Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 H 1.09001 * 109.47458 * 185.14979 * 3 2 1 5 5 C 1.50706 * 109.47223 * 305.14896 * 3 2 1 6 6 H 1.08002 * 119.99499 * 119.99920 * 5 3 2 7 7 C 1.37868 * 119.99883 * 299.99953 * 5 3 2 8 8 N 1.31515 * 120.00208 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46988 * 89.99919 * 9 7 5 11 11 H 1.48491 * 109.47271 * 209.99816 * 9 7 5 12 12 H 1.48500 * 109.46902 * 330.00391 * 9 7 5 13 13 N 1.46905 * 109.47193 * 65.14905 * 3 2 1 14 14 C 1.46898 * 111.00216 * 85.96036 * 13 3 2 15 15 H 1.09004 * 109.67668 * 325.85740 * 14 13 3 16 16 C 1.53323 * 109.68200 * 205.29861 * 14 13 3 17 17 C 1.52734 * 108.39947 * 170.42447 * 16 14 13 18 18 C 1.50640 * 110.59742 * 51.07993 * 17 16 14 19 19 C 1.38933 * 117.72347 * 162.55880 * 18 17 16 20 20 C 1.37889 * 120.57833 * 179.37300 * 19 18 17 21 21 C 1.38485 * 119.75068 * 0.29407 * 20 19 18 22 22 F 1.35098 * 120.14614 * 179.84040 * 21 20 19 23 23 C 1.38162 * 119.71165 * 359.56384 * 21 20 19 24 24 C 1.37675 * 122.55659 * 342.17541 * 18 17 16 25 25 C 1.50640 * 122.55859 * 0.86393 * 24 18 17 26 26 H 1.09008 * 109.47053 * 174.58501 * 1 2 3 27 27 H 1.08998 * 109.47281 * 294.58395 * 1 2 3 28 28 H 1.08998 * 109.47177 * 54.58692 * 1 2 3 29 29 H 1.09005 * 109.47210 * 240.00486 * 2 1 3 30 30 H 1.09003 * 109.47264 * 120.00402 * 2 1 3 31 31 H 0.97004 * 120.00052 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99352 * 322.00600 * 13 3 2 33 33 H 1.08994 * 109.67638 * 290.14629 * 16 14 13 34 34 H 1.09000 * 109.68314 * 50.69847 * 16 14 13 35 35 H 1.08993 * 109.25165 * 290.79305 * 17 16 14 36 36 H 1.08996 * 109.24785 * 171.37154 * 17 16 14 37 37 H 1.08004 * 119.70887 * 359.39447 * 19 18 17 38 38 H 1.08001 * 120.12183 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.73376 * 180.26733 * 23 21 20 40 40 H 1.09001 * 109.25488 * 102.36276 * 25 24 18 41 41 H 1.08997 * 109.25557 * 221.79313 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0922 5 6 1.4362 2.1888 -1.1618 6 1 0.8271 3.0627 -0.9842 7 6 1.6616 1.7558 -2.4512 8 7 2.4038 0.6919 -2.6674 9 14 0.9127 2.6804 -3.8912 10 1 1.8540 3.7354 -4.3455 11 1 0.6539 1.7344 -5.0062 12 1 -0.3651 3.3067 -3.4666 13 7 1.6544 2.0982 1.2568 14 6 2.6435 1.8380 2.3113 15 1 3.0577 0.8375 2.1872 16 6 1.9750 1.9542 3.6863 17 6 2.9549 1.4485 4.7430 18 6 4.2950 2.1187 4.5871 19 6 5.1742 2.0636 5.6614 20 6 6.4212 2.6461 5.5779 21 6 6.7991 3.2972 4.4156 22 9 8.0178 3.8734 4.3263 23 6 5.9267 3.3499 3.3456 24 6 4.6700 2.7651 3.4307 25 6 3.7643 2.8724 2.2318 26 1 -0.3633 -1.0232 -0.0970 27 1 -0.3634 0.4275 0.9345 28 1 -0.3633 0.5955 -0.8375 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.5626 0.3875 -3.5746 32 1 0.7321 1.8097 1.5469 33 1 1.7253 2.9962 3.8860 34 1 1.0689 1.3487 3.7063 35 1 3.0771 0.3710 4.6335 36 1 2.5577 1.6656 5.7345 37 1 4.8784 1.5598 6.5698 38 1 7.0989 2.5985 6.4175 39 1 6.2227 3.8539 2.4374 40 1 3.3297 3.8714 2.1978 41 1 4.3460 2.7031 1.3256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = -41.622059 kcal Electronic energy + Delta-G solvation = -21544.761653 eV Core-core repulsion = 18337.711233 eV Total energy + Delta-G solvation = -3207.050420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.85248 -39.93809 -37.13344 -34.85828 -32.59290 -31.96252 -30.54486 -28.94163 -27.80964 -25.93025 -23.64702 -22.94202 -22.39988 -21.97193 -19.50440 -18.99815 -17.11946 -16.44302 -16.08861 -15.77167 -15.53339 -14.99015 -14.75644 -14.33671 -13.75697 -13.60283 -13.48732 -13.08777 -12.92835 -12.73391 -12.59290 -12.36151 -12.22784 -11.71957 -11.48832 -11.20115 -11.00171 -10.87851 -10.74097 -10.53433 -10.45976 -10.26007 -9.93591 -9.68436 -9.52981 -8.95742 -8.82119 -8.38801 -8.33108 -7.23664 -5.97078 -3.98549 1.17659 1.24937 3.32872 3.39795 3.43137 3.57508 4.25512 4.43886 4.62537 4.72246 4.91526 5.05624 5.11857 5.16405 5.33453 5.34872 5.47134 5.68236 5.78369 5.79307 5.92876 5.95892 6.03246 6.13770 6.20623 6.23101 6.33477 6.36534 6.38296 6.49496 6.56742 6.64643 6.75531 6.89341 6.97128 7.28267 7.30733 7.51568 7.71023 7.90235 8.29746 8.55449 8.63170 9.07432 9.65316 11.09904 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.004357 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.099781 B = 6425.196928 C = 7245.227365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.090 3.910 15 H 0.040 0.960 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.088 4.088 19 C -0.093 4.093 20 C -0.164 4.164 21 C 0.091 3.909 22 F -0.145 7.145 23 C -0.155 4.155 24 C -0.031 4.031 25 C -0.073 4.073 26 H 0.022 0.978 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.010 0.990 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 1.220 15.559 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.058 0.942 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.088 4.088 19 C -0.112 4.112 20 C -0.183 4.183 21 C 0.072 3.928 22 F -0.123 7.123 23 C -0.174 4.174 24 C -0.032 4.032 25 C -0.110 4.110 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.866 1.745 15.213 15.793 hybrid contribution -0.126 -0.446 -0.670 0.815 sum 3.740 1.299 14.542 15.072 Atomic orbital electron populations 1.21595 0.97704 0.98671 1.00731 1.22104 0.94983 1.01230 1.00186 1.19240 0.95886 0.88494 0.85596 0.94967 1.21067 1.30482 1.11441 0.89670 0.92043 1.24907 0.95575 0.95136 0.98723 1.69883 1.39065 1.23992 1.20653 0.86596 0.79619 0.79542 0.82221 1.20856 1.21509 1.19955 1.60803 1.03514 1.63356 1.03533 1.21339 0.93543 0.96349 0.90818 0.94203 1.21766 0.97632 1.01947 0.94528 1.20449 0.91507 0.99726 0.99673 1.19740 0.96721 0.99178 0.93211 1.20983 0.92756 0.98841 0.98572 1.20966 0.98267 1.01660 0.97385 1.17600 0.81311 0.98081 0.95792 1.91476 1.41485 1.82608 1.96759 1.21217 0.94161 1.03282 0.98726 1.19728 0.93597 0.94519 0.95328 1.20563 0.95278 1.01226 0.93952 0.95841 0.95432 0.91206 0.88980 0.97159 0.93152 0.85206 0.91102 0.91585 0.90638 0.90842 0.85407 0.85190 0.84762 0.89351 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.40 37.16 0.35 -2.33 16 2 C -0.15 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.10 2.15 -68.86 -0.15 4.96 16 4 H 0.03 0.85 7.30 -51.93 -0.38 0.48 16 5 C -0.49 -12.81 7.25 -34.44 -0.25 -13.06 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -24.93 11.38 55.43 0.63 -24.30 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.46 6.05 -100.92 -0.61 -14.07 16 14 C 0.09 1.50 2.29 -67.69 -0.16 1.35 16 15 H 0.04 0.73 7.15 -51.93 -0.37 0.36 16 16 C -0.12 -1.60 5.36 -26.70 -0.14 -1.74 16 17 C -0.08 -0.87 5.67 -28.05 -0.16 -1.02 16 18 C -0.09 -1.12 5.74 -104.60 -0.60 -1.72 16 19 C -0.09 -1.03 9.60 -39.45 -0.38 -1.41 16 20 C -0.16 -1.89 10.03 -39.62 -0.40 -2.29 16 21 C 0.09 1.22 7.30 -39.52 -0.29 0.93 16 22 F -0.14 -1.99 17.27 2.25 0.04 -1.95 16 23 C -0.16 -2.17 9.59 -39.38 -0.38 -2.54 16 24 C -0.03 -0.44 5.74 -104.62 -0.60 -1.05 16 25 C -0.07 -1.18 5.15 -28.05 -0.14 -1.32 16 26 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.03 0.50 6.64 -51.93 -0.35 0.15 16 28 H 0.07 1.59 6.85 -51.93 -0.36 1.24 16 29 H 0.09 2.38 6.23 -51.93 -0.32 2.06 16 30 H 0.01 0.21 7.47 -51.93 -0.39 -0.18 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.21 6.15 -39.29 -0.24 5.97 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 34 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.13 1.06 8.05 -52.48 -0.42 0.64 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.78 8.05 -52.49 -0.42 1.36 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.08 1.43 7.64 -51.93 -0.40 1.04 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -27.26 325.90 -9.72 -36.99 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.14 Total: 5.65 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.53 Total: -23.27 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.02 Total: -38.37 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.26 -9.72 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.637 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds