Wall clock time and date at job start Mon Mar 30 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 H 1.09003 * 109.46943 * 54.41047 * 3 2 1 5 5 C 1.50694 * 109.47244 * 174.41035 * 3 2 1 6 6 H 1.08001 * 120.00326 * 119.99991 * 5 3 2 7 7 C 1.37883 * 120.00317 * 300.00041 * 5 3 2 8 8 N 1.31515 * 119.99514 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00216 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47225 * 90.00025 * 9 7 5 11 11 H 1.48504 * 109.47135 * 210.00083 * 9 7 5 12 12 H 1.48493 * 109.47310 * 329.99772 * 9 7 5 13 13 N 1.46893 * 109.46928 * 294.41085 * 3 2 1 14 14 C 1.46901 * 111.00123 * 161.12929 * 13 3 2 15 15 H 1.08998 * 109.24747 * 10.33165 * 14 13 3 16 16 C 1.52728 * 109.25275 * 129.79482 * 14 13 3 17 17 C 1.53247 * 108.44100 * 171.33388 * 16 14 13 18 18 C 1.52735 * 108.35861 * 290.13300 * 17 16 14 19 19 C 1.50621 * 110.58000 * 51.13924 * 18 17 16 20 20 C 1.39132 * 117.75193 * 162.49055 * 19 18 17 21 21 F 1.35098 * 119.75679 * 359.41218 * 20 19 18 22 22 C 1.38164 * 120.48923 * 179.43789 * 20 19 18 23 23 C 1.38223 * 119.73963 * 0.02562 * 22 20 19 24 24 C 1.37942 * 119.80258 * 0.12510 * 23 22 20 25 25 C 1.37629 * 122.57728 * 342.15806 * 19 18 17 26 26 H 1.09005 * 109.47164 * 305.94772 * 1 2 3 27 27 H 1.08997 * 109.47267 * 65.95273 * 1 2 3 28 28 H 1.09001 * 109.47053 * 185.95308 * 1 2 3 29 29 H 1.09001 * 109.47525 * 239.99759 * 2 1 3 30 30 H 1.09000 * 109.47319 * 119.99769 * 2 1 3 31 31 H 0.97003 * 120.00121 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00626 * 37.17434 * 13 3 2 33 33 H 1.08998 * 109.68429 * 291.03435 * 16 14 13 34 34 H 1.09001 * 109.68094 * 51.58072 * 16 14 13 35 35 H 1.09000 * 109.69280 * 170.41346 * 17 16 14 36 36 H 1.08997 * 109.68588 * 49.84628 * 17 16 14 37 37 H 1.09005 * 109.25591 * 290.85123 * 18 17 16 38 38 H 1.09002 * 109.22310 * 171.40488 * 18 17 16 39 39 H 1.08002 * 120.12681 * 179.97438 * 22 20 19 40 40 H 1.07997 * 120.09762 * 180.12874 * 23 22 20 41 41 H 1.08008 * 119.69600 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5971 1.9844 0.8357 5 6 3.5405 1.4448 0.1384 6 1 4.1533 1.8867 -0.6333 7 6 4.1312 0.8827 1.2503 8 7 3.3850 0.3450 2.1902 9 14 5.9913 0.8850 1.4214 10 1 6.4223 2.1203 2.1239 11 1 6.4179 -0.3035 2.2031 12 1 6.6125 0.8397 0.0734 13 7 1.6635 2.0949 -1.2611 14 6 1.7241 3.5573 -1.1359 15 1 2.2093 3.8176 -0.1953 16 6 2.5361 4.1289 -2.2964 17 6 2.4069 5.6557 -2.2728 18 6 0.9783 6.0237 -2.6684 19 6 -0.0158 5.2514 -1.8414 20 6 -1.3257 5.7184 -1.8000 21 9 -1.6607 6.8368 -2.4797 22 6 -2.2864 5.0470 -1.0684 23 6 -1.9432 3.9033 -0.3722 24 6 -0.6439 3.4415 -0.4103 25 6 0.3247 4.1149 -1.1439 26 1 -0.3634 0.6033 0.8320 27 1 -0.3633 0.4187 -0.9384 28 1 -0.3633 -1.0221 0.1066 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8005 -0.0508 2.9723 32 1 0.7488 1.7956 -1.5642 33 1 3.5834 3.8482 -2.1850 34 1 2.1504 3.7424 -3.2398 35 1 3.1089 6.0947 -2.9817 36 1 2.6171 6.0265 -1.2697 37 1 0.8262 5.7918 -3.7226 38 1 0.8257 7.0913 -2.5097 39 1 -3.3015 5.4150 -1.0399 40 1 -2.6900 3.3729 0.1999 41 1 -0.3775 2.5479 0.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:44 Heat of formation + Delta-G solvation = -38.796736 kcal Electronic energy + Delta-G solvation = -22212.537495 eV Core-core repulsion = 19005.609590 eV Total energy + Delta-G solvation = -3206.927905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.80182 -39.91360 -36.54136 -35.46333 -32.78488 -31.45188 -30.19167 -29.68118 -27.67967 -26.10349 -23.30699 -22.75888 -22.67997 -21.13487 -19.73508 -19.17489 -17.24882 -16.38734 -16.19955 -15.70979 -15.49523 -15.04758 -14.58318 -14.42679 -13.86814 -13.76979 -13.35205 -12.97500 -12.81859 -12.60838 -12.34607 -12.19006 -11.95561 -11.69652 -11.50500 -11.31952 -11.12416 -10.85614 -10.67828 -10.66218 -10.46702 -10.10491 -9.94636 -9.68915 -9.47356 -9.11950 -8.60502 -8.45864 -8.37683 -7.26672 -5.99782 -4.03925 1.30401 1.35946 3.30565 3.37726 3.41938 3.71207 4.34753 4.42767 4.73171 4.78024 5.04330 5.12721 5.20343 5.29353 5.42821 5.43646 5.50369 5.60658 5.86483 5.94079 6.02971 6.09082 6.11563 6.12556 6.15378 6.23816 6.27345 6.35932 6.39775 6.50305 6.66913 6.74628 6.81277 6.84335 7.04200 7.08881 7.15188 7.47415 7.74920 7.89657 8.23739 8.34985 8.72255 9.04048 9.61388 11.05607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.005624 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.000967 B = 4977.568990 C = 5876.708933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.130 3.870 15 H 0.090 0.910 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.077 4.077 19 C -0.106 4.106 20 C 0.087 3.913 21 F -0.145 7.145 22 C -0.163 4.163 23 C -0.096 4.096 24 C -0.132 4.132 25 C -0.057 4.057 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.321 0.679 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 8.188 -6.410 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.308 5.308 14 C 0.020 3.980 15 H 0.108 0.892 16 C -0.139 4.139 17 C -0.158 4.158 18 C -0.113 4.113 19 C -0.107 4.107 20 C 0.068 3.932 21 F -0.123 7.123 22 C -0.182 4.182 23 C -0.114 4.114 24 C -0.150 4.150 25 C -0.059 4.059 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.733 8.048 -6.524 12.928 hybrid contribution -0.084 0.288 0.706 0.767 sum -7.816 8.336 -5.818 12.823 Atomic orbital electron populations 1.21950 0.99730 0.99890 0.99420 1.21748 0.91131 1.00312 1.03159 1.19293 0.95598 0.90090 0.84030 0.98114 1.21190 0.91157 1.36677 1.04273 0.91967 1.24947 0.98055 0.95586 0.95860 1.69866 1.34704 1.39396 1.09550 0.86566 0.85834 0.77352 0.78062 1.20897 1.21396 1.19888 1.60859 1.32170 1.02574 1.35200 1.20458 0.88719 0.89355 0.99480 0.89187 1.21518 1.01149 0.92696 0.98530 1.21580 0.94964 0.97488 1.01793 1.20380 0.93796 0.98621 0.98552 1.19667 0.92860 0.97215 1.00971 1.17743 0.93698 0.85282 0.96509 1.91440 1.92970 1.49770 1.78161 1.20970 0.99143 0.97642 1.00408 1.20887 0.96563 0.95441 0.98498 1.21572 0.92874 1.01161 0.99378 1.20539 0.97873 0.93180 0.94315 0.93874 0.94452 0.94268 0.93920 0.88229 0.93068 0.85990 0.90679 0.91899 0.91488 0.91649 0.90650 0.91107 0.85282 0.85322 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.66 37.15 0.32 -2.47 16 2 C -0.13 -2.82 5.40 -26.73 -0.14 -2.96 16 3 C 0.22 5.08 1.22 -68.87 -0.08 5.00 16 4 H 0.00 0.03 7.21 -51.93 -0.37 -0.34 16 5 C -0.49 -13.01 8.39 -34.44 -0.29 -13.30 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.68 -13.59 5.83 -102.36 -0.60 -14.19 16 14 C 0.13 2.37 2.37 -69.03 -0.16 2.20 16 15 H 0.09 1.87 7.29 -51.93 -0.38 1.49 16 16 C -0.10 -1.62 5.56 -26.74 -0.15 -1.76 16 17 C -0.12 -1.61 5.98 -26.74 -0.16 -1.77 16 18 C -0.08 -1.01 5.34 -28.06 -0.15 -1.16 16 19 C -0.11 -1.59 5.74 -104.55 -0.60 -2.19 16 20 C 0.09 1.26 7.22 -39.28 -0.28 0.97 16 21 F -0.14 -2.05 16.47 2.25 0.04 -2.02 16 22 C -0.16 -2.14 10.02 -39.61 -0.40 -2.54 16 23 C -0.10 -1.29 10.05 -39.70 -0.40 -1.69 16 24 C -0.13 -2.09 8.63 -39.44 -0.34 -2.43 16 25 C -0.06 -0.94 5.34 -104.62 -0.56 -1.50 16 26 H 0.04 0.78 7.28 -51.93 -0.38 0.40 16 27 H 0.04 0.62 6.68 -51.93 -0.35 0.27 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.54 5.94 -51.93 -0.31 2.24 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.32 6.04 5.15 -39.29 -0.20 5.84 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.14 2.31 4.34 -52.48 -0.23 2.08 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -26.93 320.53 -9.58 -36.51 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.97 Total: 7.19 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -3.49 Total: -24.20 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.03 Total: -38.28 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.93 -9.58 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -26.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds