0.96786 0.94772 1.01469 1.21575 0.98671 1.00282 0.95136 1.20395 1.02229 0.94583 0.94279 1.19608 1.00602 0.96672 0.93579 1.17706 0.98647 0.82513 0.94006 1.91451 1.81918 1.47227 1.91574 1.20987 1.03772 0.93349 0.99935 1.20868 0.97097 0.96958 0.96261 1.21259 1.00228 0.99236 0.93820 1.19702 0.95310 0.91891 0.96483 0.93941 0.93155 0.93505 0.91712 0.92544 0.92810 0.84922 0.91081 0.90496 0.91966 0.91200 0.90979 0.90285 0.85146 0.85172 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.67 37.16 0.32 -2.32 16 2 C -0.16 -3.18 4.51 -26.73 -0.12 -3.30 16 3 C 0.19 4.23 1.58 -68.86 -0.11 4.12 16 4 H 0.03 0.67 5.70 -51.93 -0.30 0.37 16 5 C -0.50 -13.53 9.31 -34.44 -0.32 -13.85 16 6 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 7 C 0.07 1.98 5.38 -17.82 -0.10 1.89 16 8 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 9 Si 0.86 20.52 25.72 -169.99 -4.37 16.14 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.50 5.21 56.52 0.29 -5.21 16 13 N -0.66 -12.77 5.90 -102.35 -0.60 -13.37 16 14 C 0.11 1.86 1.57 -69.03 -0.11 1.75 16 15 H 0.06 0.99 5.20 -51.93 -0.27 0.72 16 16 C -0.11 -1.70 5.32 -26.70 -0.14 -1.84 16 17 C -0.12 -1.49 5.98 -26.70 -0.16 -1.65 16 18 C -0.08 -0.97 5.34 -28.05 -0.15 -1.12 16 19 C -0.10 -1.44 5.74 -104.55 -0.60 -2.04 16 20 C 0.09 1.21 7.21 -39.28 -0.28 0.92 16 21 F -0.14 -1.90 16.47 2.25 0.04 -1.87 16 22 C -0.16 -1.90 10.02 -39.61 -0.40 -2.29 16 23 C -0.09 -1.08 10.05 -39.70 -0.40 -1.48 16 24 C -0.13 -1.70 8.83 -39.44 -0.35 -2.04 16 25 C -0.03 -0.49 5.55 -104.62 -0.58 -1.07 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.76 5.59 -51.93 -0.29 0.47 16 28 H 0.05 0.77 8.11 -51.92 -0.42 0.35 16 29 H 0.06 1.41 4.50 -51.93 -0.23 1.18 16 30 H 0.06 1.11 8.01 -51.93 -0.42 0.70 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.33 5.97 5.64 -39.29 -0.22 5.75 16 33 H 0.07 1.20 7.35 -51.93 -0.38 0.81 16 34 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.81 7.85 -51.93 -0.41 0.41 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.13 1.66 6.31 -52.48 -0.33 1.33 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -29.32 313.91 -8.82 -38.13 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.89 Total: 6.86 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.49 Total: -24.33 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.17 Total: -39.67 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.37 Total: 16.14 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.32 -8.82 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.822 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds