Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46759 * 2 1 4 4 H 1.08999 * 109.46796 * 308.51700 * 3 2 1 5 5 C 1.50698 * 109.46882 * 188.51303 * 3 2 1 6 6 H 1.07999 * 120.00033 * 243.30771 * 5 3 2 7 7 C 1.37880 * 119.99873 * 63.31150 * 5 3 2 8 8 N 1.31512 * 120.00099 * 5.88549 * 7 5 3 9 9 Si 1.86802 * 119.99829 * 185.88802 * 7 5 3 10 10 H 1.48500 * 109.46961 * 60.00133 * 9 7 5 11 11 H 1.48501 * 109.46870 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47058 * 299.99795 * 9 7 5 13 13 N 1.46903 * 109.46947 * 68.51590 * 3 2 1 14 14 C 1.46897 * 110.99810 * 254.02196 * 13 3 2 15 15 C 1.53007 * 115.54906 * 318.38719 * 14 13 3 16 16 C 1.50696 * 109.47159 * 305.30322 * 15 14 13 17 17 C 1.38217 * 120.01407 * 284.24466 * 16 15 14 18 18 C 1.38220 * 120.02701 * 179.72560 * 17 16 15 19 19 C 1.38274 * 120.04830 * 0.54826 * 18 17 16 20 20 C 1.38172 * 120.02603 * 359.72815 * 19 18 17 21 21 C 1.38436 * 120.01207 * 104.51775 * 16 15 14 22 22 F 1.35102 * 120.02385 * 0.02562 * 21 16 15 23 23 C 1.52996 * 117.49960 * 172.72391 * 14 13 3 24 24 C 1.52997 * 117.50009 * 104.06494 * 14 13 3 25 25 H 1.09002 * 109.47320 * 285.67565 * 1 2 3 26 26 H 1.08993 * 109.47799 * 45.68556 * 1 2 3 27 27 H 1.09010 * 109.46628 * 165.68581 * 1 2 3 28 28 H 1.09002 * 109.47736 * 240.00242 * 2 1 3 29 29 H 1.09003 * 109.47476 * 120.00029 * 2 1 3 30 30 H 0.96999 * 120.00237 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99803 * 17.97084 * 13 3 2 32 32 H 1.09000 * 109.46650 * 65.30636 * 15 14 13 33 33 H 1.08997 * 109.46713 * 185.29936 * 15 14 13 34 34 H 1.07998 * 119.98903 * 359.97438 * 17 16 15 35 35 H 1.07995 * 119.97772 * 180.27604 * 18 17 16 36 36 H 1.08002 * 119.98657 * 179.74786 * 19 18 17 37 37 H 1.07995 * 120.01146 * 180.02562 * 20 19 18 38 38 H 1.09010 * 117.49662 * 359.97438 * 23 14 13 39 39 H 1.09002 * 117.50440 * 145.01438 * 23 14 13 40 40 H 1.09004 * 117.49485 * 214.97758 * 24 14 13 41 41 H 1.09002 * 117.50005 * 359.96835 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5576 1.9984 -0.8041 5 6 3.5321 1.4479 -0.2103 6 1 4.1849 1.8281 0.5614 7 6 4.0640 0.9672 -1.3881 8 7 3.2676 0.6123 -2.3727 9 14 5.9157 0.8202 -1.5853 10 1 6.4526 -0.0973 -0.5484 11 1 6.2287 0.2808 -2.9330 12 1 6.5378 2.1598 -1.4310 13 7 1.7248 2.0733 1.2888 14 6 0.6173 3.0284 1.1507 15 6 0.6580 3.9097 -0.0995 16 6 1.9810 4.6283 -0.1647 17 6 2.2224 5.7088 0.6627 18 6 3.4378 6.3646 0.6071 19 6 4.4094 5.9476 -0.2840 20 6 4.1682 4.8712 -1.1161 21 6 2.9529 4.2099 -1.0573 22 9 2.7158 3.1576 -1.8707 23 6 0.0525 3.6453 2.4317 24 6 -0.7569 2.5960 1.6658 25 1 -0.3634 0.2777 0.9894 26 1 -0.3634 0.7178 -0.7352 27 1 -0.3633 -0.9959 -0.2541 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6418 0.2745 -3.2014 31 1 1.5176 1.3784 1.9903 32 1 0.5382 3.2876 -0.9865 33 1 -0.1503 4.6396 -0.0558 34 1 1.4625 6.0384 1.3557 35 1 3.6272 7.2060 1.2571 36 1 5.3573 6.4633 -0.3295 37 1 4.9274 4.5455 -1.8118 38 1 0.5025 3.3422 3.3772 39 1 -0.2904 4.6789 2.3840 40 1 -1.6321 2.9396 1.1143 41 1 -0.8393 1.6025 2.1068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = 3.560819 kcal Electronic energy + Delta-G solvation = -23376.178052 eV Core-core repulsion = 20171.086909 eV Total energy + Delta-G solvation = -3205.091143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.19914 -40.31060 -38.96237 -36.33908 -33.64081 -33.15462 -31.40122 -31.02248 -28.05694 -27.91078 -24.52893 -23.52972 -23.07754 -22.46750 -21.56662 -20.13811 -18.31420 -17.90620 -17.20606 -16.71301 -16.49961 -16.14308 -15.90079 -15.66418 -15.15358 -14.89027 -14.69732 -14.30674 -14.04690 -13.74049 -13.38299 -13.23208 -13.06500 -12.82967 -12.73130 -12.58096 -12.47255 -12.39426 -12.29124 -11.94608 -11.89332 -11.56331 -11.37713 -11.19400 -10.85661 -10.62112 -10.15046 -9.57660 -9.09571 -8.56771 -7.90305 -5.90709 0.56168 0.64007 1.37503 1.39905 1.45070 2.50988 2.91953 3.10411 3.39615 3.68170 3.87120 3.93028 4.03607 4.11012 4.19428 4.32181 4.41476 4.50874 4.58073 4.62261 4.69927 4.75576 4.85545 4.88952 4.97424 4.99352 5.11056 5.23442 5.27449 5.37308 5.40899 5.46623 5.50310 5.62993 5.69400 5.73968 5.75325 5.90819 5.93996 6.34824 6.49570 6.90808 7.02842 7.15920 7.72387 9.14371 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.011198 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.268501 B = 2499.797185 C = 3975.454232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.212 3.788 4 H 0.049 0.951 5 C -0.481 4.481 6 H 0.030 0.970 7 C 0.038 3.962 8 N -0.903 5.903 9 Si 0.912 3.088 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.651 5.651 14 C 0.060 3.940 15 C -0.036 4.036 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.190 4.190 21 C 0.117 3.883 22 F -0.117 7.117 23 C -0.157 4.157 24 C -0.215 4.215 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.251 0.749 31 H 0.324 0.676 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 10.298 6.793 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 C 0.105 3.895 4 H 0.067 0.933 5 C -0.520 4.520 6 H 0.049 0.951 7 C -0.161 4.161 8 N -0.543 5.543 9 Si 0.740 3.260 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.202 1.202 13 N -0.279 5.279 14 C -0.033 4.033 15 C -0.073 4.073 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.161 4.161 19 C -0.119 4.119 20 C -0.209 4.209 21 C 0.098 3.902 22 F -0.095 7.095 23 C -0.195 4.195 24 C -0.255 4.255 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.490 10.650 6.494 13.628 hybrid contribution 0.750 -1.694 -0.845 2.036 sum -4.740 8.955 5.648 11.601 Atomic orbital electron populations 1.21800 0.96339 1.00052 1.00937 1.22038 0.94491 1.01531 0.99811 1.19428 0.94090 0.89084 0.86938 0.93324 1.21081 0.92796 1.38578 0.99572 0.95122 1.25160 0.98765 0.96251 0.95877 1.70002 1.34591 1.45376 1.04318 0.86344 0.84964 0.78192 0.76514 1.20696 1.21650 1.20223 1.60445 1.37333 1.20144 1.09932 1.21523 0.89173 0.97971 0.94667 1.20012 0.94275 0.96789 0.96227 1.19755 0.96266 0.98080 0.97235 1.21054 0.98207 0.93778 0.97107 1.21348 0.93281 1.01675 0.99797 1.21149 1.00378 0.95343 0.94996 1.21181 0.96219 0.99620 1.03848 1.17967 0.95050 0.85207 0.92001 1.91689 1.94289 1.53360 1.70150 1.23190 1.02235 0.98763 0.95309 1.23742 0.96537 0.99677 1.05555 0.92007 0.94572 0.93813 0.93133 0.95284 0.94006 0.85789 0.93091 0.88234 0.83308 0.82694 0.83716 0.87577 0.89051 0.86870 0.88233 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.05 71.98 0.65 -4.43 16 2 C -0.14 -6.48 5.13 30.60 0.16 -6.32 16 3 C 0.21 10.13 1.01 44.17 0.04 10.17 16 4 H 0.05 2.52 3.00 -2.39 -0.01 2.51 16 5 C -0.48 -26.20 6.29 25.60 0.16 -26.04 16 6 H 0.03 1.78 7.82 -2.91 -0.02 1.75 16 7 C 0.04 2.13 3.98 84.66 0.34 2.47 16 8 N -0.90 -51.89 10.88 21.45 0.23 -51.66 16 9 Si 0.91 45.19 29.54 68.60 2.03 47.22 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 13 N -0.65 -26.36 6.18 -452.08 -2.79 -29.15 16 14 C 0.06 1.94 1.85 3.53 0.01 1.95 16 15 C -0.04 -1.22 4.69 29.85 0.14 -1.08 16 16 C -0.11 -4.10 4.73 -19.82 -0.09 -4.19 16 17 C -0.08 -2.43 9.68 22.26 0.22 -2.21 16 18 C -0.14 -3.84 10.04 22.27 0.22 -3.62 16 19 C -0.10 -3.12 10.04 22.26 0.22 -2.89 16 20 C -0.19 -7.55 10.03 22.31 0.22 -7.33 16 21 C 0.12 5.10 5.54 22.38 0.12 5.22 16 22 F -0.12 -6.03 10.05 44.97 0.45 -5.58 16 23 C -0.16 -3.93 10.14 30.62 0.31 -3.62 16 24 C -0.22 -5.73 8.72 30.62 0.27 -5.46 16 25 H 0.06 2.03 5.41 -2.39 -0.01 2.02 16 26 H 0.04 1.42 7.96 -2.39 -0.02 1.40 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 2.71 6.41 -2.39 -0.02 2.70 16 29 H 0.03 1.31 7.97 -2.39 -0.02 1.30 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.32 12.56 7.92 -89.69 -0.71 11.85 16 32 H 0.05 2.08 5.79 -2.39 -0.01 2.07 16 33 H 0.10 2.67 8.09 -2.39 -0.02 2.65 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.09 2.42 6.43 -2.39 -0.02 2.40 16 Total: -1.00 -62.80 318.81 3.23 -59.57 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.32 Total: 26.97 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 2.99 Total: -47.37 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.56 Total: -80.81 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.45 Total: -5.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.80 3.23 -59.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.129 kcal (2) G-P(sol) polarization free energy of solvation -62.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds