Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 H 1.09001 * 109.47022 * 179.24272 * 3 2 1 5 5 C 1.50705 * 109.46936 * 59.24957 * 3 2 1 6 6 H 1.07995 * 120.00101 * 239.99389 * 5 3 2 7 7 C 1.37881 * 119.99920 * 59.99944 * 5 3 2 8 8 N 1.31511 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47038 * 60.00170 * 9 7 5 11 11 H 1.48500 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47397 * 300.00162 * 9 7 5 13 13 N 1.46894 * 109.47485 * 299.24943 * 3 2 1 14 14 C 1.48674 * 111.10671 * 307.46026 * 13 3 2 15 15 C 1.54385 * 104.67172 * 201.09484 * 14 13 3 16 16 C 1.54259 * 105.05819 * 23.77245 * 15 14 13 17 17 C 1.48560 * 111.00407 * 192.04145 * 13 3 2 18 18 H 1.09001 * 110.40618 * 40.14365 * 17 13 3 19 19 C 1.50701 * 110.41145 * 277.82231 * 17 13 3 20 20 C 1.38247 * 119.97272 * 321.36467 * 19 17 13 21 21 C 1.38194 * 120.02463 * 179.77040 * 20 19 17 22 22 C 1.38460 * 119.97578 * 0.51131 * 21 20 19 23 23 F 1.35095 * 120.02698 * 179.76775 * 22 21 20 24 24 C 1.38455 * 119.94510 * 359.74545 * 22 21 20 25 25 C 1.38202 * 119.97863 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47243 * 304.11394 * 1 2 3 27 27 H 1.09004 * 109.46782 * 64.11648 * 1 2 3 28 28 H 1.09003 * 109.47165 * 184.10767 * 1 2 3 29 29 H 1.08999 * 109.47458 * 239.99853 * 2 1 3 30 30 H 1.09000 * 109.46640 * 119.99990 * 2 1 3 31 31 H 0.96998 * 119.99882 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.44266 * 82.25959 * 14 13 3 33 33 H 1.08999 * 110.40601 * 319.91645 * 14 13 3 34 34 H 1.08997 * 110.32323 * 264.87792 * 15 14 13 35 35 H 1.08996 * 110.32045 * 142.67112 * 15 14 13 36 36 H 1.08998 * 110.31997 * 241.10015 * 16 15 14 37 37 H 1.08997 * 110.32312 * 118.89636 * 16 15 14 38 38 H 1.08011 * 119.98471 * 0.02945 * 20 19 17 39 39 H 1.08000 * 120.01265 * 180.26014 * 21 20 19 40 40 H 1.08002 * 120.01238 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.99086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5225 2.1582 1.2211 6 1 0.9030 3.0359 1.1106 7 6 1.8401 1.6926 2.4795 8 7 2.5942 0.6236 2.6141 9 14 1.1992 2.5802 3.9930 10 1 -0.2857 2.5807 3.9748 11 1 1.6796 1.8857 5.2145 12 1 1.6947 3.9801 3.9928 13 7 1.5653 2.1298 -1.2083 14 6 1.9032 1.3560 -2.4321 15 6 1.8557 2.3923 -3.5755 16 6 2.0942 3.7545 -2.8920 17 6 2.2657 3.4267 -1.3932 18 1 3.3223 3.3269 -1.1443 19 6 1.6258 4.4953 -0.5448 20 6 0.2515 4.5300 -0.3984 21 6 -0.3361 5.5066 0.3832 22 6 0.4512 6.4568 1.0111 23 9 -0.1225 7.4147 1.7716 24 6 1.8270 6.4242 0.8594 25 6 2.4129 5.4438 0.0812 26 1 -0.3633 0.5763 0.8508 27 1 -0.3633 0.4486 -0.9246 28 1 -0.3633 -1.0250 0.0736 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8179 0.2963 3.4994 32 1 1.1673 0.5698 -2.6008 33 1 2.9024 0.9286 -2.3476 34 1 0.8792 2.3774 -4.0595 35 1 2.6425 2.1904 -4.3022 36 1 1.2348 4.4082 -3.0406 37 1 2.9981 4.2213 -3.2833 38 1 -0.3627 3.7911 -0.8916 39 1 -1.4094 5.5310 0.5008 40 1 2.4422 7.1651 1.3484 41 1 3.4861 5.4179 -0.0370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -18.545934 kcal Electronic energy + Delta-G solvation = -22766.813466 eV Core-core repulsion = 19560.763702 eV Total energy + Delta-G solvation = -3206.049764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.43638 -39.43494 -37.47986 -34.41109 -31.59742 -31.01197 -30.59157 -29.39594 -26.99085 -26.00160 -23.35933 -22.65741 -22.04814 -20.95299 -19.67357 -18.75551 -17.19796 -16.35733 -15.82852 -15.58405 -15.24905 -15.03450 -14.26723 -14.05092 -13.63778 -13.42500 -13.08064 -12.88209 -12.79444 -12.37108 -12.29838 -12.14123 -11.63605 -11.60674 -11.20141 -10.90751 -10.78294 -10.65185 -10.61659 -10.44440 -10.30562 -10.12667 -9.84523 -9.67080 -9.43599 -8.91505 -8.46268 -8.38230 -7.78851 -7.39259 -5.96378 -3.97164 1.72479 1.83039 3.35908 3.39259 3.45300 4.13644 4.45586 4.77891 4.84557 5.13856 5.20687 5.28064 5.35786 5.36728 5.48898 5.59967 5.80427 5.87383 5.98841 6.00168 6.17393 6.19176 6.35354 6.41310 6.44113 6.51108 6.55575 6.57754 6.60766 6.65956 6.73267 6.84233 7.04642 7.11543 7.22857 7.37990 7.46421 7.59973 7.69325 7.90773 8.07559 8.32621 8.55879 9.08838 9.66742 11.10585 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.010315 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.277465 B = 2713.790035 C = 4337.920934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.208 3.792 4 H -0.001 1.001 5 C -0.491 4.491 6 H 0.074 0.926 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.493 5.493 14 C 0.033 3.967 15 C -0.123 4.123 16 C -0.117 4.117 17 C 0.109 3.891 18 H 0.053 0.947 19 C -0.037 4.037 20 C -0.048 4.048 21 C -0.163 4.163 22 C 0.077 3.923 23 F -0.152 7.152 24 C -0.158 4.158 25 C -0.089 4.089 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.091 0.909 31 H 0.258 0.742 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 6.225 -9.182 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.102 3.898 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.092 0.908 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.202 1.202 13 N -0.218 5.218 14 C -0.096 4.096 15 C -0.161 4.161 16 C -0.155 4.155 17 C 0.000 4.000 18 H 0.071 0.929 19 C -0.037 4.037 20 C -0.066 4.066 21 C -0.182 4.182 22 C 0.058 3.942 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.107 4.107 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.838 6.187 -8.921 11.011 hybrid contribution 0.568 0.326 1.293 1.450 sum -1.270 6.512 -7.627 10.109 Atomic orbital electron populations 1.21488 0.97264 0.97651 1.01443 1.21584 0.95233 0.98171 1.00114 1.19470 0.93015 0.90967 0.86358 0.98358 1.21267 1.30630 1.11990 0.89082 0.90783 1.24840 0.95333 0.94975 0.98694 1.69865 1.37652 1.23138 1.22875 0.86797 0.79503 0.80051 0.82677 1.20249 1.21564 1.20212 1.65453 1.52631 1.01386 1.02317 1.23016 0.99140 0.96453 0.90974 1.22299 1.01171 0.95069 0.97582 1.22371 1.01333 0.97350 0.94423 1.21334 0.95900 0.90522 0.92227 0.92884 1.19541 0.93456 0.94145 0.96591 1.20798 0.94750 0.95232 0.95861 1.21065 0.99989 0.96362 1.00737 1.17668 0.91651 0.89322 0.95532 1.91426 1.85277 1.62294 1.74114 1.20895 0.92785 1.01527 1.02489 1.20752 0.99628 0.94063 0.96271 0.92009 0.94277 0.96624 0.96883 0.89035 0.93168 0.90737 0.94833 0.91622 0.92295 0.91321 0.92053 0.84423 0.85654 0.85787 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.22 16 2 C -0.11 -2.58 5.03 -26.73 -0.13 -2.71 16 3 C 0.21 4.86 1.61 -68.87 -0.11 4.75 16 4 H 0.00 -0.03 7.83 -51.93 -0.41 -0.44 16 5 C -0.49 -12.51 6.44 -34.44 -0.22 -12.73 16 6 H 0.07 1.87 4.36 -52.49 -0.23 1.65 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.90 -24.96 11.33 55.43 0.63 -24.33 16 9 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 N -0.49 -9.50 3.55 -216.87 -0.77 -10.27 16 14 C 0.03 0.54 4.95 -2.12 -0.01 0.53 16 15 C -0.12 -1.65 7.00 -25.35 -0.18 -1.83 16 16 C -0.12 -1.63 6.53 -25.35 -0.17 -1.79 16 17 C 0.11 1.91 2.42 -67.22 -0.16 1.75 16 18 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 19 C -0.04 -0.65 3.14 -104.62 -0.33 -0.98 16 20 C -0.05 -0.85 7.19 -39.59 -0.28 -1.14 16 21 C -0.16 -2.81 10.03 -39.52 -0.40 -3.20 16 22 C 0.08 1.37 7.30 -39.42 -0.29 1.09 16 23 F -0.15 -2.68 17.27 2.25 0.04 -2.64 16 24 C -0.16 -2.67 10.03 -39.51 -0.40 -3.07 16 25 C -0.09 -1.51 9.68 -39.59 -0.38 -1.90 16 26 H 0.06 1.45 7.05 -51.93 -0.37 1.08 16 27 H 0.04 0.77 7.19 -51.93 -0.37 0.40 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.01 0.27 6.75 -51.93 -0.35 -0.08 16 30 H 0.09 2.38 6.09 -51.93 -0.32 2.06 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.07 1.23 7.21 -51.93 -0.37 0.85 16 33 H 0.03 0.58 7.95 -51.93 -0.41 0.17 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.14 2.42 7.71 -52.48 -0.40 2.02 16 39 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.12 1.87 8.05 -52.49 -0.42 1.44 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -27.30 321.78 -9.20 -36.50 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.13 Total: 1.12 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.80 Total: -21.88 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.14 Total: -34.60 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.30 -9.20 -36.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.959 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds