Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 H 1.08994 * 109.46967 * 36.82889 * 3 2 1 5 5 C 1.50693 * 109.47125 * 156.83154 * 3 2 1 6 6 H 1.07998 * 120.00493 * 114.75382 * 5 3 2 7 7 C 1.37881 * 120.00069 * 294.74824 * 5 3 2 8 8 N 1.31517 * 120.00326 * 177.01971 * 7 5 3 9 9 Si 1.86799 * 119.99794 * 357.02291 * 7 5 3 10 10 H 1.48500 * 109.47303 * 93.52179 * 9 7 5 11 11 H 1.48500 * 109.47197 * 213.52085 * 9 7 5 12 12 H 1.48503 * 109.47169 * 333.51683 * 9 7 5 13 13 N 1.46900 * 109.47043 * 276.83000 * 3 2 1 14 14 C 1.46896 * 110.99892 * 65.76846 * 13 3 2 15 15 C 1.52999 * 115.56214 * 255.68807 * 14 13 3 16 16 C 1.50697 * 109.47496 * 319.29905 * 15 14 13 17 17 C 1.38247 * 119.97429 * 276.28392 * 16 15 14 18 18 C 1.38198 * 120.02256 * 179.76378 * 17 16 15 19 19 C 1.38457 * 119.97787 * 0.50720 * 18 17 16 20 20 F 1.35098 * 120.02938 * 179.76959 * 19 18 17 21 21 C 1.38465 * 119.94594 * 359.74320 * 19 18 17 22 22 C 1.38191 * 119.97530 * 0.02562 * 21 19 18 23 23 C 1.53000 * 117.49951 * 41.37972 * 14 13 3 24 24 C 1.52999 * 117.50063 * 110.00268 * 14 13 3 25 25 H 1.08994 * 109.47142 * 179.66408 * 1 2 3 26 26 H 1.09005 * 109.46725 * 299.66723 * 1 2 3 27 27 H 1.08996 * 109.46633 * 59.65985 * 1 2 3 28 28 H 1.09006 * 109.47117 * 239.99432 * 2 1 3 29 29 H 1.09006 * 109.46863 * 119.99898 * 2 1 3 30 30 H 0.97001 * 120.00011 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99801 * 301.81912 * 13 3 2 32 32 H 1.09002 * 109.46956 * 79.29994 * 15 14 13 33 33 H 1.09006 * 109.47347 * 199.29427 * 15 14 13 34 34 H 1.07998 * 119.98451 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.00892 * 180.25535 * 18 17 16 36 36 H 1.07997 * 120.01189 * 179.97438 * 21 19 18 37 37 H 1.08004 * 119.99052 * 180.02562 * 22 21 19 38 38 H 1.08995 * 117.49979 * 359.97438 * 23 14 13 39 39 H 1.09005 * 117.49734 * 214.97551 * 23 14 13 40 40 H 1.09001 * 117.50486 * 145.01863 * 24 14 13 41 41 H 1.09004 * 117.51368 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3858 2.0592 0.6160 5 6 3.4391 1.4805 0.5590 6 1 4.2654 1.7709 -0.0729 7 6 3.6641 1.1448 1.8772 8 7 4.8913 1.1212 2.3496 9 14 2.2259 0.7234 2.9923 10 1 2.0127 -0.7463 2.9912 11 1 2.5208 1.1797 4.3743 12 1 1.0009 1.4017 2.4979 13 7 2.0481 1.9590 -1.3752 14 6 0.6823 2.0652 -1.9055 15 6 0.2772 0.9824 -2.9076 16 6 1.4289 0.7030 -3.8385 17 6 1.6302 1.5033 -4.9476 18 6 2.6890 1.2511 -5.7993 19 6 3.5419 0.1900 -5.5472 20 9 4.5745 -0.0604 -6.3817 21 6 3.3362 -0.6141 -4.4389 22 6 2.2797 -0.3570 -3.5860 23 6 -0.4008 2.5993 -0.9660 24 6 0.1129 3.4698 -2.1146 25 1 -0.3633 -1.0276 -0.0060 26 1 -0.3633 0.5087 0.8930 27 1 -0.3632 0.5191 -0.8869 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 5.0496 0.8847 3.2769 31 1 2.6247 1.3862 -1.9732 32 1 0.0144 0.0707 -2.3709 33 1 -0.5819 1.3245 -3.4848 34 1 0.9624 2.3285 -5.1462 35 1 2.8485 1.8789 -6.6634 36 1 4.0006 -1.4422 -4.2415 37 1 2.1192 -0.9837 -2.7212 38 1 -0.1000 2.8714 0.0456 39 1 -1.4020 2.1792 -1.0619 40 1 -0.5503 3.6225 -2.9660 41 1 0.7514 4.3153 -1.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = 13.797810 kcal Electronic energy + Delta-G solvation = -22321.613120 eV Core-core repulsion = 19116.965886 eV Total energy + Delta-G solvation = -3204.647234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.80417 -39.85423 -38.09672 -34.63437 -32.05913 -31.85671 -31.05362 -30.39148 -27.27059 -26.13799 -23.01268 -22.72287 -22.16269 -21.66826 -20.08967 -18.72367 -17.55917 -16.98554 -16.29735 -15.86994 -15.54933 -15.29640 -14.72253 -14.49590 -13.99146 -13.91545 -13.44539 -13.23888 -13.01071 -12.78751 -12.73925 -12.14235 -11.97141 -11.73990 -11.69862 -11.41989 -11.14475 -10.96866 -10.92591 -10.86243 -10.59854 -9.92772 -9.69450 -9.66280 -9.38881 -9.01072 -8.96601 -8.58925 -8.42569 -7.36586 -6.06400 -4.04261 1.20135 1.30469 3.25461 3.36055 3.36703 3.63105 4.14023 4.33915 4.39809 4.73159 4.81761 4.86290 4.95595 5.12549 5.18967 5.23917 5.31815 5.43099 5.52993 5.79758 5.82848 5.89035 5.91225 5.97544 5.98683 6.02971 6.07597 6.15878 6.18803 6.29321 6.35028 6.52906 6.58288 6.62507 6.66733 6.80138 6.86275 6.96177 7.25946 7.70046 7.95367 8.38982 8.67063 9.02353 9.55935 11.06700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.006214 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.817193 B = 4504.712511 C = 5342.083916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.045 0.955 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.637 5.637 14 C 0.055 3.945 15 C -0.075 4.075 16 C -0.081 4.081 17 C -0.080 4.080 18 C -0.153 4.153 19 C 0.090 3.910 20 F -0.144 7.144 21 C -0.146 4.146 22 C -0.088 4.088 23 C -0.179 4.179 24 C -0.171 4.171 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.263 0.737 31 H 0.341 0.659 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -1.562 -13.424 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.197 4.197 3 C 0.078 3.922 4 H 0.062 0.938 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.267 5.267 14 C -0.038 4.038 15 C -0.113 4.113 16 C -0.081 4.081 17 C -0.098 4.098 18 C -0.172 4.172 19 C 0.071 3.929 20 F -0.123 7.123 21 C -0.165 4.165 22 C -0.106 4.106 23 C -0.216 4.216 24 C -0.209 4.209 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.402 -0.940 -13.082 16.740 hybrid contribution -0.560 -1.320 0.562 1.540 sum -10.962 -2.260 -12.520 16.793 Atomic orbital electron populations 1.22587 0.98268 1.00178 1.02758 1.22705 0.93699 1.02165 1.01137 1.19781 0.97620 0.88677 0.86124 0.93759 1.20965 0.91995 1.45111 0.96231 0.90423 1.24888 0.95264 0.95107 0.97786 1.69898 1.19440 1.49078 1.15408 0.86982 0.83930 0.78687 0.80025 1.20582 1.22053 1.18575 1.60528 1.05192 1.56628 1.04339 1.21358 0.90891 0.93360 0.98173 1.20894 0.95285 0.99769 0.95398 1.19809 0.97461 0.95254 0.95594 1.20834 0.96907 0.98574 0.93492 1.21073 0.96260 0.97939 1.01893 1.17709 0.87192 0.97439 0.90607 1.91477 1.56548 1.93898 1.70395 1.21133 0.99887 1.00996 0.94499 1.21089 0.93688 0.97226 0.98551 1.23279 0.97427 1.04153 0.96755 1.23254 1.02857 0.95390 0.99425 0.94651 0.93410 0.90338 0.93226 0.92421 0.92713 0.83863 0.89532 0.90625 0.85221 0.85063 0.84774 0.84826 0.87979 0.89403 0.89786 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 7.79 37.16 0.29 -2.76 16 2 C -0.16 -3.19 4.44 -26.73 -0.12 -3.31 16 3 C 0.19 4.20 1.66 -68.87 -0.11 4.09 16 4 H 0.04 1.05 4.37 -51.93 -0.23 0.83 16 5 C -0.50 -13.97 9.31 -34.44 -0.32 -14.29 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.03 5.37 -17.82 -0.10 1.93 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 9 Si 0.87 21.42 24.85 -169.99 -4.22 17.20 16 10 H -0.28 -6.71 6.98 56.52 0.39 -6.31 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.04 5.87 56.52 0.33 -5.71 16 13 N -0.64 -12.57 6.47 -94.26 -0.61 -13.18 16 14 C 0.06 0.85 1.34 -131.60 -0.18 0.68 16 15 C -0.07 -0.96 4.92 -27.88 -0.14 -1.09 16 16 C -0.08 -1.06 4.09 -104.62 -0.43 -1.49 16 17 C -0.08 -0.96 9.72 -39.59 -0.38 -1.35 16 18 C -0.15 -1.86 10.03 -39.52 -0.40 -2.26 16 19 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 20 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 21 C -0.15 -1.98 10.03 -39.52 -0.40 -2.37 16 22 C -0.09 -1.20 8.32 -39.59 -0.33 -1.53 16 23 C -0.18 -2.65 6.87 -26.73 -0.18 -2.83 16 24 C -0.17 -2.40 10.10 -26.73 -0.27 -2.67 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 27 H 0.08 1.16 1.98 -51.93 -0.10 1.06 16 28 H 0.05 0.93 6.05 -51.93 -0.31 0.62 16 29 H 0.06 1.30 4.78 -51.93 -0.25 1.05 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.34 6.72 5.80 -39.29 -0.23 6.49 16 32 H 0.09 1.11 5.60 -51.93 -0.29 0.82 16 33 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.13 1.82 6.23 -52.48 -0.33 1.49 16 38 H 0.10 1.76 6.39 -51.93 -0.33 1.43 16 39 H 0.09 1.11 7.76 -51.93 -0.40 0.70 16 40 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 41 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -29.84 313.31 -8.10 -37.95 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.45 Total: 10.27 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.35 Total: -28.33 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.16 Total: -39.82 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.22 Total: 17.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.84 -8.10 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.743 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds