Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 H 1.08994 * 109.46967 * 36.82889 * 3 2 1 5 5 C 1.50693 * 109.47125 * 156.83154 * 3 2 1 6 6 H 1.07998 * 120.00493 * 114.75382 * 5 3 2 7 7 C 1.37881 * 120.00069 * 294.74824 * 5 3 2 8 8 N 1.31517 * 120.00326 * 177.01971 * 7 5 3 9 9 Si 1.86799 * 119.99794 * 357.02291 * 7 5 3 10 10 H 1.48500 * 109.47303 * 93.52179 * 9 7 5 11 11 H 1.48500 * 109.47197 * 213.52085 * 9 7 5 12 12 H 1.48503 * 109.47169 * 333.51683 * 9 7 5 13 13 N 1.46900 * 109.47043 * 276.83000 * 3 2 1 14 14 C 1.46896 * 110.99892 * 65.76846 * 13 3 2 15 15 C 1.52999 * 115.56214 * 255.68807 * 14 13 3 16 16 C 1.50697 * 109.47496 * 319.29905 * 15 14 13 17 17 C 1.38247 * 119.97429 * 276.28392 * 16 15 14 18 18 C 1.38198 * 120.02256 * 179.76378 * 17 16 15 19 19 C 1.38457 * 119.97787 * 0.50720 * 18 17 16 20 20 F 1.35098 * 120.02938 * 179.76959 * 19 18 17 21 21 C 1.38465 * 119.94594 * 359.74320 * 19 18 17 22 22 C 1.38191 * 119.97530 * 0.02562 * 21 19 18 23 23 C 1.53000 * 117.49951 * 41.37972 * 14 13 3 24 24 C 1.52999 * 117.50063 * 110.00268 * 14 13 3 25 25 H 1.08994 * 109.47142 * 179.66408 * 1 2 3 26 26 H 1.09005 * 109.46725 * 299.66723 * 1 2 3 27 27 H 1.08996 * 109.46633 * 59.65985 * 1 2 3 28 28 H 1.09006 * 109.47117 * 239.99432 * 2 1 3 29 29 H 1.09006 * 109.46863 * 119.99898 * 2 1 3 30 30 H 0.97001 * 120.00011 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99801 * 301.81912 * 13 3 2 32 32 H 1.09002 * 109.46956 * 79.29994 * 15 14 13 33 33 H 1.09006 * 109.47347 * 199.29427 * 15 14 13 34 34 H 1.07998 * 119.98451 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.00892 * 180.25535 * 18 17 16 36 36 H 1.07997 * 120.01189 * 179.97438 * 21 19 18 37 37 H 1.08004 * 119.99052 * 180.02562 * 22 21 19 38 38 H 1.08995 * 117.49979 * 359.97438 * 23 14 13 39 39 H 1.09005 * 117.49734 * 214.97551 * 23 14 13 40 40 H 1.09001 * 117.50486 * 145.01863 * 24 14 13 41 41 H 1.09004 * 117.51368 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3858 2.0592 0.6160 5 6 3.4391 1.4805 0.5590 6 1 4.2654 1.7709 -0.0729 7 6 3.6641 1.1448 1.8772 8 7 4.8913 1.1212 2.3496 9 14 2.2259 0.7234 2.9923 10 1 2.0127 -0.7463 2.9912 11 1 2.5208 1.1797 4.3743 12 1 1.0009 1.4017 2.4979 13 7 2.0481 1.9590 -1.3752 14 6 0.6823 2.0652 -1.9055 15 6 0.2772 0.9824 -2.9076 16 6 1.4289 0.7030 -3.8385 17 6 1.6302 1.5033 -4.9476 18 6 2.6890 1.2511 -5.7993 19 6 3.5419 0.1900 -5.5472 20 9 4.5745 -0.0604 -6.3817 21 6 3.3362 -0.6141 -4.4389 22 6 2.2797 -0.3570 -3.5860 23 6 -0.4008 2.5993 -0.9660 24 6 0.1129 3.4698 -2.1146 25 1 -0.3633 -1.0276 -0.0060 26 1 -0.3633 0.5087 0.8930 27 1 -0.3632 0.5191 -0.8869 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 5.0496 0.8847 3.2769 31 1 2.6247 1.3862 -1.9732 32 1 0.0144 0.0707 -2.3709 33 1 -0.5819 1.3245 -3.4848 34 1 0.9624 2.3285 -5.1462 35 1 2.8485 1.8789 -6.6634 36 1 4.0006 -1.4422 -4.2415 37 1 2.1192 -0.9837 -2.7212 38 1 -0.1000 2.8714 0.0456 39 1 -1.4020 2.1792 -1.0619 40 1 -0.5503 3.6225 -2.9660 41 1 0.7514 4.3153 -1.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = -4.454999 kcal Electronic energy + Delta-G solvation = -22322.404621 eV Core-core repulsion = 19116.965886 eV Total energy + Delta-G solvation = -3205.438735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86833 -41.00304 -39.25123 -36.24137 -33.99349 -32.98049 -32.03970 -31.85377 -28.83084 -27.49759 -24.27131 -23.99266 -23.56172 -22.71689 -21.58382 -20.08495 -18.88816 -18.57669 -17.34540 -17.16732 -16.99489 -16.56875 -16.02894 -15.78838 -15.43430 -14.97475 -14.80117 -14.44742 -14.37257 -14.24750 -14.05033 -13.76613 -13.25638 -13.12004 -12.79360 -12.78082 -12.62540 -12.59934 -12.24078 -12.14307 -11.86886 -11.64316 -11.38279 -11.04284 -10.88635 -10.73029 -10.59897 -10.00148 -9.46029 -8.83424 -8.27996 -6.29961 0.18946 0.32580 1.29538 1.33849 1.43842 2.32355 2.63115 2.98967 3.06274 3.33659 3.52665 3.78394 3.81621 3.98868 4.05085 4.17652 4.25273 4.33961 4.43501 4.45463 4.49160 4.56131 4.79951 4.87842 4.88442 4.93484 4.98500 5.04063 5.13732 5.17584 5.20265 5.21388 5.23508 5.30653 5.37577 5.47508 5.61314 5.67349 5.72094 5.98802 6.09198 6.69420 6.76292 6.91111 7.35476 8.89135 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.006214 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.817193 B = 4504.712511 C = 5342.083916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.155 4.155 3 C 0.197 3.803 4 H 0.037 0.963 5 C -0.509 4.509 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.298 1.298 12 H -0.238 1.238 13 N -0.656 5.656 14 C 0.039 3.961 15 C -0.068 4.068 16 C -0.086 4.086 17 C -0.078 4.078 18 C -0.152 4.152 19 C 0.071 3.929 20 F -0.152 7.152 21 C -0.160 4.160 22 C -0.102 4.102 23 C -0.179 4.179 24 C -0.157 4.157 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 -1.420 -14.749 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.194 4.194 3 C 0.088 3.912 4 H 0.055 0.945 5 C -0.547 4.547 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.593 5.593 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.225 1.225 12 H -0.161 1.161 13 N -0.285 5.285 14 C -0.053 4.053 15 C -0.106 4.106 16 C -0.086 4.086 17 C -0.095 4.095 18 C -0.170 4.170 19 C 0.052 3.948 20 F -0.131 7.131 21 C -0.179 4.179 22 C -0.120 4.120 23 C -0.217 4.217 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.222 -0.792 -14.433 20.278 hybrid contribution 0.731 -1.288 0.875 1.720 sum -13.491 -2.080 -13.558 19.239 Atomic orbital electron populations 1.22554 0.94970 1.02027 1.03648 1.22547 0.96614 0.99860 1.00399 1.19476 0.93861 0.90274 0.87621 0.94506 1.21329 0.93661 1.43815 0.95918 0.95330 1.25756 0.97958 0.95209 0.99545 1.70067 1.22086 1.51274 1.15904 0.85934 0.81123 0.79113 0.77301 1.19420 1.22485 1.16097 1.60376 1.08477 1.56587 1.03107 1.21519 0.88792 0.95505 0.99478 1.20870 0.96042 0.98816 0.94847 1.19964 0.97502 0.95053 0.96110 1.21160 0.96942 0.98785 0.92658 1.21379 0.95711 0.97372 1.02563 1.17957 0.87676 0.98373 0.90827 1.91455 1.56977 1.94053 1.70569 1.21266 1.00267 1.01488 0.94900 1.21152 0.94220 0.98026 0.98561 1.23315 0.98493 1.04421 0.95440 1.23314 1.02372 0.93594 1.00251 0.92388 0.93961 0.88027 0.92314 0.94962 0.92750 0.84215 0.89398 0.87137 0.82405 0.82870 0.84559 0.85299 0.90801 0.86150 0.85917 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 7.79 71.98 0.56 -4.72 16 2 C -0.15 -6.06 4.44 30.60 0.14 -5.92 16 3 C 0.20 8.84 1.66 44.17 0.07 8.91 16 4 H 0.04 1.73 4.37 -2.39 -0.01 1.72 16 5 C -0.51 -29.30 9.31 25.60 0.24 -29.06 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.70 5.37 84.66 0.45 1.16 16 8 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 9 Si 0.94 44.76 24.85 68.60 1.70 46.47 16 10 H -0.27 -12.25 6.98 99.48 0.69 -11.56 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.24 -10.30 5.87 99.48 0.58 -9.72 16 13 N -0.66 -25.48 6.47 -452.12 -2.92 -28.41 16 14 C 0.04 1.09 1.34 3.53 0.00 1.10 16 15 C -0.07 -1.44 4.92 29.85 0.15 -1.29 16 16 C -0.09 -2.03 4.09 -19.86 -0.08 -2.11 16 17 C -0.08 -1.61 9.72 22.26 0.22 -1.40 16 18 C -0.15 -3.37 10.03 22.31 0.22 -3.15 16 19 C 0.07 1.88 7.30 22.38 0.16 2.04 16 20 F -0.15 -4.25 17.27 44.97 0.78 -3.47 16 21 C -0.16 -4.35 10.03 22.31 0.22 -4.12 16 22 C -0.10 -2.70 8.32 22.26 0.19 -2.52 16 23 C -0.18 -4.65 6.87 30.59 0.21 -4.44 16 24 C -0.16 -3.80 10.10 30.59 0.31 -3.49 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.32 7.70 -2.38 -0.02 1.30 16 27 H 0.10 2.56 1.98 -2.39 0.00 2.56 16 28 H 0.06 2.15 6.05 -2.38 -0.01 2.14 16 29 H 0.03 1.41 4.78 -2.38 -0.01 1.40 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.34 13.33 5.80 -89.69 -0.52 12.81 16 32 H 0.09 1.87 5.60 -2.39 -0.01 1.85 16 33 H 0.11 1.64 7.94 -2.38 -0.02 1.62 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.13 3.45 6.23 -2.91 -0.02 3.43 16 38 H 0.07 2.38 6.39 -2.39 -0.02 2.36 16 39 H 0.12 2.35 7.76 -2.38 -0.02 2.33 16 40 H 0.12 2.05 8.09 -2.39 -0.02 2.03 16 41 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -68.49 313.31 3.32 -65.17 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.40 Total: 29.58 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 3.06 Total: -49.01 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.63 Total: -88.74 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.70 Total: 46.47 kcal Total: -68.49 3.32 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.714 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds