Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 H 1.08995 * 109.47599 * 54.83993 * 3 2 1 5 5 C 1.50699 * 109.47066 * 174.84444 * 3 2 1 6 6 H 1.08004 * 119.99838 * 119.99806 * 5 3 2 7 7 C 1.37879 * 120.00247 * 299.71986 * 5 3 2 8 8 N 1.31508 * 119.99301 * 0.27853 * 7 5 3 9 9 Si 1.86797 * 120.00190 * 180.27727 * 7 5 3 10 10 H 1.48504 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47073 * 119.99829 * 9 7 5 12 12 H 1.48498 * 109.46933 * 240.00153 * 9 7 5 13 13 N 1.46903 * 109.46770 * 294.84099 * 3 2 1 14 14 C 1.46905 * 110.99879 * 152.15570 * 13 3 2 15 15 H 1.08999 * 109.47309 * 327.61546 * 14 13 3 16 16 C 1.50696 * 109.47338 * 207.61146 * 14 13 3 17 17 C 1.38268 * 119.98529 * 319.73207 * 16 14 13 18 18 C 1.38231 * 120.04560 * 179.72296 * 17 16 14 19 19 C 1.38215 * 120.02609 * 0.54566 * 18 17 16 20 20 C 1.38438 * 119.97486 * 359.72838 * 19 18 17 21 21 F 1.35096 * 120.02214 * 180.02562 * 20 19 18 22 22 C 1.38172 * 119.98637 * 140.00098 * 16 14 13 23 23 C 1.53007 * 109.46674 * 87.61242 * 14 13 3 24 24 C 1.53002 * 117.49900 * 248.62194 * 23 14 13 25 25 C 1.52994 * 117.49551 * 179.97438 * 23 14 13 26 26 H 1.08992 * 109.46900 * 175.32275 * 1 2 3 27 27 H 1.09004 * 109.47141 * 295.32537 * 1 2 3 28 28 H 1.08999 * 109.46679 * 55.32462 * 1 2 3 29 29 H 1.08996 * 109.47343 * 239.99460 * 2 1 3 30 30 H 1.09002 * 109.46977 * 119.99390 * 2 1 3 31 31 H 0.97003 * 119.99614 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00350 * 276.11589 * 13 3 2 33 33 H 1.07994 * 119.97808 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.98405 * 180.26841 * 18 17 16 35 35 H 1.08008 * 120.00994 * 179.74453 * 19 18 17 36 36 H 1.08004 * 120.01653 * 359.97438 * 22 16 14 37 37 H 1.09003 * 115.54880 * 34.33300 * 23 14 13 38 38 H 1.08996 * 117.49439 * 359.97438 * 24 23 14 39 39 H 1.08996 * 117.49478 * 145.02418 * 24 23 14 40 40 H 1.09000 * 117.50323 * 214.98024 * 25 23 14 41 41 H 1.09000 * 117.50113 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9824 0.8401 5 6 3.5416 1.4444 0.1277 6 1 4.1489 1.8883 -0.6474 7 6 4.1399 0.8846 1.2366 8 7 3.4004 0.3442 2.1802 9 14 6.0009 0.8939 1.3985 10 1 6.5978 1.5561 0.2109 11 1 6.3873 1.6353 2.6257 12 1 6.4969 -0.5030 1.4872 13 7 1.6547 2.0981 -1.2569 14 6 1.5097 3.5481 -1.0714 15 1 1.1537 3.7515 -0.0615 16 6 0.5186 4.0859 -2.0712 17 6 0.5220 3.6130 -3.3705 18 6 -0.3903 4.1012 -4.2871 19 6 -1.2995 5.0710 -3.9086 20 6 -1.3000 5.5493 -2.6095 21 9 -2.1886 6.4968 -2.2384 22 6 -0.3893 5.0553 -1.6906 23 6 2.8649 4.2270 -1.2809 24 6 3.5401 4.8490 -0.0569 25 6 2.9235 5.7484 -1.1308 26 1 -0.3633 -1.0242 -0.0838 27 1 -0.3634 0.4396 0.9289 28 1 -0.3633 0.5847 -0.8452 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8213 -0.0499 2.9602 32 1 2.3163 1.8916 -1.9901 33 1 1.2352 2.8587 -3.6684 34 1 -0.3896 3.7280 -5.3006 35 1 -2.0095 5.4553 -4.6261 36 1 -0.3892 5.4275 -0.6767 37 1 3.5080 3.7705 -2.0333 38 1 3.0187 4.7749 0.8974 39 1 4.6277 4.8017 -0.0039 40 1 3.6056 6.2927 -1.7838 41 1 1.9966 6.2658 -0.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -5.182834 kcal Electronic energy + Delta-G solvation = -21907.212855 eV Core-core repulsion = 18701.742558 eV Total energy + Delta-G solvation = -3205.470297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.73848 -39.37303 -37.24278 -35.31349 -32.69652 -31.46354 -30.58379 -29.75478 -26.73400 -24.71615 -22.79571 -22.43205 -21.91589 -21.67633 -19.86915 -19.47216 -17.10557 -16.46696 -16.10917 -15.93760 -15.49696 -15.27721 -14.77181 -14.23779 -13.97283 -13.62892 -13.41172 -13.09284 -12.86406 -12.25418 -12.11779 -11.97360 -11.56593 -11.40606 -11.16467 -11.09382 -11.07588 -10.89187 -10.80148 -10.69452 -10.29695 -9.92001 -9.73664 -9.57274 -9.32137 -9.03969 -8.73159 -8.39453 -8.37878 -7.36577 -6.00603 -4.11162 1.40528 1.43510 3.23995 3.33509 3.35158 3.82331 4.26023 4.38318 4.42751 4.83730 5.01394 5.15179 5.23879 5.27183 5.34896 5.48078 5.52534 5.58268 5.67145 5.95072 6.00360 6.07222 6.11224 6.26289 6.35084 6.39143 6.43339 6.51297 6.55181 6.58022 6.67220 6.70621 6.87891 7.10162 7.12239 7.17282 7.41431 7.56569 7.77635 8.05089 8.10601 8.28653 8.59348 8.99113 9.55619 11.00577 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.005378 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.086868 B = 5205.179609 C = 5876.480609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.031 0.969 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.676 5.676 14 C 0.160 3.840 15 H 0.081 0.919 16 C -0.016 4.016 17 C -0.105 4.105 18 C -0.096 4.096 19 C -0.169 4.169 20 C 0.092 3.908 21 F -0.147 7.147 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.194 4.194 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.259 0.741 32 H 0.331 0.669 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 8.002 -9.186 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.304 5.304 14 C 0.049 3.951 15 H 0.099 0.901 16 C -0.017 4.017 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.188 4.188 20 C 0.072 3.928 21 F -0.126 7.126 22 C -0.173 4.173 23 C -0.170 4.170 24 C -0.189 4.189 25 C -0.232 4.232 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.950 7.783 -8.891 13.230 hybrid contribution 1.900 0.392 0.383 1.977 sum -4.051 8.175 -8.508 12.475 Atomic orbital electron populations 1.21721 0.99096 0.98493 1.00346 1.21505 0.92020 0.99272 1.01665 1.19199 0.93199 0.91102 0.85470 0.95106 1.21829 0.92356 1.37592 1.05238 0.92564 1.24890 0.97497 0.95197 0.95878 1.69883 1.34561 1.38711 1.09377 0.86679 0.86570 0.77663 0.77891 1.19991 1.21179 1.21149 1.60991 1.53438 1.04978 1.11038 1.20011 0.89609 0.89489 0.95995 0.90077 1.19899 0.94217 0.92709 0.94834 1.21035 0.99078 0.99574 0.92664 1.20968 0.94756 0.95921 0.99723 1.20992 1.02268 1.00737 0.94781 1.17642 0.90663 0.90451 0.94002 1.91460 1.66635 1.62353 1.92174 1.20987 0.96774 0.99807 0.99736 1.22916 0.98783 0.93823 1.01468 1.22793 0.99856 1.02393 0.93821 1.22968 1.02671 0.93568 1.04013 0.95708 0.94646 0.93128 0.95115 0.89159 0.93045 0.85174 0.85321 0.85575 0.85567 0.85349 0.88254 0.88879 0.89444 0.89781 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.86 37.16 0.37 -2.44 16 2 C -0.11 -2.43 5.45 -26.73 -0.15 -2.57 16 3 C 0.22 4.97 1.98 -68.86 -0.14 4.83 16 4 H 0.03 0.80 7.34 -51.93 -0.38 0.41 16 5 C -0.53 -13.10 7.87 -34.44 -0.27 -13.37 16 6 H 0.06 1.38 7.19 -52.48 -0.38 1.00 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.13 11.30 55.43 0.63 -23.50 16 9 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -12.76 4.85 -102.16 -0.50 -13.25 16 14 C 0.16 2.72 2.42 -68.86 -0.17 2.55 16 15 H 0.08 1.52 6.96 -51.93 -0.36 1.16 16 16 C -0.02 -0.24 4.60 -104.64 -0.48 -0.72 16 17 C -0.11 -1.44 9.32 -39.57 -0.37 -1.81 16 18 C -0.10 -1.15 10.04 -39.59 -0.40 -1.54 16 19 C -0.17 -2.09 10.03 -39.52 -0.40 -2.49 16 20 C 0.09 1.28 7.30 -39.42 -0.29 1.00 16 21 F -0.15 -2.11 17.27 2.25 0.04 -2.07 16 22 C -0.15 -2.25 9.19 -39.52 -0.36 -2.61 16 23 C -0.15 -2.44 4.02 -90.62 -0.36 -2.80 16 24 C -0.15 -2.52 10.18 -26.70 -0.27 -2.79 16 25 C -0.19 -2.79 9.87 -26.71 -0.26 -3.06 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.99 7.63 -51.93 -0.40 0.59 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.33 5.96 -51.93 -0.31 2.03 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.33 6.13 7.38 -39.29 -0.29 5.84 16 33 H 0.13 1.70 7.34 -52.49 -0.39 1.31 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.13 1.78 8.04 -52.48 -0.42 1.36 16 37 H 0.10 1.65 7.90 -51.93 -0.41 1.24 16 38 H 0.09 1.63 8.05 -51.93 -0.42 1.22 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.22 7.67 -51.93 -0.40 0.82 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -25.87 338.31 -9.64 -35.51 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.24 Total: 9.00 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.64 Total: -26.18 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.13 Total: -36.76 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -25.87 -9.64 -35.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.331 kcal (2) G-P(sol) polarization free energy of solvation -25.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds