Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46969 * 2 1 4 4 H 1.08997 * 109.47161 * 305.67354 * 3 2 1 5 5 C 1.50700 * 109.46914 * 185.67675 * 3 2 1 6 6 H 1.08004 * 119.99799 * 244.14840 * 5 3 2 7 7 C 1.37876 * 120.00101 * 64.14991 * 5 3 2 8 8 N 1.31515 * 119.99690 * 191.20333 * 7 5 3 9 9 Si 1.86796 * 119.99927 * 11.20057 * 7 5 3 10 10 H 1.48505 * 109.47181 * 94.01417 * 9 7 5 11 11 H 1.48506 * 109.47273 * 214.01212 * 9 7 5 12 12 H 1.48501 * 109.47166 * 334.01245 * 9 7 5 13 13 N 1.46899 * 109.47178 * 65.67899 * 3 2 1 14 14 C 1.46902 * 110.99891 * 266.70322 * 13 3 2 15 15 H 1.09000 * 109.21753 * 39.19993 * 14 13 3 16 16 C 1.52733 * 109.25295 * 279.75622 * 14 13 3 17 17 C 1.53325 * 108.38514 * 188.62035 * 16 14 13 18 18 C 1.52740 * 108.37631 * 69.87151 * 17 16 14 19 19 C 1.50625 * 110.59080 * 308.91823 * 18 17 16 20 20 C 1.39133 * 117.75144 * 197.47727 * 19 18 17 21 21 F 1.35097 * 119.75277 * 0.26511 * 20 19 18 22 22 C 1.38154 * 120.48851 * 180.28107 * 20 19 18 23 23 C 1.38233 * 119.74368 * 0.37465 * 22 20 19 24 24 C 1.37932 * 119.79738 * 359.34121 * 23 22 20 25 25 C 1.37629 * 122.57569 * 17.70258 * 19 18 17 26 26 H 1.08994 * 109.47303 * 181.71146 * 1 2 3 27 27 H 1.08997 * 109.47249 * 301.71825 * 1 2 3 28 28 H 1.09007 * 109.46686 * 61.71343 * 1 2 3 29 29 H 1.08994 * 109.47213 * 240.00205 * 2 1 3 30 30 H 1.09006 * 109.46888 * 119.99617 * 2 1 3 31 31 H 0.97006 * 119.99307 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00025 * 30.65413 * 13 3 2 33 33 H 1.09002 * 109.68397 * 68.89722 * 16 14 13 34 34 H 1.09002 * 109.71156 * 308.36173 * 16 14 13 35 35 H 1.09006 * 109.68224 * 310.15670 * 17 16 14 36 36 H 1.08996 * 109.68772 * 189.59238 * 17 16 14 37 37 H 1.09002 * 109.25217 * 188.63781 * 18 17 16 38 38 H 1.08994 * 109.21962 * 69.18674 * 18 17 16 39 39 H 1.08005 * 120.12712 * 180.10004 * 22 20 19 40 40 H 1.08005 * 120.09753 * 179.59650 * 23 22 20 41 41 H 1.08003 * 119.69793 * 180.23386 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1572 1.8256 0.6602 7 6 4.1258 0.9610 -1.2913 8 7 5.4243 0.7564 -1.3325 9 14 3.0746 0.5960 -2.7916 10 1 3.0675 1.7781 -3.6905 11 1 3.6346 -0.5732 -3.5159 12 1 1.6859 0.2931 -2.3613 13 7 1.6654 2.0943 1.2621 14 6 0.3898 2.8103 1.1265 15 1 -0.2900 2.2190 0.5130 16 6 0.6375 4.1566 0.4492 17 6 -0.6575 4.9750 0.5120 18 6 -0.8983 5.3848 1.9636 19 6 -0.8135 4.1872 2.8731 20 6 -1.3621 4.3008 4.1467 21 9 -1.9491 5.4579 4.5230 22 6 -1.3106 3.2392 5.0293 23 6 -0.7027 2.0581 4.6468 24 6 -0.1639 1.9428 3.3823 25 6 -0.2167 3.0074 2.4911 26 1 -0.3633 -1.0271 0.0307 27 1 -0.3633 0.5403 0.8741 28 1 -0.3633 0.4870 -0.9050 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8361 0.4163 -2.1423 32 1 1.6263 1.4257 2.0167 33 1 0.9212 3.9976 -0.5912 34 1 1.4338 4.6890 0.9695 35 1 -1.4920 4.3694 0.1583 36 1 -0.5599 5.8652 -0.1094 37 1 -1.8880 5.8331 2.0510 38 1 -0.1454 6.1152 2.2598 39 1 -1.7398 3.3332 6.0160 40 1 -0.6535 1.2268 5.3345 41 1 0.3074 1.0180 3.0838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = -42.447214 kcal Electronic energy + Delta-G solvation = -22206.330208 eV Core-core repulsion = 18999.244007 eV Total energy + Delta-G solvation = -3207.086201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88194 -41.18959 -38.45311 -36.67162 -34.56031 -33.30200 -31.36453 -31.09392 -29.53975 -28.13278 -24.73470 -24.09757 -23.88677 -22.44445 -21.57578 -20.47183 -19.01849 -18.07888 -17.41192 -17.27402 -16.81435 -16.65510 -16.11893 -15.83035 -15.20575 -15.18298 -14.87522 -14.66040 -14.30782 -14.18828 -13.75962 -13.59368 -13.53859 -13.22032 -12.89936 -12.84437 -12.60155 -12.49241 -12.38276 -12.36777 -11.83462 -11.69643 -11.60618 -11.28022 -11.16278 -11.04375 -10.55218 -9.79748 -9.54410 -8.87356 -8.23507 -6.22051 0.19182 0.26741 1.34694 1.39092 1.47015 2.38159 2.59915 3.10726 3.20939 3.51593 3.63863 3.68180 4.00310 4.06300 4.14527 4.25969 4.27710 4.36343 4.37105 4.41888 4.49707 4.52991 4.62245 4.82798 4.91888 4.92740 4.95311 5.04872 5.08029 5.12795 5.17618 5.20880 5.27665 5.28795 5.44473 5.46585 5.54561 5.59426 5.75346 5.96310 6.09870 6.74380 6.79814 6.84733 7.41913 8.94093 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.005163 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.559310 B = 5422.372835 C = 5788.158665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.156 4.156 3 C 0.200 3.800 4 H 0.028 0.972 5 C -0.500 4.500 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.951 5.951 9 Si 0.922 3.078 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.216 1.216 13 N -0.678 5.678 14 C 0.119 3.881 15 H 0.066 0.934 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.114 4.114 20 C 0.077 3.923 21 F -0.145 7.145 22 C -0.155 4.155 23 C -0.088 4.088 24 C -0.136 4.136 25 C -0.053 4.053 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.262 0.738 32 H 0.336 0.664 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 4.049 8.625 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.091 3.909 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.592 5.592 9 Si 0.747 3.253 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.138 1.138 13 N -0.311 5.311 14 C 0.010 3.990 15 H 0.083 0.917 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.114 4.114 19 C -0.115 4.115 20 C 0.058 3.942 21 F -0.123 7.123 22 C -0.173 4.173 23 C -0.106 4.106 24 C -0.155 4.155 25 C -0.053 4.053 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.174 0.826 40 H 0.179 0.821 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.266 4.588 8.425 20.632 hybrid contribution -0.011 -0.742 -0.773 1.071 sum -18.277 3.846 7.653 20.184 Atomic orbital electron populations 1.21981 0.95196 1.02117 1.01608 1.22608 0.95774 0.99746 1.01370 1.19345 0.93285 0.89665 0.88651 0.95453 1.21260 0.91748 1.39049 1.01765 0.95191 1.25755 0.95812 0.95120 1.01777 1.70105 1.12468 1.47672 1.28966 0.86317 0.82127 0.77548 0.79325 1.20841 1.21660 1.13842 1.60659 1.29721 1.33668 1.07015 1.20547 0.90111 0.96026 0.92288 0.91686 1.21571 0.98052 0.95188 1.00034 1.21517 0.96903 1.00491 0.95752 1.20422 1.02990 0.94205 0.93820 1.19753 1.00685 0.96751 0.94314 1.17873 0.99107 0.83017 0.94196 1.91446 1.81962 1.47393 1.91535 1.21340 1.02670 0.92654 1.00675 1.21198 0.95738 0.97794 0.95829 1.21391 1.00520 0.98961 0.94586 1.19583 0.96713 0.92997 0.96020 0.91673 0.91822 0.93196 0.93232 0.92711 0.92880 0.84324 0.92674 0.92574 0.91034 0.89551 0.89480 0.90478 0.82556 0.82118 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.67 71.98 0.62 -3.89 16 2 C -0.16 -6.03 4.51 30.60 0.14 -5.89 16 3 C 0.20 8.81 1.58 44.17 0.07 8.88 16 4 H 0.03 1.23 5.70 -2.39 -0.01 1.22 16 5 C -0.50 -28.23 9.31 25.60 0.24 -27.99 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.68 5.38 84.65 0.46 1.14 16 8 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 9 Si 0.92 42.72 25.72 68.60 1.76 44.49 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.22 -8.76 5.21 99.48 0.52 -8.24 16 13 N -0.68 -26.16 5.90 -477.73 -2.82 -28.98 16 14 C 0.12 3.77 1.57 44.06 0.07 3.84 16 15 H 0.07 1.99 5.20 -2.39 -0.01 1.98 16 16 C -0.11 -3.45 5.32 30.61 0.16 -3.28 16 17 C -0.11 -2.55 5.98 30.62 0.18 -2.36 16 18 C -0.08 -1.80 5.34 29.74 0.16 -1.64 16 19 C -0.11 -2.98 5.74 -19.82 -0.11 -3.09 16 20 C 0.08 1.88 7.21 22.46 0.16 2.04 16 21 F -0.14 -3.53 16.47 44.97 0.74 -2.79 16 22 C -0.15 -3.13 10.02 22.25 0.22 -2.91 16 23 C -0.09 -1.74 10.05 22.20 0.22 -1.51 16 24 C -0.14 -3.35 8.83 22.36 0.20 -3.15 16 25 C -0.05 -1.47 5.55 -19.86 -0.11 -1.58 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.72 5.59 -2.39 -0.01 1.71 16 28 H 0.05 1.46 8.11 -2.38 -0.02 1.44 16 29 H 0.05 2.06 4.50 -2.39 -0.01 2.05 16 30 H 0.05 2.11 8.01 -2.38 -0.02 2.09 16 31 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 32 H 0.34 12.08 5.64 -89.70 -0.51 11.57 16 33 H 0.05 1.86 7.35 -2.39 -0.02 1.84 16 34 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 35 H 0.07 1.56 8.10 -2.38 -0.02 1.54 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.76 7.85 -2.39 -0.02 1.74 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.13 3.10 6.31 -2.91 -0.02 3.09 16 Total: -1.00 -66.05 313.91 3.01 -63.04 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.35 Total: 25.09 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 2.68 Total: -41.41 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.52 Total: -88.42 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.79 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.76 Total: 44.49 kcal Total: -66.05 3.01 -63.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds