Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47496 * 2 1 4 4 H 1.08994 * 109.47370 * 177.55306 * 3 2 1 5 5 C 1.50707 * 109.46720 * 57.54995 * 3 2 1 6 6 H 1.07996 * 119.99798 * 240.00409 * 5 3 2 7 7 C 1.37871 * 119.99693 * 60.00349 * 5 3 2 8 8 N 1.31514 * 120.00246 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00006 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46708 * 59.99950 * 9 7 5 11 11 H 1.48496 * 109.47367 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47247 * 300.00279 * 9 7 5 13 13 N 1.46900 * 109.47126 * 297.55692 * 3 2 1 14 14 C 1.46899 * 110.99680 * 274.33755 * 13 3 2 15 15 H 1.08995 * 109.68485 * 35.41428 * 14 13 3 16 16 C 1.53330 * 109.68421 * 155.96834 * 14 13 3 17 17 C 1.52733 * 108.38206 * 189.61279 * 16 14 13 18 18 C 1.50639 * 110.58939 * 308.89328 * 17 16 14 19 19 C 1.38931 * 117.72345 * 197.54507 * 18 17 16 20 20 C 1.37894 * 120.58347 * 180.39306 * 19 18 17 21 21 C 1.38482 * 119.74502 * 359.92886 * 20 19 18 22 22 F 1.35099 * 120.14541 * 179.97438 * 21 20 19 23 23 C 1.38155 * 119.71552 * 359.91841 * 21 20 19 24 24 C 1.37672 * 122.55862 * 17.72257 * 18 17 16 25 25 C 1.50645 * 122.56355 * 359.37060 * 24 18 17 26 26 H 1.08997 * 109.47117 * 294.51744 * 1 2 3 27 27 H 1.08999 * 109.46965 * 54.51616 * 1 2 3 28 28 H 1.09001 * 109.46939 * 174.51810 * 1 2 3 29 29 H 1.09007 * 109.46856 * 240.00083 * 2 1 3 30 30 H 1.08998 * 109.47661 * 120.00438 * 2 1 3 31 31 H 0.97004 * 119.99913 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00697 * 150.38204 * 13 3 2 33 33 H 1.08998 * 109.67938 * 309.33972 * 16 14 13 34 34 H 1.09009 * 109.67906 * 69.85014 * 16 14 13 35 35 H 1.09000 * 109.25157 * 69.18349 * 17 16 14 36 36 H 1.09001 * 109.25252 * 188.60889 * 17 16 14 37 37 H 1.08006 * 119.70973 * 0.37628 * 19 18 17 38 38 H 1.08003 * 120.12551 * 179.91636 * 20 19 18 39 39 H 1.07996 * 119.73941 * 180.36302 * 23 21 20 40 40 H 1.09000 * 109.24909 * 137.99429 * 25 24 18 41 41 H 1.09000 * 109.25242 * 257.42052 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0439 5 6 1.4887 2.1702 1.1990 6 1 0.8726 3.0466 1.0625 7 6 1.7710 1.7170 2.4702 8 7 2.5218 0.6501 2.6364 9 14 1.0882 2.6194 3.9565 10 1 -0.3956 2.6195 3.8968 11 1 1.5342 1.9371 5.1978 12 1 1.5837 4.0193 3.9564 13 7 1.5993 2.1178 -1.2279 14 6 2.5366 1.8686 -2.3311 15 1 2.9344 0.8568 -2.2536 16 6 1.8128 2.0383 -3.6721 17 6 2.7357 1.5430 -4.7837 18 6 4.0953 2.1813 -4.6671 19 6 4.9258 2.1410 -5.7801 20 6 6.1856 2.6998 -5.7360 21 6 6.6271 3.3081 -4.5729 22 9 7.8601 3.8577 -4.5206 23 6 5.8008 3.3514 -3.4666 24 6 4.5320 2.7885 -3.5113 25 6 3.6817 2.8775 -2.2710 26 1 -0.3633 0.4264 0.9350 27 1 -0.3633 0.5965 -0.8368 28 1 -0.3633 -1.0230 -0.0982 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.7200 0.3311 3.5308 32 1 1.4781 3.1074 -1.0728 33 1 0.8936 1.4525 -3.6698 34 1 1.5770 3.0906 -3.8314 35 1 2.8392 0.4605 -4.7093 36 1 2.3016 1.7963 -5.7509 37 1 4.5817 1.6675 -6.6878 38 1 6.8256 2.6630 -6.6052 39 1 6.1425 3.8309 -2.5612 40 1 4.2985 2.6694 -1.3967 41 1 3.2704 3.8836 -2.1887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -43.425129 kcal Electronic energy + Delta-G solvation = -21548.891659 eV Core-core repulsion = 18341.763052 eV Total energy + Delta-G solvation = -3207.128607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.87768 -39.96427 -37.03504 -34.74783 -32.67508 -31.89256 -30.58328 -29.01557 -27.85358 -25.73556 -23.52947 -23.00671 -22.40048 -21.97584 -19.51866 -18.90342 -17.17347 -16.61295 -16.20021 -15.70851 -15.54357 -14.88194 -14.40285 -14.31171 -13.90234 -13.73984 -13.54711 -13.13553 -12.88672 -12.83290 -12.55558 -12.23809 -11.96577 -11.75514 -11.41357 -11.18361 -11.00808 -10.90860 -10.70506 -10.47894 -10.42286 -10.27075 -9.98573 -9.64568 -9.35737 -8.86613 -8.78965 -8.48808 -8.40237 -7.25459 -6.02541 -4.07934 1.15688 1.21459 3.29843 3.35131 3.37422 3.54700 4.24015 4.39094 4.64044 4.71244 4.89623 5.09672 5.13033 5.15387 5.29219 5.36202 5.44952 5.67856 5.70801 5.78545 5.90192 5.99226 6.08854 6.09881 6.17351 6.22607 6.32345 6.53249 6.57558 6.62145 6.69580 6.71611 6.86430 6.93208 7.23665 7.33032 7.50429 7.73406 7.79465 7.84274 8.25410 8.38419 8.66062 9.01298 9.56983 11.03361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.004368 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.418965 B = 6408.100959 C = 7221.878094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.092 3.908 15 H 0.075 0.925 16 C -0.108 4.108 17 C -0.079 4.079 18 C -0.084 4.084 19 C -0.094 4.094 20 C -0.162 4.162 21 C 0.090 3.910 22 F -0.145 7.145 23 C -0.156 4.156 24 C -0.032 4.032 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.084 0.916 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 2.604 -15.208 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.020 4.020 15 H 0.093 0.907 16 C -0.146 4.146 17 C -0.116 4.116 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.181 4.181 21 C 0.071 3.929 22 F -0.123 7.123 23 C -0.175 4.175 24 C -0.032 4.032 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.099 0.901 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.295 1.988 -15.204 15.683 hybrid contribution 0.893 1.141 1.168 1.861 sum 4.188 3.129 -14.036 14.978 Atomic orbital electron populations 1.21433 0.97516 0.97069 1.01566 1.21434 0.95098 0.98294 0.99214 1.19125 0.93365 0.91570 0.85080 0.98106 1.21141 1.31703 1.11974 0.90402 0.92416 1.24867 0.95073 0.94991 0.98800 1.69878 1.37427 1.23148 1.22262 0.86666 0.79490 0.79761 0.82112 1.20220 1.21383 1.20429 1.60800 1.46516 1.15953 1.07465 1.21511 0.90218 0.97910 0.92318 0.90712 1.21574 0.98334 1.01290 0.93400 1.20500 0.91268 1.00092 0.99765 1.19792 0.96931 0.98960 0.92778 1.21008 0.92954 0.98802 0.98441 1.20985 0.97848 1.01949 0.97332 1.17596 0.80940 0.98764 0.95610 1.91476 1.40182 1.83648 1.97040 1.21235 0.94640 1.03330 0.98278 1.19616 0.93289 0.95022 0.95316 1.21406 0.98031 1.01417 0.94324 0.92980 0.93439 0.96950 0.97201 0.89784 0.92926 0.85141 0.90545 0.92225 0.90478 0.90899 0.85309 0.85154 0.84952 0.90140 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.45 37.16 0.35 -2.25 16 2 C -0.10 -2.40 5.55 -26.73 -0.15 -2.55 16 3 C 0.22 5.10 2.12 -68.86 -0.15 4.96 16 4 H 0.00 0.03 7.21 -51.93 -0.37 -0.34 16 5 C -0.51 -13.29 7.31 -34.44 -0.25 -13.54 16 6 H 0.06 1.48 7.61 -52.49 -0.40 1.08 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.67 11.35 55.43 0.63 -24.04 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.18 5.32 -100.92 -0.54 -13.71 16 14 C 0.09 1.50 2.29 -67.68 -0.15 1.35 16 15 H 0.07 1.36 7.13 -51.93 -0.37 0.99 16 16 C -0.11 -1.45 5.60 -26.70 -0.15 -1.60 16 17 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 18 C -0.08 -1.06 5.74 -104.60 -0.60 -1.66 16 19 C -0.09 -1.03 9.60 -39.45 -0.38 -1.41 16 20 C -0.16 -1.86 10.03 -39.62 -0.40 -2.25 16 21 C 0.09 1.19 7.30 -39.52 -0.29 0.91 16 22 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 23 C -0.16 -2.15 9.59 -39.37 -0.38 -2.53 16 24 C -0.03 -0.44 5.74 -104.62 -0.60 -1.04 16 25 C -0.11 -1.74 4.97 -28.05 -0.14 -1.88 16 26 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 27 H 0.05 1.00 7.52 -51.93 -0.39 0.61 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.01 0.21 7.45 -51.93 -0.39 -0.18 16 30 H 0.08 2.22 6.14 -51.93 -0.32 1.90 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.33 6.35 7.83 -39.29 -0.31 6.04 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.78 8.10 -51.92 -0.42 0.36 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.13 1.07 8.05 -52.48 -0.42 0.65 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.13 1.73 8.05 -52.49 -0.42 1.31 16 40 H 0.08 1.38 7.56 -51.93 -0.39 0.99 16 41 H 0.08 1.17 7.94 -51.93 -0.41 0.75 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -27.01 327.92 -9.73 -36.74 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.25 Total: 5.19 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.53 Total: -22.95 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.09 Total: -37.75 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.01 -9.73 -36.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.688 kcal (2) G-P(sol) polarization free energy of solvation -27.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds