Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 H 1.08995 * 109.47599 * 54.83993 * 3 2 1 5 5 C 1.50699 * 109.47066 * 174.84444 * 3 2 1 6 6 H 1.08004 * 119.99838 * 119.99806 * 5 3 2 7 7 C 1.37879 * 120.00247 * 299.71986 * 5 3 2 8 8 N 1.31508 * 119.99301 * 0.27853 * 7 5 3 9 9 Si 1.86797 * 120.00190 * 180.27727 * 7 5 3 10 10 H 1.48504 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47073 * 119.99829 * 9 7 5 12 12 H 1.48498 * 109.46933 * 240.00153 * 9 7 5 13 13 N 1.46903 * 109.46770 * 294.84099 * 3 2 1 14 14 C 1.46905 * 110.99879 * 152.15570 * 13 3 2 15 15 H 1.08999 * 109.47309 * 327.61546 * 14 13 3 16 16 C 1.50696 * 109.47338 * 207.61146 * 14 13 3 17 17 C 1.38268 * 119.98529 * 319.73207 * 16 14 13 18 18 C 1.38231 * 120.04560 * 179.72296 * 17 16 14 19 19 C 1.38215 * 120.02609 * 0.54566 * 18 17 16 20 20 C 1.38438 * 119.97486 * 359.72838 * 19 18 17 21 21 F 1.35096 * 120.02214 * 180.02562 * 20 19 18 22 22 C 1.38172 * 119.98637 * 140.00098 * 16 14 13 23 23 C 1.53007 * 109.46674 * 87.61242 * 14 13 3 24 24 C 1.53002 * 117.49900 * 248.62194 * 23 14 13 25 25 C 1.52994 * 117.49551 * 179.97438 * 23 14 13 26 26 H 1.08992 * 109.46900 * 175.32275 * 1 2 3 27 27 H 1.09004 * 109.47141 * 295.32537 * 1 2 3 28 28 H 1.08999 * 109.46679 * 55.32462 * 1 2 3 29 29 H 1.08996 * 109.47343 * 239.99460 * 2 1 3 30 30 H 1.09002 * 109.46977 * 119.99390 * 2 1 3 31 31 H 0.97003 * 119.99614 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00350 * 276.11589 * 13 3 2 33 33 H 1.07994 * 119.97808 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.98405 * 180.26841 * 18 17 16 35 35 H 1.08008 * 120.00994 * 179.74453 * 19 18 17 36 36 H 1.08004 * 120.01653 * 359.97438 * 22 16 14 37 37 H 1.09003 * 115.54880 * 34.33300 * 23 14 13 38 38 H 1.08996 * 117.49439 * 359.97438 * 24 23 14 39 39 H 1.08996 * 117.49478 * 145.02418 * 24 23 14 40 40 H 1.09000 * 117.50323 * 214.98024 * 25 23 14 41 41 H 1.09000 * 117.50113 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9824 0.8401 5 6 3.5416 1.4444 0.1277 6 1 4.1489 1.8883 -0.6474 7 6 4.1399 0.8846 1.2366 8 7 3.4004 0.3442 2.1802 9 14 6.0009 0.8939 1.3985 10 1 6.5978 1.5561 0.2109 11 1 6.3873 1.6353 2.6257 12 1 6.4969 -0.5030 1.4872 13 7 1.6547 2.0981 -1.2569 14 6 1.5097 3.5481 -1.0714 15 1 1.1537 3.7515 -0.0615 16 6 0.5186 4.0859 -2.0712 17 6 0.5220 3.6130 -3.3705 18 6 -0.3903 4.1012 -4.2871 19 6 -1.2995 5.0710 -3.9086 20 6 -1.3000 5.5493 -2.6095 21 9 -2.1886 6.4968 -2.2384 22 6 -0.3893 5.0553 -1.6906 23 6 2.8649 4.2270 -1.2809 24 6 3.5401 4.8490 -0.0569 25 6 2.9235 5.7484 -1.1308 26 1 -0.3633 -1.0242 -0.0838 27 1 -0.3634 0.4396 0.9289 28 1 -0.3633 0.5847 -0.8452 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8213 -0.0499 2.9602 32 1 2.3163 1.8916 -1.9901 33 1 1.2352 2.8587 -3.6684 34 1 -0.3896 3.7280 -5.3006 35 1 -2.0095 5.4553 -4.6261 36 1 -0.3892 5.4275 -0.6767 37 1 3.5080 3.7705 -2.0333 38 1 3.0187 4.7749 0.8974 39 1 4.6277 4.8017 -0.0039 40 1 3.6056 6.2927 -1.7838 41 1 1.9966 6.2658 -0.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -16.302358 kcal Electronic energy + Delta-G solvation = -21907.695033 eV Core-core repulsion = 18701.742558 eV Total energy + Delta-G solvation = -3205.952475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.82183 -40.57361 -38.53021 -36.95172 -34.32992 -33.13428 -31.78809 -31.00992 -28.43637 -26.26672 -24.42106 -23.57082 -23.18663 -22.92525 -21.36517 -21.07997 -18.58383 -18.00299 -17.31254 -16.99723 -16.71101 -16.62781 -16.46041 -15.66527 -15.30682 -15.11859 -14.72838 -14.55624 -14.24480 -13.69573 -13.47986 -13.22528 -13.15842 -13.07436 -12.86669 -12.63767 -12.53846 -12.35055 -12.19219 -12.05404 -12.00523 -11.48595 -11.46442 -11.19540 -10.94102 -10.67478 -10.38087 -9.80297 -9.47207 -9.00627 -7.98165 -6.15367 0.34425 0.39054 1.38307 1.43057 1.50389 2.44827 2.75889 3.00221 3.22716 3.30542 3.65966 3.90809 3.99817 4.01592 4.17885 4.25779 4.27748 4.42437 4.54966 4.62065 4.68967 4.76757 4.81287 4.82798 4.97498 5.04010 5.09755 5.22782 5.24255 5.27106 5.30077 5.34315 5.45202 5.52323 5.60036 5.66814 5.75380 5.84845 6.07831 6.18297 6.26743 6.45411 6.87415 7.10219 7.54470 9.00009 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.005378 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.086868 B = 5205.179609 C = 5876.480609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.228 3.772 4 H -0.005 1.005 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.917 5.917 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.667 5.667 14 C 0.167 3.833 15 H 0.054 0.946 16 C -0.029 4.029 17 C -0.111 4.111 18 C -0.086 4.086 19 C -0.161 4.161 20 C 0.079 3.921 21 F -0.152 7.152 22 C -0.164 4.164 23 C -0.157 4.157 24 C -0.171 4.171 25 C -0.163 4.163 26 H 0.043 0.957 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.336 0.664 33 H 0.134 0.866 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 8.719 -11.801 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.013 0.987 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.557 5.557 9 Si 0.766 3.234 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.295 5.295 14 C 0.056 3.944 15 H 0.072 0.928 16 C -0.029 4.029 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.179 4.179 20 C 0.060 3.940 21 F -0.131 7.131 22 C -0.184 4.184 23 C -0.177 4.177 24 C -0.208 4.208 25 C -0.201 4.201 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.202 8.515 -11.524 15.613 hybrid contribution 1.927 0.209 1.161 2.259 sum -4.275 8.724 -10.363 14.205 Atomic orbital electron populations 1.21575 0.96921 0.99759 1.00136 1.21372 0.93953 0.98745 1.00088 1.18911 0.92034 0.91092 0.86019 0.98723 1.22085 0.93411 1.36281 1.04777 0.92393 1.25538 1.00922 0.95426 0.95972 1.70018 1.35881 1.39920 1.09868 0.85811 0.82533 0.77318 0.77758 1.19143 1.21543 1.21307 1.60887 1.53081 1.06322 1.09188 1.19851 0.90722 0.88316 0.95475 0.92775 1.19646 0.94431 0.93779 0.95093 1.21183 0.99744 0.99690 0.92295 1.21310 0.93311 0.94918 1.00819 1.21343 1.02298 0.99980 0.94322 1.17804 0.90685 0.90780 0.94747 1.91449 1.66721 1.62552 1.92334 1.20987 0.97255 1.00174 0.99963 1.22860 0.98239 0.95498 1.01087 1.22746 0.99627 1.04841 0.93620 1.22981 1.02703 0.92333 1.02060 0.93820 0.95623 0.92305 0.94997 0.92271 0.93369 0.84655 0.84841 0.82158 0.82901 0.85798 0.88177 0.90787 0.89643 0.87708 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.86 71.98 0.71 -4.35 16 2 C -0.10 -4.77 5.45 30.60 0.17 -4.60 16 3 C 0.23 10.64 1.98 44.17 0.09 10.73 16 4 H -0.01 -0.28 7.34 -2.39 -0.02 -0.30 16 5 C -0.53 -26.30 7.87 25.60 0.20 -26.10 16 6 H 0.06 2.83 7.19 -2.91 -0.02 2.81 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.92 -51.36 11.30 21.45 0.24 -51.12 16 9 Si 0.94 42.34 29.54 68.60 2.03 44.36 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.67 -25.12 4.85 -477.14 -2.31 -27.44 16 14 C 0.17 5.71 2.42 44.17 0.11 5.82 16 15 H 0.05 2.13 6.96 -2.39 -0.02 2.12 16 16 C -0.03 -0.83 4.60 -19.87 -0.09 -0.93 16 17 C -0.11 -2.77 9.32 22.28 0.21 -2.56 16 18 C -0.09 -1.73 10.04 22.26 0.22 -1.50 16 19 C -0.16 -3.42 10.03 22.31 0.22 -3.20 16 20 C 0.08 2.06 7.30 22.38 0.16 2.23 16 21 F -0.15 -4.12 17.27 44.97 0.78 -3.34 16 22 C -0.16 -4.68 9.19 22.31 0.20 -4.48 16 23 C -0.16 -5.04 4.02 -10.79 -0.04 -5.08 16 24 C -0.17 -5.75 10.18 30.61 0.31 -5.44 16 25 C -0.16 -4.48 9.87 30.61 0.30 -4.18 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 2.24 7.63 -2.39 -0.02 2.22 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 3.14 5.96 -2.39 -0.01 3.13 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.34 12.17 7.38 -89.70 -0.66 11.51 16 33 H 0.13 3.18 7.34 -2.91 -0.02 3.16 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.12 3.51 8.04 -2.91 -0.02 3.49 16 37 H 0.10 3.21 7.90 -2.39 -0.02 3.19 16 38 H 0.07 2.74 8.05 -2.39 -0.02 2.72 16 39 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 2.47 7.67 -2.39 -0.02 2.45 16 Total: -1.00 -56.05 338.31 4.31 -51.74 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.36 Total: 27.90 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 3.22 Total: -42.11 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.07 Total: -78.55 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.34 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -56.05 4.31 -51.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.440 kcal (2) G-P(sol) polarization free energy of solvation -56.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds