Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47376 * 2 1 4 4 H 1.09004 * 109.47356 * 283.26422 * 3 2 1 5 5 C 1.50706 * 109.46929 * 163.26905 * 3 2 1 6 6 H 1.08007 * 119.99772 * 246.58237 * 5 3 2 7 7 C 1.37869 * 120.00207 * 66.86315 * 5 3 2 8 8 N 1.31511 * 120.00391 * 356.04898 * 7 5 3 9 9 Si 1.86807 * 120.00186 * 176.05308 * 7 5 3 10 10 H 1.48499 * 109.46830 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47190 * 119.99815 * 9 7 5 12 12 H 1.48506 * 109.47018 * 239.99950 * 9 7 5 13 13 N 1.46897 * 109.47263 * 43.26959 * 3 2 1 14 14 C 1.46905 * 110.99642 * 254.47817 * 13 3 2 15 15 C 1.52997 * 115.54798 * 160.91768 * 14 13 3 16 16 C 1.50697 * 109.47302 * 305.60714 * 15 14 13 17 17 C 1.38246 * 119.97264 * 273.59196 * 16 15 14 18 18 C 1.38203 * 120.02426 * 179.76723 * 17 16 15 19 19 C 1.38458 * 119.97235 * 0.50973 * 18 17 16 20 20 F 1.35104 * 120.02353 * 179.77022 * 19 18 17 21 21 C 1.38460 * 119.95060 * 359.74653 * 19 18 17 22 22 C 1.38192 * 119.97374 * 359.97438 * 21 19 18 23 23 C 1.52995 * 117.50049 * 15.21195 * 14 13 3 24 24 C 1.52992 * 60.00048 * 252.50894 * 23 14 13 25 25 H 1.08993 * 109.47684 * 186.40668 * 1 2 3 26 26 H 1.08998 * 109.46910 * 306.40621 * 1 2 3 27 27 H 1.09005 * 109.46999 * 66.40523 * 1 2 3 28 28 H 1.09005 * 109.47013 * 239.99774 * 2 1 3 29 29 H 1.09003 * 109.46885 * 120.00460 * 2 1 3 30 30 H 0.96998 * 120.00515 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00418 * 130.52954 * 13 3 2 32 32 H 1.09003 * 109.47129 * 65.60495 * 15 14 13 33 33 H 1.09005 * 109.47239 * 185.60417 * 15 14 13 34 34 H 1.07996 * 119.98633 * 0.02562 * 17 16 15 35 35 H 1.08003 * 120.01234 * 180.25355 * 18 17 16 36 36 H 1.07993 * 120.01015 * 179.97438 * 21 19 18 37 37 H 1.08004 * 119.99024 * 180.02562 * 22 21 19 38 38 H 1.09003 * 117.50112 * 359.97438 * 23 14 13 39 39 H 1.08999 * 117.50012 * 145.01945 * 23 14 13 40 40 H 1.08996 * 117.49955 * 252.50872 * 24 23 14 41 41 H 1.09002 * 117.50379 * 107.49110 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.9389 1.8636 -1.0003 5 6 3.4904 1.4623 0.4090 6 1 3.7821 1.9219 1.3419 7 6 4.4455 0.8992 -0.4103 8 7 4.0837 0.2763 -1.5106 9 14 6.2538 1.0206 0.0425 10 1 6.3954 1.7663 1.3189 11 1 6.8172 -0.3441 0.2009 12 1 6.9863 1.7369 -1.0326 13 7 1.2525 2.2403 0.9493 14 6 0.3157 3.1247 0.2434 15 6 -0.8491 3.6557 1.0813 16 6 -1.5835 2.4998 1.7101 17 6 -2.5887 1.8578 1.0111 18 6 -3.2597 0.7945 1.5849 19 6 -2.9321 0.3792 2.8644 20 9 -3.5905 -0.6571 3.4282 21 6 -1.9288 1.0265 3.5657 22 6 -1.2553 2.0857 2.9876 23 6 0.0487 2.8353 -1.2350 24 6 0.8904 4.0479 -0.8328 25 1 -0.3634 -1.0211 0.1147 26 1 -0.3633 0.6099 0.8271 27 1 -0.3633 0.4114 -0.9418 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.7557 -0.1202 -2.0868 31 1 1.8538 2.7677 1.5644 32 1 -0.4651 4.3108 1.8633 33 1 -1.5316 4.2151 0.4414 34 1 -2.8467 2.1845 0.0146 35 1 -4.0421 0.2904 1.0370 36 1 -1.6728 0.7036 4.5639 37 1 -0.4724 2.5905 3.5342 38 1 0.5685 1.9889 -1.6841 39 1 -0.9570 3.0231 -1.6110 40 1 0.4385 5.0335 -0.9441 41 1 1.9636 3.9992 -1.0171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -8.769212 kcal Electronic energy + Delta-G solvation = -22283.535413 eV Core-core repulsion = 19077.909599 eV Total energy + Delta-G solvation = -3205.625814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.75999 -40.67262 -39.20929 -36.04726 -33.66910 -32.75948 -31.93654 -31.37982 -28.36753 -27.43462 -24.71390 -23.85618 -23.29794 -22.55147 -21.25526 -19.76820 -18.77330 -18.43721 -17.28658 -16.87596 -16.71719 -16.47851 -16.20869 -15.55480 -15.40673 -14.79735 -14.59791 -14.33101 -14.20136 -13.87646 -13.67280 -13.28826 -13.10974 -13.01333 -12.82035 -12.65201 -12.51832 -12.35657 -12.26181 -11.98628 -11.78794 -11.71493 -11.40236 -11.15545 -10.69107 -10.59489 -10.39284 -9.83391 -9.25777 -8.74963 -8.11704 -6.23120 0.37681 0.51023 1.37291 1.40374 1.50234 2.40701 2.78809 3.07427 3.18204 3.48049 3.63993 3.92814 3.99701 4.10634 4.14481 4.16584 4.39098 4.54768 4.57071 4.66686 4.80775 4.89310 4.90397 5.01061 5.03341 5.05616 5.18497 5.20873 5.29782 5.35082 5.36561 5.41227 5.47080 5.51033 5.59893 5.78871 5.80285 5.87044 6.03361 6.14961 6.24464 6.51301 6.90959 7.13454 7.46704 8.93859 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.005363 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.145171 B = 5219.305567 C = 5705.250263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C 0.214 3.786 4 H 0.015 0.985 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.640 5.640 14 C 0.070 3.930 15 C -0.027 4.027 16 C -0.063 4.063 17 C -0.088 4.088 18 C -0.158 4.158 19 C 0.064 3.936 20 F -0.156 7.156 21 C -0.161 4.161 22 C -0.074 4.074 23 C -0.183 4.183 24 C -0.217 4.217 25 H 0.018 0.982 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.333 0.667 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 7.033 5.400 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C 0.106 3.894 4 H 0.033 0.967 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.269 5.269 14 C -0.023 4.023 15 C -0.064 4.064 16 C -0.063 4.063 17 C -0.106 4.106 18 C -0.177 4.177 19 C 0.045 3.955 20 F -0.135 7.135 21 C -0.180 4.180 22 C -0.092 4.092 23 C -0.220 4.220 24 C -0.256 4.256 25 H 0.038 0.962 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.059 6.391 5.403 16.361 hybrid contribution 2.044 -0.249 -0.438 2.105 sum -12.015 6.141 4.966 14.378 Atomic orbital electron populations 1.21884 0.95937 0.99195 1.02302 1.21239 0.94470 0.98744 0.97758 1.19062 0.89127 0.90157 0.91070 0.96744 1.21910 0.93526 1.37212 1.05376 0.92576 1.25644 1.02738 0.94893 0.95083 1.70079 1.34424 1.36947 1.14176 0.85620 0.80833 0.77538 0.78297 1.18998 1.21211 1.20859 1.60402 1.21624 1.24456 1.20420 1.21734 0.96250 0.96277 0.88004 1.20075 0.93293 0.94279 0.98796 1.19784 0.94998 0.97755 0.93794 1.21049 0.95008 0.94554 1.00021 1.21228 1.02998 0.99519 0.93950 1.17940 0.95628 0.88135 0.93816 1.91436 1.80044 1.56652 1.85373 1.21253 0.96942 0.98157 1.01651 1.21002 0.97633 0.95474 0.95139 1.23403 1.01284 0.99384 0.97934 1.23513 0.98709 0.96048 1.07355 0.96245 0.89260 0.94062 0.95243 0.96923 0.93200 0.84841 0.89317 0.88336 0.83835 0.84002 0.84404 0.84391 0.90616 0.86794 0.86741 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.67 71.98 0.62 -4.81 16 2 C -0.08 -4.06 5.42 30.59 0.17 -3.89 16 3 C 0.21 10.17 1.64 44.17 0.07 10.25 16 4 H 0.02 0.78 4.32 -2.38 -0.01 0.77 16 5 C -0.54 -28.81 8.42 25.60 0.22 -28.60 16 6 H 0.06 2.93 7.42 -2.91 -0.02 2.91 16 7 C 0.02 0.87 5.36 84.65 0.45 1.32 16 8 N -0.92 -52.97 11.93 21.44 0.26 -52.72 16 9 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.64 -24.04 5.01 -452.11 -2.26 -26.31 16 14 C 0.07 2.11 1.95 3.52 0.01 2.11 16 15 C -0.03 -0.59 5.45 29.85 0.16 -0.42 16 16 C -0.06 -1.50 3.34 -19.86 -0.07 -1.56 16 17 C -0.09 -2.01 8.84 22.26 0.20 -1.81 16 18 C -0.16 -3.81 10.03 22.31 0.22 -3.59 16 19 C 0.06 1.71 7.30 22.38 0.16 1.88 16 20 F -0.16 -4.43 17.27 44.97 0.78 -3.66 16 21 C -0.16 -4.12 10.03 22.31 0.22 -3.89 16 22 C -0.07 -1.83 9.47 22.26 0.21 -1.62 16 23 C -0.18 -5.81 7.72 30.59 0.24 -5.57 16 24 C -0.22 -6.73 9.58 30.59 0.29 -6.43 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 3.29 3.80 -2.39 -0.01 3.28 16 27 H 0.04 1.57 6.14 -2.38 -0.01 1.55 16 28 H 0.03 1.60 7.01 -2.38 -0.02 1.59 16 29 H 0.01 0.63 8.02 -2.39 -0.02 0.61 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.33 12.63 7.96 -89.69 -0.71 11.91 16 32 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 33 H 0.10 1.69 8.06 -2.38 -0.02 1.67 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.08 3.06 4.75 -2.39 -0.01 3.05 16 39 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 40 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.06 2.40 7.64 -2.39 -0.02 2.38 16 Total: -1.00 -60.55 326.42 4.30 -56.25 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.32 Total: 27.53 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 3.18 Total: -46.64 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.01 Total: -79.03 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -60.55 4.30 -56.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.480 kcal (2) G-P(sol) polarization free energy of solvation -60.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds