Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 H 1.09001 * 109.47458 * 185.14979 * 3 2 1 5 5 C 1.50706 * 109.47223 * 305.14896 * 3 2 1 6 6 H 1.08002 * 119.99499 * 119.99920 * 5 3 2 7 7 C 1.37868 * 119.99883 * 299.99953 * 5 3 2 8 8 N 1.31515 * 120.00208 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46988 * 89.99919 * 9 7 5 11 11 H 1.48491 * 109.47271 * 209.99816 * 9 7 5 12 12 H 1.48500 * 109.46902 * 330.00391 * 9 7 5 13 13 N 1.46905 * 109.47193 * 65.14905 * 3 2 1 14 14 C 1.46898 * 111.00216 * 85.96036 * 13 3 2 15 15 H 1.09004 * 109.67668 * 325.85740 * 14 13 3 16 16 C 1.53323 * 109.68200 * 205.29861 * 14 13 3 17 17 C 1.52734 * 108.39947 * 170.42447 * 16 14 13 18 18 C 1.50640 * 110.59742 * 51.07993 * 17 16 14 19 19 C 1.38933 * 117.72347 * 162.55880 * 18 17 16 20 20 C 1.37889 * 120.57833 * 179.37300 * 19 18 17 21 21 C 1.38485 * 119.75068 * 0.29407 * 20 19 18 22 22 F 1.35098 * 120.14614 * 179.84040 * 21 20 19 23 23 C 1.38162 * 119.71165 * 359.56384 * 21 20 19 24 24 C 1.37675 * 122.55659 * 342.17541 * 18 17 16 25 25 C 1.50640 * 122.55859 * 0.86393 * 24 18 17 26 26 H 1.09008 * 109.47053 * 174.58501 * 1 2 3 27 27 H 1.08998 * 109.47281 * 294.58395 * 1 2 3 28 28 H 1.08998 * 109.47177 * 54.58692 * 1 2 3 29 29 H 1.09005 * 109.47210 * 240.00486 * 2 1 3 30 30 H 1.09003 * 109.47264 * 120.00402 * 2 1 3 31 31 H 0.97004 * 120.00052 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99352 * 322.00600 * 13 3 2 33 33 H 1.08994 * 109.67638 * 290.14629 * 16 14 13 34 34 H 1.09000 * 109.68314 * 50.69847 * 16 14 13 35 35 H 1.08993 * 109.25165 * 290.79305 * 17 16 14 36 36 H 1.08996 * 109.24785 * 171.37154 * 17 16 14 37 37 H 1.08004 * 119.70887 * 359.39447 * 19 18 17 38 38 H 1.08001 * 120.12183 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.73376 * 180.26733 * 23 21 20 40 40 H 1.09001 * 109.25488 * 102.36276 * 25 24 18 41 41 H 1.08997 * 109.25557 * 221.79313 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0922 5 6 1.4362 2.1888 -1.1618 6 1 0.8271 3.0627 -0.9842 7 6 1.6616 1.7558 -2.4512 8 7 2.4038 0.6919 -2.6674 9 14 0.9127 2.6804 -3.8912 10 1 1.8540 3.7354 -4.3455 11 1 0.6539 1.7344 -5.0062 12 1 -0.3651 3.3067 -3.4666 13 7 1.6544 2.0982 1.2568 14 6 2.6435 1.8380 2.3113 15 1 3.0577 0.8375 2.1872 16 6 1.9750 1.9542 3.6863 17 6 2.9549 1.4485 4.7430 18 6 4.2950 2.1187 4.5871 19 6 5.1742 2.0636 5.6614 20 6 6.4212 2.6461 5.5779 21 6 6.7991 3.2972 4.4156 22 9 8.0178 3.8734 4.3263 23 6 5.9267 3.3499 3.3456 24 6 4.6700 2.7651 3.4307 25 6 3.7643 2.8724 2.2318 26 1 -0.3633 -1.0232 -0.0970 27 1 -0.3634 0.4275 0.9345 28 1 -0.3633 0.5955 -0.8375 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.5626 0.3875 -3.5746 32 1 0.7321 1.8097 1.5469 33 1 1.7253 2.9962 3.8860 34 1 1.0689 1.3487 3.7063 35 1 3.0771 0.3710 4.6335 36 1 2.5577 1.6656 5.7345 37 1 4.8784 1.5598 6.5698 38 1 7.0989 2.5985 6.4175 39 1 6.2227 3.8539 2.4374 40 1 3.3297 3.8714 2.1978 41 1 4.3460 2.7031 1.3256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = -55.311160 kcal Electronic energy + Delta-G solvation = -21545.355257 eV Core-core repulsion = 18337.711233 eV Total energy + Delta-G solvation = -3207.644024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89754 -41.01115 -38.62156 -36.31448 -33.98400 -33.44551 -32.07221 -30.07251 -29.18425 -27.74615 -25.32612 -24.21411 -23.42552 -23.16958 -21.12449 -20.37906 -18.19422 -18.07342 -17.44554 -16.94490 -16.66431 -16.55104 -16.36477 -15.48797 -15.29181 -14.80402 -14.62867 -14.52474 -14.22736 -14.14512 -14.05544 -13.78801 -13.42145 -13.21435 -12.83651 -12.76656 -12.56933 -12.41479 -12.25807 -12.01505 -11.87273 -11.64887 -11.53034 -11.42671 -11.15643 -10.89984 -10.40990 -9.83943 -9.38567 -8.89864 -8.03705 -6.11668 0.18223 0.26281 1.42927 1.44837 1.54082 2.46577 2.58904 3.21560 3.25485 3.51318 3.71030 3.86743 3.96920 4.11935 4.14618 4.20278 4.34237 4.54023 4.58977 4.63140 4.65645 4.71785 4.77178 4.86167 4.94375 5.03248 5.04869 5.09828 5.15870 5.17691 5.29803 5.35753 5.38233 5.46787 5.49850 5.68736 5.73293 5.77513 5.90388 5.97973 6.36229 6.73411 6.93071 7.03982 7.56452 9.01595 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.004357 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.099781 B = 6425.196928 C = 7245.227365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.224 3.776 4 H -0.007 1.007 5 C -0.496 4.496 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.948 3.052 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.683 5.683 14 C 0.090 3.910 15 H 0.023 0.977 16 C -0.113 4.113 17 C -0.072 4.072 18 C -0.091 4.091 19 C -0.084 4.084 20 C -0.155 4.155 21 C 0.075 3.925 22 F -0.151 7.151 23 C -0.171 4.171 24 C -0.051 4.051 25 C -0.064 4.064 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.257 0.743 32 H 0.336 0.664 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 0.867 18.406 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.115 3.885 4 H 0.011 0.989 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.314 5.314 14 C -0.020 4.020 15 H 0.041 0.959 16 C -0.151 4.151 17 C -0.109 4.109 18 C -0.092 4.092 19 C -0.101 4.101 20 C -0.174 4.174 21 C 0.056 3.944 22 F -0.130 7.130 23 C -0.190 4.190 24 C -0.052 4.052 25 C -0.102 4.102 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.185 0.815 38 H 0.176 0.824 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.856 1.401 18.073 18.351 hybrid contribution 0.246 -0.325 -1.511 1.565 sum 3.102 1.076 16.563 16.885 Atomic orbital electron populations 1.21474 0.95712 0.99568 1.01016 1.21946 0.96663 1.00063 0.99159 1.18930 0.93270 0.89330 0.86931 0.98937 1.21311 1.30127 1.11234 0.90850 0.92870 1.25579 0.96030 0.95858 1.01034 1.70022 1.40173 1.25211 1.20889 0.85699 0.79026 0.78341 0.79411 1.20910 1.21264 1.19165 1.60655 1.04604 1.62952 1.03235 1.21385 0.93127 0.95327 0.92150 0.95930 1.21712 0.98364 1.02597 0.92423 1.20502 0.90063 0.99826 1.00509 1.20009 0.97909 0.98411 0.92835 1.21370 0.91809 0.97816 0.99138 1.21344 0.98925 0.99974 0.97121 1.17797 0.81101 0.99013 0.96499 1.91457 1.41778 1.82864 1.96853 1.21231 0.94701 1.03973 0.99111 1.19568 0.93472 0.96659 0.95495 1.20370 0.95254 1.00659 0.93942 0.94065 0.92843 0.93673 0.92387 0.95722 0.93358 0.84388 0.90889 0.90257 0.89841 0.87385 0.81480 0.82356 0.85698 0.90268 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.40 71.98 0.68 -4.18 16 2 C -0.14 -6.39 5.49 30.59 0.17 -6.22 16 3 C 0.22 10.98 2.15 44.17 0.09 11.07 16 4 H -0.01 -0.41 7.30 -2.39 -0.02 -0.43 16 5 C -0.50 -26.76 7.25 25.60 0.19 -26.57 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.71 5.28 84.65 0.45 1.15 16 8 N -0.92 -52.98 11.38 21.44 0.24 -52.73 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.68 -27.28 6.05 -473.20 -2.86 -30.15 16 14 C 0.09 3.03 2.29 44.93 0.10 3.13 16 15 H 0.02 0.84 7.15 -2.38 -0.02 0.82 16 16 C -0.11 -2.73 5.36 30.61 0.16 -2.56 16 17 C -0.07 -1.37 5.67 29.74 0.17 -1.20 16 18 C -0.09 -2.10 5.74 -19.85 -0.11 -2.21 16 19 C -0.08 -1.51 9.60 22.35 0.21 -1.30 16 20 C -0.16 -3.10 10.03 22.25 0.22 -2.87 16 21 C 0.07 1.94 7.30 22.31 0.16 2.11 16 22 F -0.15 -4.09 17.27 44.97 0.78 -3.32 16 23 C -0.17 -4.93 9.59 22.40 0.21 -4.72 16 24 C -0.05 -1.48 5.74 -19.86 -0.11 -1.59 16 25 C -0.06 -2.20 5.15 29.74 0.15 -2.04 16 26 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 28 H 0.04 2.04 6.85 -2.39 -0.02 2.02 16 29 H 0.06 3.09 6.23 -2.38 -0.01 3.07 16 30 H 0.02 1.03 7.47 -2.39 -0.02 1.01 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.34 12.36 6.15 -89.69 -0.55 11.81 16 33 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.08 1.73 7.94 -2.39 -0.02 1.71 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.40 8.13 -2.39 -0.02 1.38 16 37 H 0.17 1.75 8.05 -2.91 -0.02 1.72 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.12 3.64 8.05 -2.91 -0.02 3.62 16 40 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.05 1.83 7.64 -2.39 -0.02 1.81 16 Total: -1.00 -61.27 325.90 3.40 -57.87 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.47 Total: 20.42 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 2.75 Total: -38.00 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.62 Total: -82.88 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.27 3.40 -57.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.559 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds