Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.09003 * 109.47259 * 55.00451 * 3 2 1 5 5 C 1.50697 * 109.47277 * 175.00047 * 3 2 1 6 6 H 1.08002 * 120.00102 * 119.99628 * 5 3 2 7 7 C 1.37882 * 120.00058 * 300.00575 * 5 3 2 8 8 N 1.31509 * 119.99702 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99662 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47477 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46806 * 120.00193 * 9 7 5 12 12 H 1.48501 * 109.47144 * 239.99547 * 9 7 5 13 13 N 1.46899 * 109.47234 * 295.00375 * 3 2 1 14 14 C 1.46898 * 111.00097 * 102.82229 * 13 3 2 15 15 H 1.09000 * 109.25201 * 339.16407 * 14 13 3 16 16 C 1.52739 * 109.22160 * 219.71812 * 14 13 3 17 17 C 1.53319 * 108.39191 * 188.61900 * 16 14 13 18 18 C 1.52738 * 108.38744 * 69.83567 * 17 16 14 19 19 C 1.50633 * 110.52297 * 308.67563 * 18 17 16 20 20 C 1.39138 * 117.75232 * 197.26045 * 19 18 17 21 21 F 1.35098 * 119.75522 * 1.06820 * 20 19 18 22 22 C 1.38164 * 120.48838 * 180.79864 * 20 19 18 23 23 C 1.38229 * 119.74003 * 0.22782 * 22 20 19 24 24 C 1.37932 * 119.80091 * 359.86797 * 23 22 20 25 25 C 1.37617 * 122.57049 * 18.33909 * 19 18 17 26 26 H 1.08999 * 109.47131 * 298.27803 * 1 2 3 27 27 H 1.09000 * 109.47009 * 58.27426 * 1 2 3 28 28 H 1.08995 * 109.47021 * 178.27755 * 1 2 3 29 29 H 1.09003 * 109.46701 * 240.00536 * 2 1 3 30 30 H 1.08993 * 109.46894 * 120.00364 * 2 1 3 31 31 H 0.97003 * 119.99733 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00101 * 338.86630 * 13 3 2 33 33 H 1.08997 * 109.67607 * 308.34808 * 16 14 13 34 34 H 1.09004 * 109.67504 * 68.85881 * 16 14 13 35 35 H 1.09000 * 109.67972 * 189.55776 * 17 16 14 36 36 H 1.08998 * 109.68722 * 310.10854 * 17 16 14 37 37 H 1.09005 * 109.25390 * 69.15871 * 18 17 16 38 38 H 1.08992 * 109.25436 * 188.62619 * 18 17 16 39 39 H 1.07994 * 120.12465 * 180.25350 * 22 20 19 40 40 H 1.08005 * 120.09156 * 179.88783 * 23 22 20 41 41 H 1.08007 * 119.69690 * 180.08246 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8800 1.3809 10 1 6.5988 1.5453 0.1935 11 1 6.4001 1.6156 2.6091 12 1 6.4963 -0.5190 1.4624 13 7 1.6514 2.0993 -1.2552 14 6 0.5056 2.9949 -1.0478 15 1 -0.0191 2.7025 -0.1383 16 6 -0.4454 2.8784 -2.2373 17 6 -1.5154 3.9690 -2.1099 18 6 -0.8545 5.3236 -2.3574 19 6 0.3685 5.4805 -1.4921 20 6 0.8751 6.7639 -1.3129 21 9 0.2553 7.8161 -1.8907 22 6 2.0041 6.9708 -0.5439 23 6 2.6375 5.8941 0.0478 24 6 2.1370 4.6213 -0.1310 25 6 1.0010 4.4100 -0.9024 26 1 -0.3633 0.4868 0.9050 27 1 -0.3633 0.5404 -0.8741 28 1 -0.3633 -1.0272 -0.0309 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8294 -0.0606 2.9501 32 1 1.4531 1.4187 -1.9731 33 1 0.1094 3.0150 -3.1655 34 1 -0.9190 1.8966 -2.2338 35 1 -2.2992 3.8025 -2.8489 36 1 -1.9443 3.9474 -1.1081 37 1 -0.5686 5.3977 -3.4067 38 1 -1.5628 6.1176 -2.1210 39 1 2.3899 7.9699 -0.4054 40 1 3.5216 6.0491 0.6486 41 1 2.6325 3.7813 0.3332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = -50.874296 kcal Electronic energy + Delta-G solvation = -22284.634264 eV Core-core repulsion = 19077.182636 eV Total energy + Delta-G solvation = -3207.451627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.83008 -41.00196 -38.24274 -36.66637 -34.42724 -32.96380 -31.30805 -30.79568 -29.55257 -27.56834 -24.77054 -24.16649 -23.75113 -22.43595 -21.58166 -20.46238 -18.50244 -17.95160 -17.34050 -16.89577 -16.65937 -16.52224 -16.28527 -15.45465 -15.30579 -14.88880 -14.82138 -14.41165 -14.29180 -14.07933 -13.62505 -13.41028 -13.27577 -13.15526 -12.97600 -12.73103 -12.65857 -12.49937 -12.27825 -12.00447 -11.86028 -11.73868 -11.54463 -11.42557 -11.10448 -10.88701 -10.39064 -9.58772 -9.42458 -8.91233 -8.03665 -6.13089 0.32412 0.35541 1.40731 1.44730 1.55168 2.46028 2.71499 3.22663 3.27791 3.61746 3.75995 3.78825 4.05013 4.15251 4.25879 4.31254 4.42587 4.46782 4.52398 4.55918 4.63473 4.68711 4.73175 4.91577 4.95946 5.00501 5.05925 5.10227 5.20643 5.26150 5.29948 5.34284 5.39834 5.44602 5.58950 5.62624 5.77137 5.83086 5.94232 6.11602 6.39762 6.71807 6.93611 7.02902 7.56219 8.99729 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.006320 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.348680 B = 4429.558559 C = 5694.778886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.144 4.144 3 C 0.230 3.770 4 H -0.001 1.001 5 C -0.499 4.499 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.128 3.872 15 H 0.045 0.955 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.075 4.075 19 C -0.116 4.116 20 C 0.069 3.931 21 F -0.144 7.144 22 C -0.155 4.155 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.045 4.045 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.258 0.742 32 H 0.336 0.664 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 8.366 -7.648 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.122 3.878 4 H 0.017 0.983 5 C -0.538 4.538 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.018 3.982 15 H 0.063 0.937 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.112 4.112 19 C -0.117 4.117 20 C 0.050 3.950 21 F -0.122 7.122 22 C -0.174 4.174 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.046 4.046 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.478 8.810 -7.447 14.316 hybrid contribution 0.676 -0.689 0.735 1.213 sum -7.802 8.121 -6.713 13.110 Atomic orbital electron populations 1.21807 0.96478 1.00910 1.00542 1.22063 0.94274 1.00684 1.01308 1.19019 0.93731 0.89223 0.85841 0.98332 1.21498 0.92817 1.35209 1.04286 0.93119 1.25585 1.01529 0.95580 0.95858 1.69998 1.35928 1.40081 1.10003 0.85677 0.81786 0.77441 0.77725 1.19589 1.21046 1.20999 1.60593 1.36178 1.24020 1.10198 1.20348 0.90358 0.89381 0.98096 0.93729 1.21884 0.96502 1.00149 0.97423 1.21495 0.97552 0.92687 1.02873 1.20433 0.93054 0.99185 0.98483 1.19834 0.99773 0.90700 1.01381 1.17756 0.94730 0.83533 0.98991 1.91428 1.82112 1.55724 1.82973 1.21214 0.95726 1.01051 0.99399 1.21131 1.00303 0.91739 0.99671 1.21748 0.96186 0.98032 0.97985 1.19713 0.94483 0.94962 0.95486 0.94746 0.92226 0.92848 0.94509 0.91592 0.93266 0.84500 0.90756 0.90195 0.88450 0.91959 0.89657 0.89926 0.82943 0.84250 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.06 71.98 0.65 -4.34 16 2 C -0.14 -6.41 5.08 30.60 0.16 -6.25 16 3 C 0.23 10.81 1.03 44.17 0.05 10.86 16 4 H 0.00 -0.06 6.85 -2.39 -0.02 -0.08 16 5 C -0.50 -26.49 7.75 25.60 0.20 -26.29 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.67 5.29 84.66 0.45 1.12 16 8 N -0.92 -51.59 11.29 21.45 0.24 -51.35 16 9 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.68 -26.65 5.44 -477.73 -2.60 -29.25 16 14 C 0.13 4.33 1.55 44.06 0.07 4.40 16 15 H 0.04 1.66 6.63 -2.39 -0.02 1.65 16 16 C -0.12 -3.05 5.00 30.61 0.15 -2.90 16 17 C -0.11 -2.27 5.97 30.61 0.18 -2.08 16 18 C -0.07 -1.74 5.35 29.74 0.16 -1.58 16 19 C -0.12 -3.51 5.74 -19.82 -0.11 -3.63 16 20 C 0.07 2.07 7.22 22.47 0.16 2.23 16 21 F -0.14 -4.03 16.47 44.97 0.74 -3.29 16 22 C -0.16 -4.49 10.02 22.25 0.22 -4.27 16 23 C -0.11 -3.62 10.05 22.20 0.22 -3.40 16 24 C -0.12 -4.70 9.18 22.36 0.21 -4.50 16 25 C -0.05 -1.60 5.55 -19.87 -0.11 -1.71 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.83 5.20 -2.39 -0.01 1.82 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 30 H 0.07 3.43 5.95 -2.39 -0.01 3.41 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.34 12.15 7.32 -89.70 -0.66 11.49 16 33 H 0.07 1.85 8.10 -2.39 -0.02 1.84 16 34 H 0.08 1.80 6.78 -2.39 -0.02 1.78 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 39 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.12 5.71 4.97 -2.91 -0.01 5.69 16 Total: -1.00 -58.24 318.50 3.44 -54.80 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.38 Total: 25.94 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 2.65 Total: -42.35 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.36 Total: -80.60 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.74 Total: -3.29 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -58.24 3.44 -54.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.922 kcal (2) G-P(sol) polarization free energy of solvation -58.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds